TCONS_00023976 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023976
Unique Name	TCONS_00023976
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2981

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000468:226252..243376+

transcript sequence

>TCONS_00023976 ID=TCONS_00023976|Name=TCONS_00023976|organism=Clytia hemisphaerica|type=transcript|length=2981bp
CGGGAATATTGCAGCCTCAATTTGTTGCCCATGAGGTTTTGGGGGTTGTG
CAGCGAGTTTCAGGATGTAAACTCACTGTCAACTATTATTGTTAAAAATG
GTTGGCTAAATAATGGTTTGTATGATTATAATTTGATTTAAGAATGCCAA
CCAAGGAGGAGGTGACAGAATTTTTAAGGAATAATCCACAATTCGCAAAA
GAGTACTTTTTAACTCATGCATCACCAAAACTTGTGGAAACATGGGTTAT
GCAAAGATCAAGAGCTATTTCAGTACCAGATGTAAATCGTGTGAACAAAA
TTTCAAGATCTTCAACAGATCTGGTTCTCAGACCACTAACAGCTACATCA
AATGTTAGACTTAACCGATTTCTCAGCGGAACTTCTGGTCATGGAAGTGC
TAATAATCTCAATGTTGGTAATGTTGGAATACCTCCAATTAGACCTAAAA
GGAAGACATTTGAAGAGCTTTCTGCTCTCAATGAAAAAGATCTTTTTATG
GAACTAATCAGAGACATTGCTCATGAATTGGATGTTGATGCATTGTCTCA
TAAAATTTTAGTTAATGTTTCAGTACTAACAAAGTGTGATAGATCATCAC
TCTTTCTGTGCAAAGGACACAAAGATAGAAAGTATCTAATATCTAGATTG
TTTGATGTCACTGCTGATTGCACTGTGGAAGAGGCTGTTAAACCAATTGA
AGATGCTATAATTATACCATTTGGAGTAGGAATTGCAGGAAATGCTGCAG
CAACTGGTGAAATAATTAACATAGAAGATGCTTACAAGGATCCACGATTC
AACCGAAAGGTTGACGAGGAAACTGGTTACAAGACACACAGTATCTTATG
CATGCCCATAAAGAATCAAGATTTAGAGGTTTTTGAAAACTATCTTACAT
TTTGTGGAATTGGATTAACTAATGCGCAATTGTTTGAATCATCTGTTCAA
GAATTCACAAGAAATCAAGTTTTATTGAATCttgcaagaaatatttttga
agatacAGAATGTTTAGATACAGTTGTGAGAAGGATAATGACCCATGCTC
AAGATCTCATTTTATGTCAGAGATGTACTGTTTATATTANGTGAGAAGGA
TAATGACTCATGCTCAAGATCTCATTTTATGTCAGAGATGTACTGTTTAT
ATTATTGATAAAACTAAATCTGAAGAGAGCGAGGATGGTGAGaatCGAGT
TGTTTTTTCAAGCGTTTTTGACTTGATACAAGATGAAACAGGTGATCAAT
CTGTGCAAAAAGATTACTGGCAGGATTTAGCTGCTAAAagTACCGAAAAA
TCAATGGTTTATTCTGGCTTTGCAATGCTCTGTGCACAAACCGGTGATGT
AATGAATATTGATGGTTTTGGAAATGATAAAcTTTGTGGTCTTGATGATG
AGAGTTTCAAAGCTGACTGCATGTTATGCGCACCCATCTATAACAACCAA
AATGAAGTTATAGgTGTTGCACAACTTCTCAACAAGAAGGATGCTCAtag
ttttgatgaaaatgatgaagCTATGTTTGAGGGTTTTGCAATTTTCTGTG
GATTGGGTATTCATAACACGCAGATGTATGAGAAGGCAGCTCTTATGTTA
GCAAGACAAAAGCTAAACATGGAGGTATTGCAATACCATGCAAGTGCAGG
ACCTGTTGACACAGACCAGTTAGCTACTGCAGAATTACCTTCAGTCGAGC
ATTACAAGTTGGACACATTTGAATTTGATGATATAGGAATGACTGACTTG
GAAACTTGCATGGCCTCAGTTCGAATGTATATGGATTTGGATCTTCTACA
TAGGTTCAATGTTCCACAGAAGacAATGTGTAACTTCATCTTGACAGTAA
AGAAGAATTATCGACCAGTCACATATCATAATTGGAGACACGCCTTCAAT
GTTGCACAATCAATGTTTACACTTCTAAAGgctGGCCAAATGTTATCATG
GTTTTCTGATCTTGAACTGTTCATCCTTTTAACTGGATGTTTATGCCATG
ATCTTGACCATAGAGGAACCAATAATCAATTCCAGTTAAAGTCTGGATCA
GCCATTGCCCGTTTATATGGAACATCTACCATGGAACACCATCATTTTGA
CCATTCGGTCATGATTCTCAAATCTGAGGGATCCAACATTTTCGACAATC
TAAATGATGAAGATTACAAACTAGCGATCAAACTTCTGGAAGAATCTATA
CTGTCTACAGATCTTGCTCTTTATTTCAAGAAGCGTTCTGCCTTCCAGAA
TTTGGTGGAAACAAAGAAAGCCGATTGGACGCAATTCGAAAACAGAGCAG
TTCTAAGGGGTATGATGATGACTGCTTGTGATGTTGCTGCTATCACCAAA
CCGTGGGAAATTCAACAGAGAGTAGCAGAGCTTGTTGCAAGTGAATTTTT
CGAACAAGGTGACATTGAAAAGAATGAATATTCATCTGATCCTATTCCGA
TGATGGATCGTAATAAACACAGCGAGTTACCATCGATGCAAGTTGGTTTC
ATCGACTTCGTCTGTTTGCCCCTGTATAAGGTATTTTATCATATCAATCC
TTTATTGAAACCGCTCTACGATGGAGTTatcgaaaataaaaagaattggC
AAGGGACGAAAGATGTATATGATCCCAAGAAAGTGGTTGTTATAGAGCCA
CCCAAAGACACTtctcaaaatcgaaaattatcaCATGCtaccaaaacaaa
tcaaagaaaCAACCTGAAGAAAGTTTCGATTTCAGTACCAAATAATCGCA
ACAACAAATCTGCAGCATGTTCGCTCTTATAAATGTGTAGATATTTTACT
ATAAAAACCATACTGACGTTTTATTACTTTGTAATTTCAAAGGTAATATT
TTcaccttttatttatttttactaaaagttgattttatctattttagtGT
TCTATATATTTGTAAATATTGTACTATAAAGAATCAAGAGAACTGCAAAG
ATATGTAAGTTATATTCGGATATTCTAAATC

