TCONS_00023979 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023979
Unique Name	TCONS_00023979
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1967

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000468:187872..196402-
coding sequence from alignment at sc0000468:187872..196402-

transcript sequence

>TCONS_00023979 ID=TCONS_00023979|Name=TCONS_00023979|organism=Clytia hemisphaerica|type=transcript|length=1967bp
TAAAAGGTGGTCTGGAAGATTCAAAGTCTCCAccaagtttttttgttttc
tacCGGAGTTTACAGTTTTACGATCGTTTGTACTTTACTGCTTGATTTTG
AAGACTATAGTGCTATTGTGAAGTTACTAAGAACATTTTCTTGTTAATCC
AATCGAGATTTATCTGCAATGGCACCACGTCAGGAAGAAACTAGCCTGAC
CACTTCACCACAAACAGCTACTTCAACTCCACCTGTTGCTACGCCAACTC
AATCAGCACCACGACCCACCATTTCAAATAATGTTAGTGCTCGTATAAAA
GCAGCTTTGTCTCTCGCagATTTGAAAAAGCATAAACGACATTCAAGTAT
GAGCTATCCAGACGGTACACGAACTTTGGGTCGCATGGGTCCCCCACCCC
ACCAGGGCCAAGGACGTTTTGGTGGAGGTGGCCATGGAGGACCAGGATTA
GCCCCAGGACTTGGACAAAGAGGATTCAGTGATCCAGGCATGCCACCCTT
TGCAATGGGACCTGGAGGACCAGGTGGACCTGGAGGACAAGGTGGACCTG
GTGGCCCTGGAGGACCAATGGGAGGGCCAATGATGGGTGGACCAGGAGGG
CCAATGATGGGTGGACCAGGAGGTCCAAGACCCTTCATGTCATCAACATT
ACCTCGGAATGGCATCGGAGGCCAACGTAGAGCCGGGCCTGCAGACCCTT
TCATGGAAATGGAAAGAATGAAAAGGGCCATGGTTGGTCTACAAGAACAA
CTCACCCTCGCTGATAACACAATCATAAAACTTCGAAGTGGTCAAGACAT
TCAAAATGGTGTCGCAATGGgcggaaaatttgaaaatatttctcaagGCG
GAACACGTCCTTCACAAATTATTGAGCAATATGGACAATTATATTCTCAA
GGGCGTTTAAATGCTATGGATGATTTAGACCAGATTGCGGGACTCTCGAA
ATACGGAAAACACAcagaaatgaaacaaaaaattctctacGGAATTATGG
TTGCATCTTACAAAGTGTCGTATGAGTATTTGACCAAATTGAAGAACAAC
ATCAAACGATTGATGGATATACCTGAGAAACATTCACCGAACGAGAAGGA
CGTCCATGGAGAAGCTCTCACCTTCTTGACATCTTACTTTCAATCCACGA
CACAAAACTTTGCTCTTGATCCAATCGTCCAGGACGTGCAAGACCAATTG
ATTcagttgttgcctgaatttcCAAGTTTGTCAAGACTCCCTGGAATTTC
TCAATATTCTGCAGATTGTTGTCGTGTGGCTTGGCATATGGTTAATCAAA
TCCAACCCTTAGAATTGGAGCATAGCCAAGAGAAATTCAATGATGCTACC
CACACTCGTTTTCATGCCTCTTCAGAGAAAACCAATAAGATCAAAATGTA
CGTTTGGCCTACACTCATTGATACTGGTTCAAAAGCAGTGCTTTTCAAAG
GTGTTGTCTGGACCTAAAGATTGCATCATCGTATAAATCAGCCCTTatcg
aaaatgaaaattctcattgttttttaaaaatgatatCGTGTAGCTTGGGC
GAGGCTGAGTTGAACTGTGTTGGTTGGTGTTCGTGACGTTAAAGCtaaga
agaaaaaaggaaaatcaaacaatcCAAACGCGAAATAAAAAGCTTTGGAA
GTGTTTCAGCTCGTTGCATATTTTTAAGTGAACTGAGCCAAAAGATAATT
CAATGAAAAGTTATAACAAATTTTTAGTTTACAAACAGCAAAGATAATTT
TTCCAATTCATTAATTTTGCTATTATTTTTGAGAACtctatttatttata
ttttggttatttttattaacaaattatttttggacAACAATTacatattt
ttcaataaaatatttttctgtacATAGAAGAACGTTATGTTTGTccgaaa
tttctttttgtaattttttatcttttgtttatttttgataaacattttgT
ATGAAAAAGTTGTCTCG

Run BLAST on NCBI

