TCONS_00023997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023997
Unique NameTCONS_00023997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023997 ID=TCONS_00023997|Name=TCONS_00023997|organism=Clytia hemisphaerica|type=transcript|length=273bp
CTTGATCTTGCCTGTCTTAAAAGTTGTTGATGATTGGATTGTTAATGCAG
AATGAAGAGAAATGGATAATGCAATGGCCAATGGCTGACTGCTGTGCTGT
GACTTCTCAACCTTCATTCCTTATTCTCCATCCATGCACCCATCATCCAG
GAATTCCCATCATCCATgcttctatatattaatagccgtagtctgtatgt
gtgtttgtgtgtcactttcgttttcgcaagcaatgttttgttcttttaaa
agatgacttttgcttcttgctcc
Run BLAST on NCBI

transcript from alignment at sc0000468:252596..252868

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023997 ID=TCONS_00023997|Name=TCONS_00023997|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0000468:252596..252868 (Clytia hemisphaerica)
ggagcaagaagcaaaagtcatcttttaaaagaacaaaacattgcttgcga
aaacgaaagtgacacacaaacacacatacagactacggctattaatatat
agaagcATGGATGATGGGAATTCCTGGATGATGGGTGCATGGATGGAGAA
TAAGGAATGAAGGTTGAGAAGTCACAGCACAGCAGTCAGCCATTGGCCAT
TGCATTATCCATTTCTCTTCATTCTGCATTAACAATCCAATCATCAACAA
CTTTTAAGACAGGCAAGATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013480XLOC_013480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023997-exon-sc0000468-1491911889:252596..252868TCONS_00023997-exon-sc0000468-1491911889:252596..252868Clytia hemisphaericaexon
TCONS_00023997-exon-sc0000468-1510915933:252596..252868TCONS_00023997-exon-sc0000468-1510915933:252596..252868Clytia hemisphaericaexon
TCONS_00023997-exon-sc0000468-1575043694:252596..252868TCONS_00023997-exon-sc0000468-1575043694:252596..252868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000468supercontigsc0000468:252596..252868 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.86316	3.94977	13.997	7.40283	5.27188	0.686334	4.71189	2.24357	2.34422	0	2.45779	4.76458	2.71815	5.16301	0.989544	1.84897	1.09743	1.53072	5.96437	6.19259	2.67508	5.12331	2.22889	3.42365	5.96178	6.50805	0	1.51784	0.44919	1.89164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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