Run BLAST on NCBI

transcript from alignment at sc0000468:226252..243376+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023976 ID=TCONS_00023976|Name=TCONS_00023976|organism=Clytia hemisphaerica|type=transcript|length=17125bp|location=Sequence derived from alignment at sc0000468:226252..243376+ (Clytia hemisphaerica)
CGGGAATATTGCAGCCTCAATTTGTTGCCCATGAGGTTTTGGGGGTTGTG
CAGCGAGTTTCAGGATGTAAACTCACTGTCAACTATTATTGTTAAAAATG
GTTGGCTAAATAATGGTTTGTATGATTATAATTTGATTTAAGAATGCCAA
CCAAGGAGGAGGTGACAGAATTTTTAAGGAATAATCCACAATTCGCAAAA
GAGTACTTTTTAACTCATGCATCACCAAAACTTGTGGAAACATGGGTTAT
GCAAAGATCAAGAGCTATTTCAGTACCAGATGTAAATCGTGTGAACAAAA
TTTCAAGATCTTCAACAGATCTGGTTCTCAGACCACTAACAGCTACATCA
AATGTTAGACTTAACCGATTTCTCAGCGGAACTTCTGGTCATGGAAGTGC
TAATAATCTCAATGTTGGTAATGTTGGAATACCTCCAATTAGACCTAAAA
GGAAGACATTTGAAGAGCTTTCTGCTCTCAATGAAAAAGATCTTTTTATG
GAACTAATCAGAGACATTGCTCATGAATTGGATGTTGATGCATTGTCTCA
TAAAATTTTAGTTAATGTTTCAGTACTAACAAAGTGTGATAGATCATCAC
TCTTTCTGTGCAAAGGACACAAAGATAGAAAGTATCTAATATCTAGATTG
TTTGATGTCACTGCTGATTGCACTGTGGAAGAGGCTGTTAAACCAATTGA
AGATGCTATAATTATACCATTTGGAGTAGGAATTGCAGGAAATGCTGCAG
CAACTGGTGAAATAATTAACATAGAAGATGCTTACAAGGTATTAGTAAAT
ATTGAACACACGTATTTATTTAACAACCACAGAACCCAAACGGGCCACTG
TACTGTAATTgcaattttgaaattgaaaaagtctTGAACATGACTAAAAC
TGTCCCGTCACCAACCTTTTCGTactgtaagcaaaaaaaaatagcgATTT
GGTACCTACCGTCTTTTCTAAAGCAAAATAAGAAGGATTCGGGACTGGTA
ATATCAAAATTACTTTGGTATTGGGTGTCttaattatacaaattatacaC
TTCCCTGATATCAAATTCAAGCCTCCGTCGTCCATTTTTTAGAAATAGGC
CATGGCCAGTGCCACCACAAAACGTTTcaccttttttcaaaatgtccgtg
ACCAAACTCTTAGAATTGATTttagtcaatttgagggtgctgatttggaa
tttgattttttgcttttcCTGGCAAAATTGCAAGACCTGAGATATCATGA
TTTTTGGgcggtcttcaaattaaaaaaaatacataccaCGTGATGGAGCT
CTTCAGACTGAGCAAAAAATGAATTACATCAAAGTCCCAACtcctctaga
tcaaaagttatgggcatatttgtggtcaaaaaaggtgtttaattttgcat
aaattatgcagattgtggtgaaatttcttgttttccatcagtttttgacc
acaaaaaccataacttttgatctagagaagttgggactttgatgtaatac
attttttcctCAGTCTGAAGAGCTCTAccacgtggtataggtcttttttt
aatttgaagacacCCCAAGAATCATGATATTTCAAgtcttgcaattttgc
ctgacgcaaaaaatcgcaaattaattaaaaatcaCAGACTTCCAACTTTA
AAAAACACTTGACATGAAAGATTGAAACTAACAACTATTTCACCAAATTT
GAAACCTTTGAAAGCCAAATTAATTATTGATGTATTTAAACAGGGGTCAG
TGtgcctcaaaaaaattgtgatacCTAATATAATTTGTATGAATATCTAT
ATGTATTTATCACAGCAGCACTGTACTGATTGGTTTATTGTCTTTCCTTA
TTACATAATTATTAGCCTTTTTTTGGTCTATAGGTGGCATTCAATCTCCT
ATGATTGAAAGGTGTTTGTTTTCTTATTTGGCCCTTGTGGTATTGTTTTT
ATTTGCAGGATCCACGATTCAACCGAAAGGTTGACGAGGAAACTGGTTAC
AAGACACACAGTATCTTATGCATGCCCATAAAGAATCAAGATTTAGAGGT
AAGAAATCAAGAGTGTTTTAGTgctttaaaaaggtttatttctCAAACAA
GGGAACGTTTACTGATActcttttgaaagtttttatgtttatgataatta
gaacgttttctatcttataatcaaaacTATCACTTGTATAAAAAAGTAGA
CAAACTAGTCAAGACATTCACTATGCCAAAAAATATGATGACTTGATGTT
TGTGGCGTTTAAGGTATTCTGACACCTTCTGAACCAATACATGCTGCCCC
ACTCTCAATTTATTGTAAAAAGAAATCTGGCACTGtccatttgtttttta
tttatttgattttaaaatttttatacaaaacgCAAGTGTTGTTTATTAAA
AATATCTATCAAAATTATtatctttatttataaacaaGAGAAACAGGAAA
ATATACTGTACAAATCCTTTCATATTGTTGGATATGATAAGCGTTTTTCA
ACAATAACTAGATGACTtgaaagcttttaagattgggTATTGTGTTAGAT