protein sequence of TCONS_00023979-protein

>TCONS_00023979-protein ID=TCONS_00023979-protein|Name=TCONS_00023979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MAPRQEETSLTTSPQTATSTPPVATPTQSAPRPTISNNVSARIKAALSLA
DLKKHKRHSSMSYPDGTRTLGRMGPPPHQGQGRFGGGGHGGPGLAPGLGQ
RGFSDPGMPPFAMGPGGPGGPGGQGGPGGPGGPMGGPMMGGPGGPMMGGP
GGPRPFMSSTLPRNGIGGQRRAGPADPFMEMERMKRAMVGLQEQLTLADN
TIIKLRSGQDIQNGVAMGGKFENISQGGTRPSQIIEQYGQLYSQGRLNAM
DDLDQIAGLSKYGKHTEMKQKILYGIMVASYKVSYEYLTKLKNNIKRLMD
IPEKHSPNEKDVHGEALTFLTSYFQSTTQNFALDPIVQDVQDQLIQLLPE
FPSLSRLPGISQYSADCCRVAWHMVNQIQPLELEHSQEKFNDATHTRFHA
SSEKTNKIKMYVWPTLIDTGSKAVLFKGVVWT

Run BLAST on NCBI

transcript from alignment at sc0000468:187872..196402-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023979 ID=TCONS_00023979|Name=TCONS_00023979|organism=Clytia hemisphaerica|type=transcript|length=8531bp|location=Sequence derived from alignment at sc0000468:187872..196402- (Clytia hemisphaerica)
TAAAAGGTGGTCTGGAAGATTCAAAGTCTCCACCAAGTTTTTTTGTTTTC
TACCGGAGTTTACAGTTTTACGATCGTTTGTACTTTACTGCTTGATTTTG
AAGACTATAGTGCTATTGTGAAGTTACTAAGAACATTTTCTTGTTAATCC
AATCGAGATTTATCTGCAATGGCACCACGTCAGGAAGAAACTAGCCTGAC
CACTTCACCACAAACAGCTACTTCAACTCCACCTGTTGCTACGCCAACTC
AATCAGCACCACGACCCACCATTTCAAATAATGTTAGTGCTCGTATAAAA
GCAGCTTTGTCTCTCGCGTAAGTCTTCTGCATTATTTCTCAGGGTGTTTT
TTATGGTACAAACTTTTACTTTTTTATCAGCCAGAGTTAGAATGTCTTTG
TTGAAAATGTCCAATGTCATCCATCTTCAATCAGGATCTAGTAGCTTCTC
TTTTGGTAATCCGAAAAGTGTCCCTCATTTGTAGAAACTGACTGGCTCCT
TCAAGTCCTTGACCATGTTTTGAACCATATTGAGATCTCGTCTATCTTTC
CAATCACCTCCAGCACTGGACTATGACACCAAGTGAAAGAAAGTTCTTTA
TATAAAACTCAAAGAATTATTTTATTTTGAAAATATAAGGTACGATTTCC
TTCGGAAAATAGAGATTTTCCTTGGAAAATACAAAGAATGATTTTCCTTG
AGAATGATTTTCCTTGGAAAATACAAAGAATGATTTTCCTTGAAAAATAC
AAAGAATGACTTTTCTTGGAAATTACCAAAAATGGTATTCTTTGGAAAAA
ACAGAGAATGGATTTCCTTTGAAAATACAAAGAAGGCCTCCCTTGGAAAA
CATAAAAAAATATTTTCATTTGAAAATACAAAAACGACTTTCCTCACAAA
ATACATACAGGACTTTCCTTGGAAAATACACAGAATGATCTTCTTTAATG
AATGGAGATAGGAAAGAGGACAGCCTTTGAAAATGCAAAGAATGGTTTTC
CTTGGAAAATACAAAGAATGGTTGTCCTTGGAAAATACAAAGAATGATTT
TCCTTGTAAAATACAAAGAACGACAAACGACTTTCCCTGCAAAATACAAT
GAAGGGAAATACACAAATTGATCTTCTTCAATGGAAAATACTCAGGATGG
TCTTATTTCAACAATAAAATCATTGCTTTTTTAGAAAGTACAAGGGATGG
ATTTTCTTGGAAAAGATATGATACTTTCATTATTATTTCTATTTTTAAAA
AACCTGTTCATCAGTTATCCAGATATTTCTTAAAATGTCATGGAAAATGA
AAACCCACTCTAAGCCAATCTTGTTACCATAGCATTATTGTGGTGTTACT
TTATGTGTTTCTAAACAAATTCATTTCTCAAATTTACATAATGCTTTGAA
AGTCTCTTCCTTCTTTTGTCCTTGTCTATTTATCTTAGAACATGTGATCA
TGGGTAACAAAATATTACAATAACATAATATTTTTTATAAGAAAACGTGT
