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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023993 ID=TCONS_00023993|Name=TCONS_00023993|organism=Clytia hemisphaerica|type=transcript|length=960bp
TTTCCATCTGATGGAAAATGTCTGAACTCAAGAACTGGGGGTGGTTTCCC
TCGAGTCCAACTTTTGGTCAATTTTGAATAATAAAACTTAAATGAAGCTG
ATGTCTTAACTTTATATCTGATATCTAAGAAGCATATCTCATAACATCTA
CCTGAAGATGTTGAGAATAAGAGGGCACCAATTTCAGATTCAGATCTCTA
TCTGAAAGAGCCTCGTTATCTGGTAAGCTTTCAATGTAAGACAAAACTTG
TTCTACATCCCAAATAAAAGCATACTTGGGCTGTGGCGGCATTTCATTAA
ACACTCCTCCTAGAAGAGAACAAATCTTTGAGTGCTTGCCCACATCAAAA
CTGTCTATATTTTTATGATAGGCAGAGATTGCAGATCGAAACAAATTAAT
CGTGCTATACTCATATTTCTGTTGGAATAAATGAgccaaaaaatcaagaa
caaaTCTCAAATCATATTCATGGGGATCAACTTGTTGTTTACTACACCAG
CAAACCCATTTGCCCCAGGCCAATTTGTAACTAGATCTAGTACCCTCTCT
CCTGGATTTAACGATAAGGTTTGCAGCCTTTGTTGATATGCCTTCTGTAA
GAAGCCTTTCCCTGACACCCTCCATGCCACCAACCCCAGGGTGTGATTTT
CCACAAGTGGGTGTAAGTTTCCTTGGGGATGTGTTAACAAGCCTTGACTT
GGCTTCATCAGAATTGGATCCGCTACGCATAGTTCCAAAACCTGGTTGTA
CCACGATTGACCTGGCCAATGTTACTCAGGCGCCGCGGCTCGACATTTTA
AGTGGTCGGGCCACATaatatagtgtctaaggaggcgccaccatggttgg
cgccgacgggctagaaaattttgtgaatttcactcctctagattggctaa
aacagccccTTTTCTTGAAGAAGATAAAGCTCATAAAGCGCTTGAATATC
ATGCGCAAGG Run BLAST on NCBI protein sequence of TCONS_00023993-protein >TCONS_00023993-protein ID=TCONS_00023993-protein|Name=TCONS_00023993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MRSGSNSDEAKSRLVNTSPRKLTPTCGKSHPGVGGMEGVRERLLTEGIST
KAANLIVKSRREGTRSSYKLAWGKWVCWCSKQQVDPHEYDLRFVLDFLAH
LFQQKYEYSTINLFRSAISAYHKNIDSFDVGKHSKICSLLGGVFNEMPPQ
PKYAFIWDVEQVLSYIESLPDNEALSDRDLNLKLVPSYSQHLQVDVMRYA
S Run BLAST on NCBI transcript from alignment at sc0000468:183362..184321 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023993 ID=TCONS_00023993|Name=TCONS_00023993|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0000468:183362..184321 (Clytia hemisphaerica)
CCTTGCGCATGATATTCAAGCGCTTTATGAGCTTTATCTTCTTCAAGAAA
Aggggctgttttagccaatctagaggagtgaaattcacaaaattttctag
cccgtcggcgccaaccatggtggcgcctccttagacactatattATGTGG
CCCGACCACTTAAAATGTCGAGCCGCGGCGCCTGAGTAACATTGGCCAGG
TCAATCGTGGTACAACCAGGTTTTGGAACTATGCGTAGCGGATCCAATTC
TGATGAAGCCAAGTCAAGGCTTGTTAACACATCCCCAAGGAAACTTACAC
CCACTTGTGGAAAATCACACCCTGGGGTTGGTGGCATGGAGGGTGTCAGG
GAAAGGCTTCTTACAGAAGGCATATCAACAAAGGCTGCAAACCTTATCGT
TAAATCCAGGAGAGAGGGTACTAGATCTAGTTACAAATTGGCCTGGGGCA
AATGGGTTTGCTGGTGTAGTAAACAACAAGTTGATCCCCATGAATATGAT
TTGAGAtttgttcttgattttttggcTCATTTATTCCAACAGAAATATGA
GTATAGCACGATTAATTTGTTTCGATCTGCAATCTCTGCCTATCATAAAA
ATATAGACAGTTTTGATGTGGGCAAGCACTCAAAGATTTGTTCTCTTCTA
GGAGGAGTGTTTAATGAAATGCCGCCACAGCCCAAGTATGCTTTTATTTG
GGATGTAGAACAAGTTTTGTCTTACATTGAAAGCTTACCAGATAACGAGG
CTCTTTCAGATAGAGATCTGAATCTGAAATTGGTGCCCTCTTATTCTCAA
CATCTTCAGGTAGATGTTATGAGATATGCTTCTTAGATATCAGATATAAA
GTTAAGACATCAGCTTCATTTAAGTTTTATTATTCAAAATTGACCAAAAG
TTGGACTCGAGGGAAACCACCCCCAGTTCTTGAGTTCAGACATTTTCCAT
CAGATGGAAA Coding sequence (CDS) from alignment at sc0000468:183362..184321 >TCONS_00023993 ID=TCONS_00023993|Name=TCONS_00023993|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000468:183362..184321 (Clytia hemisphaerica)
ATGCGTAGCGGATCCAATTCTGATGAAGCCAAGTCAAGGCTTGTTAACAC
ATCCCCAAGGAAACTTACACCCACTTGTGGAAAATCACACCCTGGGGTTG
GTGGCATGGAGGGTGTCAGGGAAAGGCTTCTTACAGAAGGCATATCAACA
AAGGCTGCAAACCTTATCGTTAAATCCAGGAGAGAGGGTACTAGATCTAG
TTACAAATTGGCCTGGGGCAAATGGGTTTGCTGGTGTAGTAAACAACAAG
TTGATCCCCATGAATATGATTTGAGAtttgttcttgattttttggcTCAT
TTATTCCAACAGAAATATGAGTATAGCACGATTAATTTGTTTCGATCTGC
AATCTCTGCCTATCATAAAAATATAGACAGTTTTGATGTGGGCAAGCACT
CAAAGATTTGTTCTCTTCTAGGAGGAGTGTTTAATGAAATGCCGCCACAG
CCCAAGTATGCTTTTATTTGGGATGTAGAACAAGTTTTGTCTTACATTGA
AAGCTTACCAGATAACGAGGCTCTTTCAGATAGAGATCTGAATCTGAAAT
TGGTGCCCTCTTATTCTCAACATCTTCAGGTAGATGTTATGAGATATGCT
TCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023993-exon-sc0000468-1491911889:183362..184321 | TCONS_00023993-exon-sc0000468-1491911889:183362..184321 | Clytia hemisphaerica | exon |
| TCONS_00023993-exon-sc0000468-1510915933:183362..184321 | TCONS_00023993-exon-sc0000468-1510915933:183362..184321 | Clytia hemisphaerica | exon |
| TCONS_00023993-exon-sc0000468-1575043694:183362..184321 | TCONS_00023993-exon-sc0000468-1575043694:183362..184321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000468 | supercontig | sc0000468:183362..184321 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023109 | Integrase_recombinase_N |
| IPR010998 | Integrase_Lambda-type_N |
Blast
The following BLAST results are available for this feature:
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