AAAAGAcaaattttggacaaaaacTCAAATTGAAGGTTTCAAACATACCT
TAATCACGATTTGCTTGTATCAAGTTAGGTAAAGCTTACTTTTTATTCTC
TTTGTATCCTTTGATTCTTTAACAATTTTCTAATTGCTATGCTTTTCATT
ATTATGATATAGGTCATAGGTGTTGCTcaaattattaacaaaaaagAAGG
TGATCAACGTTTTACAGCAAAGGATATAGAGGTATATAAGATGATTGCTG
AAAATCTGTACAAAAATACTACAAACTTTGTTATATCTTGTATTTGATTA
Gcctggggtccacttaaagcttttttatagactgtatggcgcgattaagt
ggcagTAGTAGTATATATGGTGATATGCTTGATATGgtgatttttgttgt
ttttggaaggtaaaagcagcatgaagcaatgtttttatttgagaataaga
gATTAATCTGTTAGtgttattgatgtttttttctcatttccgattatatc
tttcaactccaagtagtttttttgttatttggatttttataacattttct
cCCAAAATGGCAACCTCGCCAAACACTCCTAGCCTACTttactggactca
gcgtcataaaaattatcaaaaagcaaagttcagccaaaagtagactctag
tctggTTTCTGATTGAAACTACTTTGTAAGCAATGACATTTTCGTgattg
gaaaataaaataattttttggcagCAATTAGTTAAAGGGTAAAATTTAGT
CAATTAGAAAGGGAAGTTACTTTTATTTAGCTATTCTTACCTTGTCTTTT
CTTCCTTCCACAAATCATACTTTTATCAAAAGTCTACTTCAAACACAGAA
Taaggtcatttttgaaaaatatctattatatccatttttcttttaggtca
tttaaatttttatttcagacaCTTCAATGGTCTCAATTCATTATTTTCTG
GTGCAGGCTGTCTGTTAGAGACTCATATCCATTAtgctttaaaaaactta
attttagaAGGTCTTGGTCCAACTGCAAAGAATAATTCAATCCTGAAAAT
TGGACcaaaaattacaattaaaaCTTATTTACACTGTGTATCAACCCTTA
GCAATGAAATCAGTTTTTGAGGGGACTGGTAATATATTTTCAAGGAGAAG
TTTTTCCACAGCATAGGCATTTTACTTTTAGGCTGCCTCTAAAATAAACC
AAAACTTATATTCTGTATAAGAAACATTTTCCTTGAGTCTTTTACGTGGA
GTGCAAACTATTTTAACATTCAAGAAGCTcaaataaattgaaattaaacT
TTACAGTATCACTTCAAtacaaaatttgtatttttcacaAGAGTACTCCT
ACGTTGTGTTTTCGATTCATTACTTGTTCCCTCAAAAGCTGACTCCGTTG
CTAAGGTTTGAAATGTGTATTACAAGATAAATTAACCCTCCTTATTATGA
GATTAGATTTTTTGTGCAGCCTGTTGGTAACACCTTATAAACAATGATAT
AAGGGGGAAGCTTGGTAAACATGACATGCAGAGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTATCAAAATTATtatctttattt
ataaacaaGAGAAACAGGAAAATATACTGTACAAATCCTTTCATATTGTT
GGATATGATAAGCGTTTTTCAACAATAACTAGATGACTtgaaagctttta
agattgggTATTGTGTTAGATAAAAGAcaaattttggacaaaaacTCAAA
TTGAAGGTTTCAAACATACCTTAATCACGATTTGCTTGTATCAAGTTAGG
TAAAGCTTACTTTTTATTCTCTTGGTATCCTTTGATTCTTTAACAATTTT
CTAATTGCTATGCTTTTCATTATTATGATATAGGTCATAGGTGTTGCTca
aattattaacaaaaaagAAGGTGATCAACGTTTTACAGCAAAGGATATAG
AGGTATATAAGATGATTGCTGAAAATCTGTACAAAAATACTACAAACTTT
GTTATATCTTGTATTTGATTAGcctggggtccacttaaagcttttttata
gactgtatggcgcgattaagtggcagTAGTAGTATATATGGTGATATGCT
TGATATGgtgatttttgttgtttttggaaggtaaaagcagcatgaagcaa
tgtttttatttgagaataagagATTAATCTGTTAGtgttattgatgtttt
tttctcatttccgattatatctttcaactccaagtagtttttttgttatt
tggatttttataacattttctcCCAAAATGGCAACCTCGCCAAACACTCC
TAGCCTACTttactggactcagcgtcataaaaattatcaaaaagcaaagt
tcagccaaaagtagactctagtctggTTTCTGATTGAAACTACTTTGTAA
GCAATGACATTTTCGTgattggaaaataaaataattttttggcagCAATT
AGTTAAAGGGTAAAATTTAGTCAATTAGAAAGGGAAGTTACTTTTATTTA
GCTATTCTTACCTTGTCTTTTCTTCCTTCCACAAATCATACTTTTATCAA
AAGTCTACTTCAAACACAGAATaaggtcatttttgaaaaatatctattat
atccatttttcttttaggtcatttaaatttttatttcagacaCTTCAATG
GTCTCAATTCATTATTTTCTGGTGCAGGCTGTCTGTTAGAGACTCATATC
CATTAtgctttaaaaaacttaattttagaAGGTCTTGGTCCAACTGCAAA
GAATAATTCAATCCTGAAAATTGGACcaaaaattacaattaaaaCTTATT
TACACTGTGTATCAACCCTTAGCAATGAAATCAGTTTTTGAGGGGACTGG