AGTAAAGCTTGGCTTCGATGATTTCTTTATACTTAGATCTTCTTTCATAT
GATTACGTCATTAAAGAACCTTAAATAAGAGAGCGATTATTCAGAATCAG
ATTACGAGAACTTATTCTTACTGTTACTGTCCAAATATCTTTAGAACACT
TTAAGAACATTTTAAGAATAATAGGTGGTATGCGTTACAAATGAGCTCAC
ATCTCACGATGGTAATATTAAATTTTCATTACATAAGTTTTAATGAGCTC
TTTAATGAAATTCTATTGTGACGTCGAAAACAAAGGACAATAGACACACT
AGCCTTCACTTTTGGATTGAAATTCTTTGAGGCGAGGCGAATATTGTTTT
TGAATAGCGAAACGTCAGTCTTTATCTGTATTATCATGTTAAATAATATT
TTTTCTCTTACCTGTGGAAGATTTTTCATTTTCGTTCATTTGATGATTGT
CATAATCAGTAAGAGAAGATTGAATAATTTGAGAGATATGTCATCGTCTG
AATTTCGTACTGTTTGTTTGTTTATGAAGAAGTTACATTTTAAACTACTC
TAAGTAGCTTGTTCTGTTTTGAATCATTAAAGTTTTGAATTAGTTCTTTT
AAATTAGTTCTTGCATTGTTTGGAATTTAAAATGTTTCAACATCTCAATT
TAGATGACCTCATGGTTCAACTAATTGTTCTTCTAGTCTAGAACGTTTTA
TTTGAATGTTATTTGCTATTCGATATACTGCGAAAGTAGCACTCCCACAA
TCAGATACAGAAACTTTTTATTTCAAATTTAGTTTTGCTTGCTTTGTTTC
CAAATTTGAGATTCTCAAAGAAATTAAAGGATTGTCTGTAGATTCAAGTT
ATCTTTTTTTGGATGCGTTAAAAGTAAGTTCAGTTGAATTAAGTACGATT
GGTGGATAAAGATAGTTTTCTAGATAAAGGCTGTTTTTCCCAATGAAATA
TAAACAATCAAATCATCTCTTGAAGAAATTTTTTCTTTTTTGAGGAAAAT
AACAACAGAATGTAATTAGCAAAAGGAAGCAGTAGTCATGGCAACAATGG
TATTAAAACGTTTTGTAATTTCCTCATAGCGCTAGAAGAGAAAAAATAGA
ATGCTTCATTTCTTTTTAACATTAAATTTTTCAAATCCGAACAAAGTTAT
CAAAGTTCCTTATTCTCAAAAGCCTAACTCCTTGGTCATCTATGTCCCAT
TTACAGAGTTTTTAATCGTATAACCTTCACAATTGCTACCCCAATGTATC
TTCGAAAAGTGGATTGATTGCCTTCTTTATAATTGACCTGTGCTATAAGG
ATAATTAGAGCAGTATTCTCTTTAACAGCTTATGCAATAGACAACTTTAG
CTTTAATTAAAAGCAGAAACCACATAACATTGGTTTTTTGAATATTTTCA
TGATAACATTCTCCTGTCTGTCTTTCTCTGTGCTGTGTGTTTATATGTTA
AAAGAAAGATTTAATACCTATTACTGAAAGCTAGAGTTATTTCATTTGTG
TTTTTTGGGGGAAATATTTAGCAATATTTTGAGCCTTCAAATTGACAACT
TAACTATGTTTGTAAGATGATACTGTATGCTTTGTTTCATTTCAAGGCCG
ACCAGAAAAAAACAGAAATAAGAACTTGGGAAAATCTTTTGCGTGAATTG
AAGAGGTGGAACTACAAAAATAATCTCCTTAAATTCACAATATTCATAGA
CTCCTGTCTCAATGACCCAGTGAAAATTAGGTATAACATAATGAATGGAA
AATTGTCTGTTTTCTTTTTCAAAAAAGGAGGGAGGGGACCTTTCCACTAT
AAGCTTTTTTACTCATTGAAACTCATTTATACTGGAAAGATTTGAAGATT
TTCTCTTTTTGGGTGTGGGAAAGTTATTCTTATCTCCGATTATCTCACTT
TGTGATTCATCGACAAAGAAACATCACTCATTAAGCCTTTTTAATGAGTA
TAATATTGTAAAAATAATTTTCAATCTGCTGACATCTTCATTTTTAAAGG
AAACTGTTTCTATGTTAATTGTAATTGAGAATCAAAATTAGTTTCTAAGC
TAAGCTTGAATCTGAAGCAAGAAATTGAATAGTTTGTCATTGTTAATGTT
GTCTTCAACCTTTAAAAGACCTTTCTCTATGTATATTTTCAATGACAATG
ACATGAGTAATTCCATCAGAAGATGAATTTTAATAGCACCTGTCAAAAGC
TCACATCCTGAATGGTCTGAGATTTTGTCTAGAATCTAACACATATATAA
ACTCAACTAATGTCTTCCTTCTTTTCTTATTTTTCAGAGATTTGAAAAAG
CATAAACGACATTCAAGTATGAGCTATCCAGACGGTACACGAACTTTGGG
TCGCATGGGTCCCCCACCCCACCAGGGCCAAGGACGTTTTGGTGGAGGTG
