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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023975 ID=TCONS_00023975|Name=TCONS_00023975|organism=Clytia hemisphaerica|type=transcript|length=3108bpRun BLAST on NCBI transcript from alignment at sc0000468:226181..243376+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023975 ID=TCONS_00023975|Name=TCONS_00023975|organism=Clytia hemisphaerica|type=transcript|length=17196bp|location=Sequence derived from alignment at sc0000468:226181..243376+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023975 vs. Swiss-Prot (Human)
Match: PDE11 (Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Homo sapiens GN=PDE11A PE=1 SV=2) HSP 1 Score: 435.647 bits (1119), Expect = 1.719e-135 Identity = 206/448 (45.98%), Postives = 297/448 (66.29%), Query Frame = 3
Query: 1413 KSTEKS-----MVYSGFAMLCAQTGDVMNI-DGFGNDKLCGLDDE--SFKADCMLCAPIYNNQNEVIGVAQLLNKKDAHSFDENDEAMFEGFAIFCGLGIHNTQMYEKAALMLARQKLNMEVLQYHASAGPVDTDQLATAELPSVEHYKLDTFEFDDIGMTDLETCMASVRMYMDLDLLHRFNVPQKTMCNFILTVKKNYRPVTYHNWRHAFNVAQSMFTLLKAGQMLSWFSDLELFILLTGCLCHDLDHRGTNNQFQLKSGSAIARLYGTS-TMEHHHFDHSVMILKSEGSNIFDNLNDEDYKLAIKLLEESILSTDLALYFKKRSAFQNLVETKKADWTQFENRAVLRGMMMTACDVAAITKPWEIQQRVAELVASEFFEQGDIEKNEYSSDPIPMMDRNKHSELPSMQVGFIDFVCLPLYKVFYHINPLLKPLYDGVIENKKNWQ 2729
+S EKS ++ + A L A TG +NI D + + + D+ F +LC PI+N+ +++IGVAQ+LN+ D FD+ D+ +FE F IFCGLGI+NT MY++ A+Q + ++VL YHA+ + D+ A +P V +D FDD + A++RM+M+L ++ +F + +T+C ++LTV+KNYR V YHNWRHAFNV Q MF +L +++E+ ++ GCLCHDLDHRGTNN FQ KSGSA+A+LYGTS T+EHHHF+H+VMIL+SEG NIF NL+ ++Y ++LL++SIL+TDL LYF++R+ F LV + DW +R + R M+MTACD+ A+TKPWEI ++VAELV SEFFEQGD E+ E P + DRN+ ELP +Q+ +ID +C+PLY+ +N LKP+ D V N+ W+
Sbjct: 459 ESMEKSSYSDWLINNSIAELVASTGLPVNISDAYQDPRFDAEADQISGFHIRSVLCVPIWNSNHQIIGVAQVLNRLDGKPFDDADQRLFEAFVIFCGLGINNTIMYDQVKKSWAKQSVALDVLSYHATCSKAEVDKFKAANIPLVSELAIDDIHFDDFSLDVDAMITAALRMFMELGMVQKFKIDYETLCRWLLTVRKNYRMVLYHNWRHAFNVCQLMFAMLTTAGFQDILTEVEILAVIVGCLCHDLDHRGTNNAFQAKSGSALAQLYGTSATLEHHHFNHAVMILQSEGHNIFANLSSKEYSDLMQLLKQSILATDLTLYFERRTEFFELVSKGEYDWNIKNHRDIFRSMLMTACDLGAVTKPWEISRQVAELVTSEFFEQGDRERLELKLTPSAIFDRNRKDELPRLQLEWIDSICMPLYQALVKVNVKLKPMLDSVATNRSKWE 906 HSP 2 Score: 204.912 bits (520), Expect = 2.991e-54 Identity = 106/252 (42.06%), Postives = 161/252 (63.89%), Query Frame = 2
Query: 494 VGIPPIRPKRKTFE-ELSALNEKDLFMELIRDIAHELDVDALSHKILVNVSVLTKCDRSSLFLCKGHK-DRKYLISRLFDVTAD-----CTVEEAVKPIEDAIIIPFGVGIAGNAAATGEIINIEDAYKDPRFNRKVDEETGYKTHSILCMPIKNQDLEVIGVAQIINKKEGDQRFTAKDIEVFENYLTFCGIGLTNAQLFESSVQEFTRNQVLLNLARNIFEDTECLDTVVRRIMTHAQDLILCQRCTVYI 1228
V +P P ++ L NE+ F+EL++DI+++LD+ +LS+KIL+ V ++ DR SLFL +G +K L+S+ FDV A C+ E ++ +P+G GI G GE +NI DAY+D RFN ++D+ TGYKT S+LCMPI++ D E+IGVAQ INK FT D +V + YL FCGI ++NAQLF +S +E+ R++ LL + ++FE+ L+ +V++IM AQ L+ C+RC+V +
Sbjct: 180 VNLPRYPPTAIDYKCHLKKHNERQFFLELVKDISNDLDLTSLSYKILIFVCLMVDADRCSLFLVEGAAAGKKTLVSKFFDVHAGTPLLPCSSTENSNEVQ----VPWGKGIIGYVGEHGETVNIPDAYQDRRFNDEIDKLTGYKTKSLLCMPIRSSDGEIIGVAQAINKIPEGAPFTEDDEKVMQMYLPFCGIAISNAQLFAASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLL 427 HSP 3 Score: 101.293 bits (251), Expect = 1.407e-21 Identity = 64/212 (30.19%), Postives = 116/212 (54.72%), Query Frame = 2
Query: 521 RKTFEELSALNE--KDLFMELIRDIAHELDVDALSHKILVNVSVLTKCDRSSLFLCKGHKDRKYLISRLFDVT-------ADCTVEEAVK--PIEDAIIIPFGVGIAGNAAATGEIINIEDAYKDPRFNRKVDEETGYKTHSILCMPIKNQDLEVIGVAQIINKKEGDQRFTAKDIEVFENYLTFCGIGLTNAQLFESSVQEFTRNQVLLNL 1123
RK +E AL E DLF E + D++ + KI+ L KC+R S+ L + + ++ F++ A+ + +E+++ D +I IA A+TG +NI DAY+DPRF+ + D+ +G+ S+LC+PI N + ++IGVAQ++N+ +G + F D +FE ++ FCG+G+ N +++ + + + V L++
Sbjct: 380 RKEYERSRALLEVVNDLFEE-------QTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIESPVVKFTKSFELMSPKCSADAENSFKESMEKSSYSDWLI---NNSIAELVASTGLPVNISDAYQDPRFDAEADQISGFHIRSVLCVPIWNSNHQIIGVAQVLNRLDG-KPFDDADQRLFEAFVIFCGLGINNTIMYDQVKKSWAKQSVALDV 580 The following BLAST results are available for this feature:
BLAST of TCONS_00023975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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