TAATATATTTTCAAGGAGAAGTTTTTCCACAGCATAGGCATTTTACTTTT
AGGCTGCCTCTAAAATAAACCAAAACTTATATTCTGTATAAGAAACATTT
TCCTTGAGTCTTTTACGTGGAGTGCAAACTATTTTAACATTCAAGAAGCT
caaataaattgaaattaaacTTTACAGTATCACTTCAAtacaaaatttgt
atttttcacaAGAGTACTCCTACGTTGTGTTTTCGATTCATTACTTGTTC
CCTCAAAAGCTGACTCCGTTGCTAAGGTTTGAAATGTGTATTACAAGATA
AATTAACCCTCCTTATTATGAGATTAGATTTTTTGTGCAGCCTGTTGGTA
ACACCTTATAAACAATGATATAAGGGGGAAGCTTGGTAAACATGACATGC
AGAGGGTATTATTTTGATAGACAAAAATACATTGCACTTTTATagggaaa
aattgtaaaaagttcttattaaaTTTCCCTTGACATTATCAAATCTCACC
CAAGACCTGAGAAAACCCAAATTAGTCATGTCTCATGCTCAAAAATAAGA
TACAGACCCCATGAGGTTCCTGTGccaaattttaataaattgtTTAAGAA
TGGATCAGATATCTGGTCCACagtaatacaataatgaccggttagtgagg
gctgtactgagaaatattgcccgaggtcaagtaacgactgagcttgcgag
gttgttgcgttggcCGAGGGCAATATTTGCAGTACAGCCCAAAAacccgg
tcattattgtatttgttaaccgtttccttcagcttcgactgatttttagc
gctttatccaggaaaaatagcgaaataaagtgaaaaaaacaacgggaaag
agatcaaaaatttttttattttctgacgtcaaaaacaaaaaatgacagaa
ataatgtcaacgcattgttcattttcctttgagaaagtgacgtcacaatg
aattttcctaacgacgggcaactctgagtattgttaaccggttacttttt
cgaagagGGCTATtacgactttttgcgcaatgcaattggttctttttgca
tgacgacgggcctacattgtccagagttgcccgtcgttagcaaaattcat
tgtgacgtcactttttcaaaggaaaatgaacaatgcattgacatcatttc
tctcattttttatttctgacgtcagaaattataacaattttttatccctt
ttcgcttgttttttttcgctttatttcgctatttttcctggataaagcgc
taaaaatctaactaaccggtcattattgtattagtgtAGGCctgtcgtca
tgcgaaaagaaccaattgcattacTCAAAGTTAAGATTACTGATCTAAAA
GGGAAGGAAGTAAGTTCAATGTTAAAACTGTGAagactcattttcaaatt
tggtGTTTCCTAGGACCATGGAAATTATTGGTAATTAAAAATAAactatc
tgattatccctttaataaAAGCTATCTTTAAGATGTAAGATTTTTGTGCT
ATTTTCCCTTAATAGGTTTTTGAAAACTATCTTACATTTTGTGGAATTGG
ATTAACTAATGCGCAATTGTTTGAATCATCTGTTCAAGAATTCACAAGAA
ATCAAGTAAGAATTTTTATTACCATTACATTTTATAGAGGGTATATTATA
TGCCCATCTTGGAATACCATTCTTATTTCATCGATAGTGTCTTCTGGTGA
AATATGATTACGAAAGTCTTTTAGCTTTTCTTCCTCCACCTGATTCAGTA
ATTTGTTGAATGGAAAAGTAGACACTCCGTGATGAACTTGTCTTTAATAA
CAGCCAATGCATTTCTTTTCTAACAGAAAGATATGTTGATGAAggttaaa
atgcaatttttttgcATTGTTTCTTTGTCATGCAACTTCAGACACCGGAA
GCTCATTCAGGGTTAAAAGCAAGCTTTCTTGAAGACTGATTTAGACTTTT
AAAAAATGGGCTACCTCCTTTTCTTCCTACAATatgattaaaattttatt
aatgTTTTACTTACACCAATAGCCCTAAAAcatacaaaatatttatttta
gttttgtCCTATAATATCGCAAAAtgtccaatctcaaaattagtttttat
gaaaactgattttgtttttgttttgctaaCTTAGAACTTTTCTTGTCGCT
AGAAGGATCGACCTCAAAATATTTAAAGTTAGcatagaaaagaaaagaaa
agagaatcTCAGTTTTCTCAGACACTGATTTCAAGATTATACCTTGCCTT
GATGGCAgcgatacatttttatcattattttctcTAATTTCAGGTTTTAT
TGAATCttgcaagaaatatttttgaagatacAGAATGTTTAGATACAGTT
GTGAGAAGGATAATGACCCATGCTCAAGATCTCATTTTATGTCAGAGATG
TACTGTTTATATTANGTGAGAAGGATAATGACTCATGCTCAAGATCTCAT
TTTATGTCAGAGATGTACTGTTTATATTATTGATAAAACTAAATCTGAAG
AGAGCGAGGATGGTGAGGTACTGAGAacgtcttttttattttatatgatA
TGGAGCATGGATATCCAAGCTATTAAACAATATTTTATTCTGAtggttct
ggtttacagccttgTCTTCTTAATATGCTtatcattccaaaatcaaaaGG
CATATGCATACCCAATAATTTTGCTCAGCTAAGTTAAGGCAACCCTGGTT
ATGAAATACCTTAATGATTTAAGATATTATAAAAGATAACcttattaact
tttttttacagaatCGAGTTGTTTTTTCAAGCGTTTTTGACTTGATACAA
GATGAAACAGGTGATCAATCTGTGTAAGAAATTTACAATCATATTGTTCT
ATAATTTATCTTCACTTTTCCCTGGTTTACAAGTTTTGAATAGGGTCAGC