GCCATGGAGGACCAGGATTAGCCCCAGGACTTGGACAAAGAGGATTCAGT
GATCCAGGCATGCCACCCTTTGCAATGGGACCTGGAGGACCAGGTGGACC
TGGAGGACAAGGTGGACCTGGTGGCCCTGGAGGACCAATGGGAGGGCCAA
TGATGGGTGGACCAGGAGGGCCAATGATGGGTGGACCAGGAGGTCCAAGA
CCCTTCATGTCATCAACATGTAAGTTTGCCATGTGTTTATCAATTTTACC
TTGTTCTCGTCATACCAGTCAGTTAGTCAGATACATTTAAACCACACTAA
ATGCTCAGTAGTAGAGAATTTAAGGTTGGTAGAGTTTAATGATAGCCATC
CAAGCTCACATTTATCGATTTGATTAATAGAATAATGGTTTAATACTATG
CAATAAATGATTTACTTTATAACTACTTAAATTCTGTTTCTATCTTTTTA
TCAATAGCTTTGCAACTGTCTTCCAGCTGAGTCAACTAGCTTTCGTGCAG
TTTGACTGAGTGTTTGTTTTTTTAATAGAACGACCTCTTGTGTTTCATTG
ACAAGGCTTCTCAAGTTACTGCACCTCTTTAAAAGGCCTGTTAAGTAGTA
AGAAATCTAGTTTTCAGAAGCCAGTAGGTTACAAATCAGCAATTTTGAAT
AGCNACTCTTTAAAGGGCCGGTTAAGTTGTAAGAAATCTAGTTTTCAGAA
GCCAGTAGTATATATAAATCAGCAATTTTGAATAGCTCCTGAATAACAGG
CATTGTTGGAAGAGCCTTGTTATGGGAGGGCTGTTAGAGTATATAGAGCC
ATACCGTCCTGTTTCTTTACGAAAGAAAATCCTGAAACGAAGATACATTC
TAAGCAATGGCATACTGCTAGAATGATGCTTATAAACAAAATATACATTG
TAGCTAACAAGGTTTTTGTTTTGAATTTGTCAGCCTTTTATCGTCACCTC
TTTTAGCAACAAATTGATAAAATAATTGAATACATGATATAGCTCATTGA
AAGCCAAAATAAACATACTTTGATGTCGAGTAGCTTTGATACTTTGATAT
CATGATAGCTGATGTTAATCAGTACTTCTGTAATAGAGTTTTAATATTAT
AGCATTTCATACGGTTATAAGCTTTTAAAGTCTATAAATCTATTAGAGAC
ATAACTGTGTGTATTTATTACAGTATTTAAGATGTATTTAAGAAGTGGTA
TCTGAGCTGTTTTTAATGGTATGATTCTGACTTCAAAATGTTTTTTATGA
AACTTTGATGAAAACTTCTTATGTGAACTTTTCGTATTTGGATATTGTTG
ATTCGCACAAACTATACATTTAATAAGCTTCCAACTTGTAAAAATTGGAG
GAGGATATTTCACAACTCAACTCAAAAGCATACAAAACTTGTTAAAATTA
CTTTAATTTATACTTACGATAATATAGCATTCTACAAAACGCTGGTATTT
GCTGTTTTTTCATCTGGTAAAGTTTTCTTGAATTATCCAACTGGAACATC
GTGCATTCGTCGAACGTTGGCTTGTTTACTTTGTTGTCTTTATTGAAAAC
AACGTTGGGCTCATTTAAACAGTGGGCGTGGAGTTCGTATTTACATATTT
TCTATACCAAAGGATTTCTAAAAAAGAATCTTTTAGCATTGAAAGATGTT
GATTCTTAGGAAAGATTGACAGAAAAGGTCAATAGAAGGTATTTATGATA
TACACCGGAAAAGCTCTATGTAGAGAGCATTGGGTTTGTTAAGACTTTAC
AATGTCATCGAATCAGAGGAAAAGACTTGCATCTGTTCGTACCATACGAC
AAATGGATGAAGAGAGACAAGTCAACCATCAGCAACAAGTTCGAATGGAA
GCCAGGAGATACACAGCTGTCAGTGCTGATGATTTAGGTAGTTCTCTTGG
TCCGATATTCAAGAAGACTCAGCTTTTTAGTGCTTTTAGATTCGATCGAG
ATTAACTTAGTCTTGAAATGTGATGTTATAAGATAGCTAGAATTTGAATT
AGAATTTGTTTAAGAAATATAAATCCAGTTAAAGGAATCTATATATGCAC
TTCTTAGAAGCTTATAGAAGCTTAGATACATTTTATCACTATAAGACCCA
AATTTATCTCATTTGAATAATAAAAATTACTTTTGCCACTGTATTTTTTT
CTGATAAATACTCCAAAAACGTTGTGAAACTAAGTTCAAGGGTAGCTCTT
TACTTTATCATGATTGTCTTTGCAAATCAATCTTTAAAGGTTTGAGGAAT
TTCAAATTATTCTCAACTTTGTTGTTTTACAGTACCTCGGAATGGCATCG
GAGGCCAACGTAGAGCCGGGCCTGCAGACCCTTTCATGGAAATGGAAAGA
ATGAAAAGGGCCATGGTTGGTCTACAAGAACAACTCACCCTCGCTGATAA
