TCONS_00023994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023994
Unique NameTCONS_00023994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023994 ID=TCONS_00023994|Name=TCONS_00023994|organism=Clytia hemisphaerica|type=transcript|length=222bp
tgtataaTCTTTATTTAAAGATTAtaggaaatataaaaaaatcaaataat
ggAACATGTTTGGTTAATACTTgacaaaataaatttgtttggattcgtta
aattattttttacaattttgtacTCCAGATTAAGACTTCCACAAGTCGAT
TGAACGAGGTAACTCTTTCACCTCCCGCCATAGTTTGTATGCAAAAAATT
GTAATTGCAAGGACAAATATCA
Run BLAST on NCBI

transcript from alignment at sc0000468:211157..211378

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023994 ID=TCONS_00023994|Name=TCONS_00023994|organism=Clytia hemisphaerica|type=transcript|length=222bp|location=Sequence derived from alignment at sc0000468:211157..211378 (Clytia hemisphaerica)
TGATATTTGTCCTTGCAATTACAATTTTTTGCATACAAACTATGGCGGGA
GGTGAAAGAGTTACCTCGTTCAATCGACTTGTGGAAGTCTTAATCTGGAg
tacaaaattgtaaaaaataatttaacgaatccaaacaaatttattttgtc
AAGTATTAACCAAACATGTTccattatttgatttttttatatttcctaTA
ATCTTTAAATAAAGAttataca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013477XLOC_013477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023994-exon-sc0000468-1491911889:211157..211378TCONS_00023994-exon-sc0000468-1491911889:211157..211378Clytia hemisphaericaexon
TCONS_00023994-exon-sc0000468-1510915933:211157..211378TCONS_00023994-exon-sc0000468-1510915933:211157..211378Clytia hemisphaericaexon
TCONS_00023994-exon-sc0000468-1575043694:211157..211378TCONS_00023994-exon-sc0000468-1575043694:211157..211378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000468supercontigsc0000468:211157..211378 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.1944	4.67712	2.71529	2.65649	0	1.27778	0	0	1.01043	0	1.21482	0.798572	0	0	0	0	0	0	0	0	0	1.69644	1.37483	1.24992	0	0	0	0	0	1.35595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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