CATATAATCACATTTCAGCTAGAATTTTTGGGCTGCCACCTTCTGATTGT
GTCTCATAGCGCCCATTTTNCAGCTAGAATTTTTGGGCTGCCACCTTCTG
ATTGTGTCTCATAGCGcccgttttgaaattattattaCCCCATACTGTGG
CCTCTCAGTTTAAAgagttttaaagctcttttgaAATTGCTTGATTCCCT
TCATAACATTAGCGACCAGTGCATATTGTTGATATTGATCTTGAATTTAT
CATTTTAAATTGTAGGCAAAAAGATTACTGGCAGGATTTAGCTGCTAAAa
ggtttaatttttattttccattattttttccAGTATCTTTGTTCATTCAG
TAAATCTAGGGCACTTAATTGAATATCATTTCATCACTATGATAGAAAGT
TTAGGACTGGATTCCTGAGTAGCTGTGTTTATTTGGCAACTAAAGCCAAG
GCAAACCTGTGCTATGTCTTGTACACACGTTCAATGAAAATAGCTGTGTT
AGTGTTCAGCTTAAGCTTGTATTAGCTTGTCCGAACCATAGAAGTGGTCA
GCTCTAATGGGACGAATCCTAGACCGTTTTATAGAGAATAAAACATCCTC
TTTAAATGAACTTGTAAATTGTTAATTCATTTTCTCATTTTATCTCACAG
TACCGAAAAATCAATGGTTTATTCTGGCTTTGCAATGCTCTGTGCACAAA
CCGGTGATGTAATGAATATTGATGGTTTTGGAAATGATAAAGTGAGCAAA
TACAAGAATATTCTACTGTTCTGTAATCATCTTTTTTGACCAACCCTGGT
GGGTGGAGTTCCTTTAGATTAACCTGTGTCCTTCCTTCCGTCcatccgtc
cgtccgtctgatgcaagcttttctcaggattgactcattcgattattttg
cacaaagatgcgtattagcaatgcccaagaCATAGTCGAGTCTGATTtac
gagaaaaatatttttccggccgaaaatgccggaaatatgccgttttactt
ccttttctattttcattctatatttatcattaggtaggtccgaTATGCAT
TGTGCTTGTTTCATaaagtattcaatttttcaagaattatttcactAACT
TCATGAGTACCTTATAAACTAATGTTTATGATTGTACCAATAATTAAAAC
TTATTTGCATTGGTTGATGGGAGTTACCTCTCTTAAGAATAATACAACAG
CGTCTTAATATGAACTGATGATAGAATAACAAATTTTAGATAAAATCTTC
TACGTTAACGAGTAAAGTGTCTGTAAAGTGTTATTATCTGGTGCCATCAA
AAATGATGAATAGAAAGTCTAATATATACTTGGTACAAGGATGAATGAAT
CTCATTATTTTACTTTAATTAAAGtcataaatttaattttattttgtttt
ggttttagcTTTGTGGTCTTGATGATGAGAGTTTCAAAGCTGACTGCATG
TTATGCGCACCCATCTATAACAACCAAAATGAAGTTATAGGTAATTTTCA
TGTCAATCTTTTGGAGACTCTTCACTCTTGAACTTTTTGAAGGGTCCTTT
TGACTTTTTAGTTACTGAGTAcctatttttgattttttaagataCATTTT
AATGCACAACGCATTTTAATTCCACTGTTTTACACAATTCTTTTTACCAA
GCACAACaagaatttctttaattttaaggTGTTGCACAACTTCTCAACAA
GAAGGATGCTCAtagttttgatgaaaatgatgaagCTATGTTTGAGGTAT
GAAACATTATTTTAGCTTTTCAttccaaaatttcattttattttaggCAA
AAATTTCGTACAAGAGAttcgtttttcactttttctccATATTCAAAGAT
AAGTCTCAATCACTACGTATTTAGTTCAATCAATATTAATCTCTTTCTTT
TTCCTCCTTTAGGGTTTTGCAATTTTCTGTGGATTGGGTATTCATAACAC
GCAGATGTATGAGAAGGCAGCTCTTATGTTAGCAAGACAAAAGCTAAACA
TGGAGGTAACATTTGTTCAATTGATTTACACTCCTAAATTTTAAGTGTCT
TTTAAGAATACATTGCTTGTCTTTTGACCAGCTAAATTTACacattaaaa
gttttaaaaggcttaaagttttaaagtcttttttctgTATTTTAGTAATA
CTACATACTATGCCCTTAGTTGAACTGGAAtctattttattcaattttat
taTCTAGGTATTGCAATACCATGCAAGTGCAGGACCTGTTGACACAGACC
AGTTAGCTGTAAGTTCAACATTGTTTTTATCGGATTTTCTTGATGGCTGT
TCAATGACCTTATTGTCCTTATCAGCTATATAACGCCGGCCCTATTGGAG
ATAATTTTTGACTTATGGGGCATGATAGACCGACGTTAGATGTGCCGTTG
AAAAAGGGGACAACATTTTCAACGTAACAGTGGTGTTAATGTTTGACTGT
TTTTCATTGATTTACGTGCGTGGACTAATGCCCAACTAAAAGAAGAAAGT
TACCCTATGTTAGTCTCCATCCAAAATCGTCgatgaaatttttaacaatt
tgcGAGACGAGTTAGAAGTTTAATGCAATTTTCAGTTAATCTTGACTATT
TCGAAGTCATAGTAAcgattttaaaggttttggcGTTGTTTATGACCATT
GATCACGCGAGAtgcattgtttctgacatcggtgtaagaatatattttga
ctaaaaaattgCCTGTAATTCATCAAACGAAAAGATTTTTTatggctcaa
aaatctttcaaatcacgatcacgtttggACTTCTGATCACGTAAAAGtca
cgtaatcacgctaaaAAAAAGTTCCTATCAGGCAAACTGCTTCGGGGGCT