CACAATCATAAAACTTCGAAGTGGTCAAGACATTCAAAATGGTGTCGCAA
TGGGCGGAAAATTTGAAAATATTTCTCAAGGCGGAACACGTCCTTCACAA
ATTATTGAGCAATATGGACAATTATATTCTCAAGGGCGTTTAAATGCTAT
GGATGATTTAGACCAGATTGCGGGACTCTCGAAATACGGAAAACACACAG
AAATGAAACAAAAAATTCTCTACGGAATTATGGTTGTAAGTAGATATTAC
TCTCGATTCAACCCTTCAAAGTATGGTTTGATTTTTAATGTGAAAAAAAA
TTACTGGGTGTAGATGATCGTCAGATGAGACGTAAGGAAAAGGAACATCA
AATAGTGGGTTTCCAAAAGTAAACAAATAAACAAAGTGCTTAATTAGAAA
CCAATTTTCATAATAATTGTCGCTAATTAAGCCCTTACTTCCGTTGTCAG
GTGGCTTGAAAACCAGTTCCTCACATTTATTAATTTTTCCAGCACGTAAC
ATTTTCTCAAACAAAACTTTCATATATTCTCAGTCGAGCGTTAGTTGGTT
GGCCTTTTTTGGGGAGATACCGAATGGGTCTAACTGAATAAAACCTAGCT
CCCTATGAAAAATTGATGAAATAGACCTCAACTTACTTCTGACATTACAT
CACGGACCCAACAGCTGATTGGTTGTAAGTGACGTAAAATCACTCAATAC
GTCACTTTCAACCAATCAGCTATTGGGTGGAATGGAAGACATTGCAATGG
TGCATATCATGAATTCCGATAGATCCGATAGAATCAATAATTCCAATCAA
TCGATGATTTTCCATTCTTCTATTCAGGCATCTTACAAAGTGTCGTATGA
GTATTTGACCAAATTGAAGAACAACATCAAACGATTGATGGATATACCTG
AGAAACATTCACCGAACGAGAAGGACGTCCATGGAGAAGCTCTCACCTTC
TTGACATCTTACTTTCAATCCACGACACAAAACTTTGCTCTTGATCCAAT
CGTCCAGGTAAACTCCTTTGATATTTGGCAATTCTTTGATTTCATCTCTT
TCTGAGGTTCTAGAAAGATAGGTGGAGACTGTTAGTGTATTTATTTGAGA
AGCATTGTGAAATTTTCAAAGATTGGTTTGACACTGTGATAAGTTAACTT
TTTTTGCCATAACCAAACACCCTTGTGAAGTTCTTTTTCCTTTTTTCACC
GTTCTAAATAAATTTTCAGTTGTTCTGCGACAAGCTTGTGCATTTGTAAA
GATAAGGGCTCGCTCGTCGTAGAACTATCAATTTGTTTGGGGTTCGTGTT
TTTTAGGTTTACCTTTATTGTATAGCCTTGTATGATTGACGGAAGCTAAT
TGAAGCAATTCAAAAATAGGATACATAGCCCCGGTAACTATTGGTGAAAG
TTAGTCGCCTTTCTCAATCCTAATGTTCTCTTTCCTTATTATTCAGGACG
TGCAAGACCAATTGATTCAGTTGTTGCCTGAATTTCCAAGTTTGTCAAGA
CTCCCTGGAATTTCTCAATATTCTGCAGATTGTTGTCGTGTGGCTTGGCA
TATGGTTAATCAAATCCAACCCTTAGAATTGGAGCATAGCCAAGAGAAAT
TCAATGATGCTACCCACACTCGTTTTCATGCCTCTTCAGAGAAAACCAAT
AAGATCAAAATGTACGTTTGGCCTACACTCATTGATACTGGTTCAAAAGC
AGTGCTTTTCAAAGGTGTTGTCTGGACCTAAAGATTGCATCATCGTATAA
ATCAGCCCTTATCGAAAATGAAAATTCTCATTGTTTTTTAAAAATGATAT
CGTGTAGCTTGGGCGAGGCTGAGTTGAACTGTGTTGGTTGGTGTTCGTGA
CGTTAAAGCTAAGAAGAAAAAAGGAAAATCAAACAATCCAAACGCGAAAT
AAAAAGCTTTGGAAGTGTTTCAGCTCGTTGCATATTTTTAAGTGAACTGA
GCCAAAAGATAATTCAATGAAAAGTTATAACAAATTTTTAGTTTACAAAC
AGCAAAGATAATTTTTCCAATTCATTAATTTTGCTATTATTTTTGAGAAC
TCTATTTATTTATATTTTGGTTATTTTTATTAACAAATTATTTTTGGACA
ACAATTACATATTTTTCAATAAAATATTTTTCTGTACATAGAAGAACGTT
ATGTTTGTCCGAAATTTCTTTTTGTAATTTTTTATCTTTTGTTTATTTTT
GATAAACATTTTGTATGAAAAAGTTGTCTCG

Coding sequence (CDS) from alignment at sc0000468:187872..196402-

>TCONS_00023979 ID=TCONS_00023979|Name=TCONS_00023979|organism=Clytia hemisphaerica|type=CDS|length=6495bp|location=Sequence derived from alignment at sc0000468:187872..196402- (Clytia hemisphaerica)