TCATTAAGGTTAGCTTTCTGAAGATGAAATATTCAGATGTACGGATGAGG
GGTTTGAAAATTATGTCTTGTTAATAATGATGATATAATAAGCTGTgtat
aaaacataaaattccCTTCTTCTATTCAGACTGCAGAATTACCTTCAGTC
GAGCATTACAAGTTGGACACATTTGAATTTGATGATATAGGAATGACTGA
CTTGGAAACTTGCATGGCCTCAGTTCGAATGTATATGGATTTGGATCTTC
TACATAGGTTCAATGTTCCACAGAAGGTAAAAATTAGGTTAACGAATCGA
CCATTGGAAAAGACGCACTAAAATTTTATCGAAGTTGCAAAAATACACTT
AAACTATGTCACTAGAAGATATTCGAAATTACTAGTTACAAGATGTGAGA
GCACTTCTTCTTACACTATTGGTATCGCCTCTCTAATTGATCCTACAAGC
TTAAAAATTCAGGGGCGGCTGGGGAGGTTTAACACCTAATTTATGGCTGT
ACCATTATAGAGCATTTCTACCTTTTGCAGTAATTAGTGCTTTTAAGAGA
TGATTTGAGCTTATTCCTTATTCCCTTCAAATGGGACTGATTatttttag
gggttgatatgaTGATATGACTAGTTTCTAACGCCGATACTTTCCAGCTT
CTTTTTAAATTAACCCTAAGTTGCTTCtcattaattttctttattttctt
tagacAATGTGTAACTTCATCTTGACAGTAAAGAAGAATTATCGACCAGT
CACATATCATAATTGGAGACACGCCTTCAATGTTGCACAATCAATGTTTA
CACTTCTAAAGGTAAGATCTTCATAATATGATTAAGTGATTAAAAGTGAT
GCTTTAGTGTTAAAGACTATCAATAAATTAGGTTGATTAGTGTTTTTAAT
TATAATTAATCGTAAAATCATTAGTCTGACTGTGTTGTGAATATTTCGTA
AGGATTCCTGTTTCTTTTCAATCCGCTTGAACAGGAAACCTTTTACGACT
TTCCTGCTTATAGTTCTCCTTTTatgatgttttttattttccaggctGGC
CAAATGTTATCATGGTTTTCTGATCTTGAACTGTTCATCCTTTTAACTGG
ATGTTTATGCCATGATCTTGACCATAGAGGAACCAATAATCAATTCCAGT
TAAAGTATGCGGTCTTTGAGGTTTCGTGCCATCAGATATTGATCATAGCT
ATAAATAATTTAAAGTGACACCCGATACTTCAAAGGAACTCACAACAATC
AAAACGTCACAACAACTTTTGAAGTACACAGTctaaagatcaaaacaaac
acttgaatctttttttttcccaACGAGAATATCTCTTGTTATGATGTATT
TGAAACTCGATTCCTGTCCTGTCACCTGATTTTGGTCagaatcaaaataa
agaaaacaactttttgttGCGAGAAGTATATGACCCTTATCCAAAGCCTT
ATAAAGTGTTTCTCACTTAATTAGATCTCTTACTAAATTCGTActctatt
ttgattttaagcTAGAAACACGATCATGTAAAGCTAAAGAATGTTCCCCA
TATAAATTCAACAACTCCTGAATGATTTTGTTCGTTCTAAAAGTTTTGCC
TCCAAACTATCATTATTTTTAGTCTTATGTTAGTAGGACCAaaattaata
aaacaaaaattgatattttcagGTCTGGATCAGCCATTGCCCGTTTATAT
GGAACATCTACCATGGAACACCATCATTTTGACCATTCGGTCATGATTCT
CAAATCTGAGGTATTTATAAGAATTGACTGATTAGATTTCAAACCTTCAA
AAGACTCGAGATCAACTCATCTGTTTATATAAAAGTATTGCAAAAGCCAC
ACATTTTTGCCTCATCTCCCCTTCCCTCAACAATCATACTATGATATAAT
AACATCTCACACTTTCATTTCAGGGATCCAACATTTTCGACAATCTAAAT
GATGAAGATTACAAACTAGCGATCAAACTTCTGGAAGAATCTATACTGTC
TACAGATCTTGCTCTTTATTTCAAGTATGTTATTAGATGTTCtaaagatt
ctttgaaaagatAGGTCAACATTATGTCATTATGTCACTTTGTTCCCTAG
TGCGTATGAGAAGTTTCTTTGAAGACAACATTTGTCAATTCATATTTTTA
GGAAGCGTTCTGCCTTCCAGAATTTGGTGGAAACAAAGAAAGCCGATTGG
ACGCAATTCGAAAACAGAGCAGTTCTAAGGTAACCTTTCGCTTAGATGTC
AACTAATCAGGTCATATTTTCCTCTAGAAATGATGTCCTCAGCAACTTTG
TTTTACTCGACTATCAATTCCGAAATAATATAGCTCTTATAAGTACTTCA
TCTAGTTTTCATATTCATCACGAAAACTAAAAAACTTTCGGCGCCAGTAC
TTTGAATCAGTCTTTCTTTTCGGAAGATATTATCTTCATCATTAAGGAAG
TCATAAACAGCGAAGATTTTGCACTGTGTAAAAACGTGCTGCTGTTGTAT
TACTACCCACACGCATTCTTCTAATTGCGAAACAGTTCATCCCGCATCTG
ATATTGCAGATAACAGAAATTTGGTAGACCCATCAACCATTTTTTGCCCG
TTTGAGTGCTCTTCCTAGATTATAATGATGTTCTATCGaatctaattatt
cgttttattttTGGTTCTTTCGATAGGGGTATGATGATGACTGCTTGTGA
TGTTGCTGCTATCACCAAACCGTGGGAAATTCAACAGAGAGTAAGACCCC
CAATGATTAGATTTTTATCCGTTCTTGCCCTAGCATAGAAATGACATGAT
CGAGGTTTGTTCTATTgttgaaagccaaattttcgTATGTATTGAGGCAA
ATAACCATTGttattttggcgttatttattAGAATGTTTGTTAAGAACCC
CGAATTATCTTTACTTTCAATCAATATTATTTAATTCCTGGTGTTTAGTA
ACTTTCATTTCCTTCACATTATATACGTCTCGATACTTTTTAGGTAGCAG
AGCTTGTTGCAAGTGAATTTTTCGAACAAGGTGACATTGAAAAGAATGAA
TATTCATCTGATCCTATTGTAAGCGCTGTTTTCTCTTCTGATTACCTTAC
TTTATTAGGATCAATTTATTTACTGTTGATGCGTGGCAGGCACACCATGA
GTAGGGACTCGCATAATTGATTCAATTTTCGTATAATGCATTTTTTTCTT
CCGTTATTATGAGTTTTATTATTGTCGTTGTCACATCCGGCCTATTGTTT
TGATAATTACTCGTTTGTTCTCTCTCATCGGTTAACTGATATTGTCACCG
GTTGTTACCTTAATTATATTTAATCGATTAACCTTTTCGTAATCAACCGA
ACAATACAATATTCTGTAAAACTGATTAGCCAATGTATCATTTTCATTTA
CGTAAAAGAATTAAGAAAGATAAAATTCCTAACGATTTGTTACTTCCACG
CATACATAATTATTACGATTTCAATATTCTTTTCAATTAGATTATTCTGG
ATTATTCTCTACCTATGAtactttttgtttacttttaatTCTAAGCCGAT
GATGGATCGTAATAAACACAGCGAGTTACCATCGATGCAAGTTGGTTTCA
TCGACTTCGTCTGTTTGCCCCTGTATAAGGTAATTCACCATCCTTTTGCC
TTTACTAGCTTCCATTTTACACTAATAATGAAGCATGGCTTTCCTACTGC
ATAGAGGACTGATGCAATGTTTCACTTGAGTGTAATCATTCCGAAACAAA
CTGTTAAATAACTTACAccattgaaattaaattttgaaataaatgctGAA
TCATGAAAATGataattgacaaaaaattaagaaattgtgTCACGTCGTGT
TTATCATTTGAATTCCCATCAAATTCCTTCTCGAAAACTGGGTAAAACCT
GATTAATTTAAAGGAATCTCAAATTGCCCTCTGTTCATGTTTCCTTTGTT
cgtttattcaaaatttcttaatttaatttctttaaaaacataCGAAAAAA
CTTATTAGTGACAAGTATAAAACAATGGGGTTAGTCCCATGACTATGTGC
CTACCTCATAGACTGATAACCATAATGGAagaaattctcataaaaaatgg
TGATATAGGttacctacacgtttttttttttataaggaacacgtttataa
ggaactcgaggctgaaaatggttcaaaaaataaggaattgttaaggaact
gctcaggctgagaataagtggatttgaaaataatgtaccttattgggact
aatttgaccaaattttgatctttcaaggggcaaaaaattcaaaatttcct
atgtaataaggaactcgataaggaactttgagactgaaattctctttaaa
aataaggaactccaggctcagagcaaagttaaggttccttataaaaaaaa
aacgtgtagtagttgatgatttttaaaaagCGGAAAAAGATATGTTTTCT
TTTACTTTGGTCAGTTAACGGTTTACCTTATGAGAAAGCTATCCTATTTT
TAAATCATGATGAGTCAACGATgaataattgataaaaacatTCCCCTACC
AAgctttttgtttggtttttccGTGATGAGTGGGAACTTTAGAATTAACT
GAACTCTTGTTTTTCTAGGTATTTTATCATATCAATCCTTTATTGAAACC
GCTCTACGATGGAGTTatcgaaaataaaaagaattggCAAGGGACGAAAG
ATGTATATGGTAAGATGATTATCATGTCAAGAAAAATCGACAGATCAAAT
TGCTTTTGGTTTACAAAATAATGAATGTTGCCTACGTCACAATCATCTGA
TATTCTCTTGCCAACACAAATAGTTTATATTTGATGCGTTTTCACACAGT
GAATTCGTGATTGAATATGATTCGATTCAAATGACGTAATGTATCATTCT
AGAAAGACAAAAACAGATTGTCGAGTTGGCCACAACTttcatttccaatt
ttttctcaCTTTCAGATCCCAAGAAAGTGGTTGTTATAGAGCCACCCAAA
GACACTtctcaaaatcgaaaattatcaCATGCtaccaaaacaaatcaaag
aaaCAACCTGAAGAAAGTTTCGATTTCAGTACCAAATAATCGCAACAACA
AATCTGCAGCATGTTCGCTCTTATAAATGTGTAGATATTTTACTATAAAA
ACCATACTGACGTTTTATTACTTTGTAATTTCAAAGGTAATATTTTcacc
ttttatttatttttactaaaagttgattttatctattttagtGTTCTATA
TATTTGTAAATATTGTACTATAAAGAATCAAGAGAACTGCAAAGATATGT
AAGTTATATTCGGATATTCTAAATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013466	XLOC_013466	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000468	supercontig	sc0000468:226252..243376 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33257	2.7416	1.40516	1.11228	7.57231	5.4128	3.08915	3.39419	3.69926	5.92385	4.81429	5.79175	4.37286	4.23495	2.53131	3.25941	2.05162	3.37949	6.62732	8.22833	5.00774	4.36154	2.487	2.15649	108.386	67.0284	3.30262	1.75087	11.8966	9.71501