GACGTGCAAGACCAATTGATTCAGTTGTTGCCTGAATTTCCAAGTTTGTC
AAGACTCCCTGGAATTTCTCAATATTCTGCAGATTGTTGTCGTGTGGCTT
GGCATATGGTTAATCAAATCCAACCCTTAGAATTGGAGCATAGCCAAGAG
AAATTCAATGATGCTACCCACACTCGTTTTCATGCCTCTTCAGAGAAAAC
CAATAAGATCAAAATGTACGTTTGGCCTACACTCATTGATACTGGTTCAA
AAGCAGTGCTTTTCAAAGGTGTTGTCTGGACCTAAGCATCTTACAAAGTG
TCGTATGAGTATTTGACCAAATTGAAGAACAACATCAAACGATTGATGGA
TATACCTGAGAAACATTCACCGAACGAGAAGGACGTCCATGGAGAAGCTC
TCACCTTCTTGACATCTTACTTTCAATCCACGACACAAAACTTTGCTCTT
GATCCAATCGTCCAGTACCTCGGAATGGCATCGGAGGCCAACGTAGAGCC
GGGCCTGCAGACCCTTTCATGGAAATGGAAAGAATGAAAAGGGCCATGGT
TGGTCTACAAGAACAACTCACCCTCGCTGATAACACAATCATAAAACTTC
GAAGTGGTCAAGACATTCAAAATGGTGTCGCAATGGGCGGAAAATTTGAA
AATATTTCTCAAGGCGGAACACGTCCTTCACAAATTATTGAGCAATATGG
ACAATTATATTCTCAAGGGCGTTTAAATGCTATGGATGATTTAGACCAGA
TTGCGGGACTCTCGAAATACGGAAAACACACAGAAATGAAACAAAAAATT
CTCTACGGAATTATGGTTAGATTTGAAAAAGCATAAACGACATTCAAGTA
TGAGCTATCCAGACGGTACACGAACTTTGGGTCGCATGGGTCCCCCACCC
CACCAGGGCCAAGGACGTTTTGGTGGAGGTGGCCATGGAGGACCAGGATT
AGCCCCAGGACTTGGACAAAGAGGATTCAGTGATCCAGGCATGCCACCCT
TTGCAATGGGACCTGGAGGACCAGGTGGACCTGGAGGACAAGGTGGACCT
GGTGGCCCTGGAGGACCAATGGGAGGGCCAATGATGGGTGGACCAGGAGG
GCCAATGATGGGTGGACCAGGAGGTCCAAGACCCTTCATGTCATCAACAT
ATGGCACCACGTCAGGAAGAAACTAGCCTGACCACTTCACCACAAACAGC
TACTTCAACTCCACCTGTTGCTACGCCAACTCAATCAGCACCACGACCCA
CCATTTCAAATAATGTTAGTGCTCGTATAAAAGCAGCTTTGTCTCTCGCG
ACGTGCAAGACCAATTGATTCAGTTGTTGCCTGAATTTCCAAGTTTGTCA
AGACTCCCTGGAATTTCTCAATATTCTGCAGATTGTTGTCGTGTGGCTTG
GCATATGGTTAATCAAATCCAACCCTTAGAATTGGAGCATAGCCAAGAGA
AATTCAATGATGCTACCCACACTCGTTTTCATGCCTCTTCAGAGAAAACC
AATAAGATCAAAATGTACGTTTGGCCTACACTCATTGATACTGGTTCAAA
AGCAGTGCTTTTCAAAGGTGTTGTCTGGACCTAAGCATCTTACAAAGTGT
CGTATGAGTATTTGACCAAATTGAAGAACAACATCAAACGATTGATGGAT
ATACCTGAGAAACATTCACCGAACGAGAAGGACGTCCATGGAGAAGCTCT
CACCTTCTTGACATCTTACTTTCAATCCACGACACAAAACTTTGCTCTTG
ATCCAATCGTCCAGTACCTCGGAATGGCATCGGAGGCCAACGTAGAGCCG
GGCCTGCAGACCCTTTCATGGAAATGGAAAGAATGAAAAGGGCCATGGTT
GGTCTACAAGAACAACTCACCCTCGCTGATAACACAATCATAAAACTTCG
AAGTGGTCAAGACATTCAAAATGGTGTCGCAATGGGCGGAAAATTTGAAA
ATATTTCTCAAGGCGGAACACGTCCTTCACAAATTATTGAGCAATATGGA
CAATTATATTCTCAAGGGCGTTTAAATGCTATGGATGATTTAGACCAGAT
TGCGGGACTCTCGAAATACGGAAAACACACAGAAATGAAACAAAAAATTC
TCTACGGAATTATGGTTAGATTTGAAAAAGCATAAACGACATTCAAGTAT
GAGCTATCCAGACGGTACACGAACTTTGGGTCGCATGGGTCCCCCACCCC
ACCAGGGCCAAGGACGTTTTGGTGGAGGTGGCCATGGAGGACCAGGATTA
GCCCCAGGACTTGGACAAAGAGGATTCAGTGATCCAGGCATGCCACCCTT
TGCAATGGGACCTGGAGGACCAGGTGGACCTGGAGGACAAGGTGGACCTG
GTGGCCCTGGAGGACCAATGGGAGGGCCAATGATGGGTGGACCAGGAGGG
CCAATGATGGGTGGACCAGGAGGTCCAAGACCCTTCATGTCATCAACATA
TGGCACCACGTCAGGAAGAAACTAGCCTGACCACTTCACCACAAACAGCT
ACTTCAACTCCACCTGTTGCTACGCCAACTCAATCAGCACCACGACCCAC
CATTTCAAATAATGTTAGTGCTCGTATAAAAGCAGCTTTGTCTCTCGCGA
CGTGCAAGACCAATTGATTCAGTTGTTGCCTGAATTTCCAAGTTTGTCAA
GACTCCCTGGAATTTCTCAATATTCTGCAGATTGTTGTCGTGTGGCTTGG
CATATGGTTAATCAAATCCAACCCTTAGAATTGGAGCATAGCCAAGAGAA
ATTCAATGATGCTACCCACACTCGTTTTCATGCCTCTTCAGAGAAAACCA
ATAAGATCAAAATGTACGTTTGGCCTACACTCATTGATACTGGTTCAAAA
GCAGTGCTTTTCAAAGGTGTTGTCTGGACCTAAGCATCTTACAAAGTGTC
GTATGAGTATTTGACCAAATTGAAGAACAACATCAAACGATTGATGGATA
TACCTGAGAAACATTCACCGAACGAGAAGGACGTCCATGGAGAAGCTCTC
ACCTTCTTGACATCTTACTTTCAATCCACGACACAAAACTTTGCTCTTGA
TCCAATCGTCCAGTACCTCGGAATGGCATCGGAGGCCAACGTAGAGCCGG
GCCTGCAGACCCTTTCATGGAAATGGAAAGAATGAAAAGGGCCATGGTTG
GTCTACAAGAACAACTCACCCTCGCTGATAACACAATCATAAAACTTCGA
AGTGGTCAAGACATTCAAAATGGTGTCGCAATGGGCGGAAAATTTGAAAA
TATTTCTCAAGGCGGAACACGTCCTTCACAAATTATTGAGCAATATGGAC
AATTATATTCTCAAGGGCGTTTAAATGCTATGGATGATTTAGACCAGATT
GCGGGACTCTCGAAATACGGAAAACACACAGAAATGAAACAAAAAATTCT
CTACGGAATTATGGTTAGATTTGAAAAAGCATAAACGACATTCAAGTATG
AGCTATCCAGACGGTACACGAACTTTGGGTCGCATGGGTCCCCCACCCCA
CCAGGGCCAAGGACGTTTTGGTGGAGGTGGCCATGGAGGACCAGGATTAG
CCCCAGGACTTGGACAAAGAGGATTCAGTGATCCAGGCATGCCACCCTTT
GCAATGGGACCTGGAGGACCAGGTGGACCTGGAGGACAAGGTGGACCTGG
TGGCCCTGGAGGACCAATGGGAGGGCCAATGATGGGTGGACCAGGAGGGC
CAATGATGGGTGGACCAGGAGGTCCAAGACCCTTCATGTCATCAACATAT
GGCACCACGTCAGGAAGAAACTAGCCTGACCACTTCACCACAAACAGCTA
CTTCAACTCCACCTGTTGCTACGCCAACTCAATCAGCACCACGACCCACC
ATTTCAAATAATGTTAGTGCTCGTATAAAAGCAGCTTTGTCTCTCGCGAC
GTGCAAGACCAATTGATTCAGTTGTTGCCTGAATTTCCAAGTTTGTCAAG
ACTCCCTGGAATTTCTCAATATTCTGCAGATTGTTGTCGTGTGGCTTGGC
ATATGGTTAATCAAATCCAACCCTTAGAATTGGAGCATAGCCAAGAGAAA
TTCAATGATGCTACCCACACTCGTTTTCATGCCTCTTCAGAGAAAACCAA
TAAGATCAAAATGTACGTTTGGCCTACACTCATTGATACTGGTTCAAAAG
CAGTGCTTTTCAAAGGTGTTGTCTGGACCTAAGCATCTTACAAAGTGTCG
TATGAGTATTTGACCAAATTGAAGAACAACATCAAACGATTGATGGATAT
ACCTGAGAAACATTCACCGAACGAGAAGGACGTCCATGGAGAAGCTCTCA
CCTTCTTGACATCTTACTTTCAATCCACGACACAAAACTTTGCTCTTGAT
CCAATCGTCCAGTACCTCGGAATGGCATCGGAGGCCAACGTAGAGCCGGG
CCTGCAGACCCTTTCATGGAAATGGAAAGAATGAAAAGGGCCATGGTTGG
TCTACAAGAACAACTCACCCTCGCTGATAACACAATCATAAAACTTCGAA
GTGGTCAAGACATTCAAAATGGTGTCGCAATGGGCGGAAAATTTGAAAAT
ATTTCTCAAGGCGGAACACGTCCTTCACAAATTATTGAGCAATATGGACA
ATTATATTCTCAAGGGCGTTTAAATGCTATGGATGATTTAGACCAGATTG
CGGGACTCTCGAAATACGGAAAACACACAGAAATGAAACAAAAAATTCTC
TACGGAATTATGGTTAGATTTGAAAAAGCATAAACGACATTCAAGTATGA