Blast

[Close]

BLAST of TCONS_00023976 vs. Swiss-Prot (Human)
Match: PDE11 (Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Homo sapiens GN=PDE11A PE=1 SV=2)

HSP 1 Score: 455.677 bits (1171), Expect = 2.012e-143
Identity = 221/509 (43.42%), Postives = 328/509 (64.44%), Query Frame = 2

Query: 1091 VRRIMTHAQDLILCQRCTVYIIDKTKSEESEDGENRVV-FSSVFDLIQDETGDQSVQKDYWQDLAAKSTEKSMVYSGFAMLCAQTGDVMNI-DGFGNDKLCGLDDE--SFKADCMLCAPIYNNQNEVIGVAQLLNKKDAHSFDENDEAMFEGFAIFCGLGIHNTQMYEKAALMLARQKLNMEVLQYHASAGPVDTDQLATAELPSVEHYKLDTFEFDDIGMTDLETCMASVRMYMDLDLLHRFNVPQKTMCNFILTVKKNYRPVTYHNWRHAFNVAQSMFTLLKAGQMLSWFSDLELFILLTGCLCHDLDHRGTNNQFQLKSGSAIARLYGTS-TMEHHHFDHSVMILKSEGSNIFDNLNDEDYKLAIKLLEESILSTDLALYFKKRSAFQNLVETKKADWTQFENRAVLRGMMMTACDVAAITKPWEIQQRVAELVASEFFEQGDIEKNEYSSDPIPMMDRNKHSELPSMQVGFIDFVCLPLYKVFYHINPLLKPLYDGVIENKKNWQ 2602
            V++IM  AQ L+ C+RC+V ++        ED E+ VV F+  F+L+  +    + +  + + +   S    ++ +  A L A TG  +NI D + + +     D+   F    +LC PI+N+ +++IGVAQ+LN+ D   FD+ D+ +FE F IFCGLGI+NT MY++     A+Q + ++VL YHA+    + D+   A +P V    +D   FDD  +       A++RM+M+L ++ +F +  +T+C ++LTV+KNYR V YHNWRHAFNV Q MF +L         +++E+  ++ GCLCHDLDHRGTNN FQ KSGSA+A+LYGTS T+EHHHF+H+VMIL+SEG NIF NL+ ++Y   ++LL++SIL+TDL LYF++R+ F  LV   + DW    +R + R M+MTACD+ A+TKPWEI ++VAELV SEFFEQGD E+ E    P  + DRN+  ELP +Q+ +ID +C+PLY+    +N  LKP+ D V  N+  W+
Sbjct:  407 VKKIMHRAQTLLKCERCSVLLL--------EDIESPVVKFTKSFELMSPKCSADA-ENSFKESMEKSSYSDWLINNSIAELVASTGLPVNISDAYQDPRFDAEADQISGFHIRSVLCVPIWNSNHQIIGVAQVLNRLDGKPFDDADQRLFEAFVIFCGLGINNTIMYDQVKKSWAKQSVALDVLSYHATCSKAEVDKFKAANIPLVSELAIDDIHFDDFSLDVDAMITAALRMFMELGMVQKFKIDYETLCRWLLTVRKNYRMVLYHNWRHAFNVCQLMFAMLTTAGFQDILTEVEILAVIVGCLCHDLDHRGTNNAFQAKSGSALAQLYGTSATLEHHHFNHAVMILQSEGHNIFANLSSKEYSDLMQLLKQSILATDLTLYFERRTEFFELVSKGEYDWNIKNHRDIFRSMLMTACDLGAVTKPWEISRQVAELVTSEFFEQGDRERLELKLTPSAIFDRNRKDELPRLQLEWIDSICMPLYQALVKVNVKLKPMLDSVATNRSKWE 906

HSP 2 Score: 174.866 bits (442), Expect = 1.283e-44
Identity = 95/252 (37.70%), Postives = 148/252 (58.73%), Query Frame = 3

Query:  423 VGIPPIRPKRKTFE-ELSALNEKDLFMELIRDIAHELDVDALSHKILVNVSVLTKCDRSSLFLCKGHK-DRKYLISRLFDVTAD-----CTVEEAVKPIEDAIIIPFGVGIAGNAAATGEIINIEDAYKDPRFNRKVDEETGYKTHSILCMPIKNQDLE-----------------------VFENYLTFCGIGLTNAQLFESSVQEFTRNQVLLNLARNIFEDTECLDTVVRRIMTHAQDLILCQRCTVYI 1088
            V +P   P    ++  L   NE+  F+EL++DI+++LD+ +LS+KIL+ V ++   DR SLFL +G    +K L+S+ FDV A      C+  E    ++    +P+G GI G     GE +NI DAY+D RFN ++D+ TGYKT S+LCMPI++ D E                       V + YL FCGI ++NAQLF +S +E+ R++ LL +  ++FE+   L+ +V++IM  AQ L+ C+RC+V +
Sbjct:  180 VNLPRYPPTAIDYKCHLKKHNERQFFLELVKDISNDLDLTSLSYKILIFVCLMVDADRCSLFLVEGAAAGKKTLVSKFFDVHAGTPLLPCSSTENSNEVQ----VPWGKGIIGYVGEHGETVNIPDAYQDRRFNDEIDKLTGYKTKSLLCMPIRSSDGEIIGVAQAINKIPEGAPFTEDDEKVMQMYLPFCGIAISNAQLFAASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLL 427

The following BLAST results are available for this feature:

BLAST of TCONS_00023976 vs. Swiss-Prot (Human)

BLAST of TCONS_00023976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PDE11	2.012e-143	43.42	Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 1...	[more]

You are here

TCONS_00023976 (transcript) - C. hemisphaerica