GCTATCCAGACGGTACACGAACTTTGGGTCGCATGGGTCCCCCACCCCAC
CAGGGCCAAGGACGTTTTGGTGGAGGTGGCCATGGAGGACCAGGATTAGC
CCCAGGACTTGGACAAAGAGGATTCAGTGATCCAGGCATGCCACCCTTTG
CAATGGGACCTGGAGGACCAGGTGGACCTGGAGGACAAGGTGGACCTGGT
GGCCCTGGAGGACCAATGGGAGGGCCAATGATGGGTGGACCAGGAGGGCC
AATGATGGGTGGACCAGGAGGTCCAAGACCCTTCATGTCATCAACATATG
GCACCACGTCAGGAAGAAACTAGCCTGACCACTTCACCACAAACAGCTAC
TTCAACTCCACCTGTTGCTACGCCAACTCAATCAGCACCACGACCCACCA
TTTCAAATAATGTTAGTGCTCGTATAAAAGCAGCTTTGTCTCTCGCGACG
TGCAAGACCAATTGATTCAGTTGTTGCCTGAATTTCCAAGTTTGTCAAGA
CTCCCTGGAATTTCTCAATATTCTGCAGATTGTTGTCGTGTGGCTTGGCA
TATGGTTAATCAAATCCAACCCTTAGAATTGGAGCATAGCCAAGAGAAAT
TCAATGATGCTACCCACACTCGTTTTCATGCCTCTTCAGAGAAAACCAAT
AAGATCAAAATGTACGTTTGGCCTACACTCATTGATACTGGTTCAAAAGC
AGTGCTTTTCAAAGGTGTTGTCTGGACCTAAGCATCTTACAAAGTGTCGT
ATGAGTATTTGACCAAATTGAAGAACAACATCAAACGATTGATGGATATA
CCTGAGAAACATTCACCGAACGAGAAGGACGTCCATGGAGAAGCTCTCAC
CTTCTTGACATCTTACTTTCAATCCACGACACAAAACTTTGCTCTTGATC
CAATCGTCCAGTACCTCGGAATGGCATCGGAGGCCAACGTAGAGCCGGGC
CTGCAGACCCTTTCATGGAAATGGAAAGAATGAAAAGGGCCATGGTTGGT
CTACAAGAACAACTCACCCTCGCTGATAACACAATCATAAAACTTCGAAG
TGGTCAAGACATTCAAAATGGTGTCGCAATGGGCGGAAAATTTGAAAATA
TTTCTCAAGGCGGAACACGTCCTTCACAAATTATTGAGCAATATGGACAA
TTATATTCTCAAGGGCGTTTAAATGCTATGGATGATTTAGACCAGATTGC
GGGACTCTCGAAATACGGAAAACACACAGAAATGAAACAAAAAATTCTCT
ACGGAATTATGGTTAGATTTGAAAAAGCATAAACGACATTCAAGTATGAG
CTATCCAGACGGTACACGAACTTTGGGTCGCATGGGTCCCCCACCCCACC
AGGGCCAAGGACGTTTTGGTGGAGGTGGCCATGGAGGACCAGGATTAGCC
CCAGGACTTGGACAAAGAGGATTCAGTGATCCAGGCATGCCACCCTTTGC
AATGGGACCTGGAGGACCAGGTGGACCTGGAGGACAAGGTGGACCTGGTG
GCCCTGGAGGACCAATGGGAGGGCCAATGATGGGTGGACCAGGAGGGCCA
ATGATGGGTGGACCAGGAGGTCCAAGACCCTTCATGTCATCAACATATGG
CACCACGTCAGGAAGAAACTAGCCTGACCACTTCACCACAAACAGCTACT
TCAACTCCACCTGTTGCTACGCCAACTCAATCAGCACCACGACCCACCAT
TTCAAATAATGTTAGTGCTCGTATAAAAGCAGCTTTGTCTCTCGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013467	XLOC_013467	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023979-protein	TCONS_00023979-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000468	supercontig	sc0000468:187872..196402 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.231143	0	0	0	0.319583	0	0.173099	0	0	0	0.27324	0.418508	6.40995	0.851384	0.259755	0	0	0	0	0	0	0.221364	0	0	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR031981	MIEAP_C

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023979 vs. Swiss-Prot (Human)

BLAST of TCONS_00023979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023979 (transcript) - C. hemisphaerica