TCONS_00023877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023877
Unique NameTCONS_00023877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023877 ID=TCONS_00023877|Name=TCONS_00023877|organism=Clytia hemisphaerica|type=transcript|length=1233bp
TGcctatctggtctgtattttcacttaatgtaaaatcgaaagagaaatcg
tgtattttttaatacgctgttcattaactcaaattaaatgactttggtgG
TTCGGTGAAATAGTGGCcgaattgccatcccatgttttgtcagacagtcc
taagttagagcagttggcgGTAGTCAGGTAACAAATTTATTgtctgcaaa
ttttttttgtttcctttaaaACTCGCAGTATGATAATACCACATAGCTGG
AAGGAACGGATAAAAGTCTCTTTAAAGATTGCTGCAAATTATGGCTTACA
TTGTAATGGAATCGAGCCAAATTTGTGCAAAAAGGCTGATCCTAATGATG
TTCATGGATATTTTATGCCTGAGGTGTTTATTTTCGACCCTATATCACTG
GACCATCCCTCTTGGTTGGAAGAAGTTACAGATGCCCACTACATTCCAAG
TTGATTAGAACTACAGATCCACAGTTATTCCCAAGTACACAAAGATATTC
TCAGGATATCATGCTTTCACAGAAAATGGCCTTCAAAAGCGAATTTTTGA
TGAGTTTATTTCAAAGTATATCAGTGGGACTCTCATTTGAAAAAGTAAGA
GAAACACTGGTTGCAAGAACATTGACAAAATTTCACGTTGCTAAAAACAA
GTACTTGTATGACTGTGGACAATCTAAAATCTCTCCTGACTCAGCAGNCA
AGTACCTGTATGACTGTGAACAATCTAAAATGTCTCCTGACTCAGCAGCA
TTGGACAATATGAGAGATCTTTGGCTAAAATTGATTTGTTTAAATCTTGG
TTTCGACAAAACGAATCCTTCTTTGTGGAAGACATGTCATCCTTGAAAAC
TTCATTATTATCAGTTGATCACACTTTTAGAgtGGCCACAAACATTGGGG
GATTCCAAACACATgggaatgaaaaaaattgggtGCAACTGTATAATTCA
CTCTTTATTGTCATGaatgaaaggaaagaaattgtATCCTGGCATTtcac
caaaaaagaaaaatttgcatTTGTCGAAGATTTGTTGACAAATCTTGGAG
AAAGATGTAGTGAAGATCTGCGTTATTTTATTTCTGACACATGTTGTAAA
TGGAAATGgaagatttttgaaatctttggaGATCAtatttgcccccgcag
gagcgcagcgacgaggaggcactcatagcttcacgcatagatattggact
ggaatctcgaaattttgttgtttgttgtcgcgc
Run BLAST on NCBI

protein sequence of TCONS_00023877-protein

>TCONS_00023877-protein ID=TCONS_00023877-protein|Name=TCONS_00023877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MSSLKTSLLSVDHTFRVATNIGGFQTHGNEKNWVQLYNSLFIVMNERKEI
VSWHFTKKEKFAFVEDLLTNLGERCSEDLRYFISDTCCKWKWKIFEIFGD
HICPRRSAATRRHS
Run BLAST on NCBI

transcript from alignment at sc0000464:41131..43439-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023877 ID=TCONS_00023877|Name=TCONS_00023877|organism=Clytia hemisphaerica|type=transcript|length=2309bp|location=Sequence derived from alignment at sc0000464:41131..43439- (Clytia hemisphaerica)
TGCCTATCTGGTCTGTATTTTCACTTAATGTAAAATCGAAAGAGAAATCG
TGTATTTTTTAATACGCTGTTCATTAACTCAAATTAAATGACTTTGGTGG
TTCGGTGAAATAGTGGCCGAATTGCCATCCCATGTTTTGTCAGACAGTCC
TAAGTTAGAGCAGTTGGCGGTAGTCAGGTAACAAATTTATTGTCTGCAAA
TTTTTTTTGTTTCCTTTAAAACTCGCAGTATGATAATACCACATAGCTGG
AAGGAACGGATAAAAGTCTCTTTAAAGATTGCTGCAAATTATGGCTTACA
TTGTAATGGAATCGAGCCAAATTTGTGCAAAAAGGCTGATCCTAATGATG
TTCATGGATATTTTATGCCTGAGGTGTTTATTTTCGACCCTATATCACTG
GACCATCCCTCTTGGTTGGAAGAAGTTACAGATGCCCACTACATTCCAAG
TTGATTAGAACTACAGATCCACAGTTATTCCCAAGTACACAAAGATATTC
TCAGGATATCATGCTTTCACAGAAAATGGCCTTCAAAAGCGAATTTTTGA
TGAGTTTATTTCAAAGTATATCAGTGGGACTCTCATTTGAAAAAGTAAGA
GAAACACTGGTTGCAAGAACATTGACAAAATTTCACGTTGCTAAAAACAA
GTACTTGTATGACTGTGGACAATCTAAAATCTCTCCTGACTCAGCAGNCA
AGTACCTGTATGACTGTGAACAATCTAAAATGTCTCCTGACTCAGCAGCA
TTGGACAATATGAGAGATCTTTGGCTAAAATTGATTTGTTTAAATCTTGG
TTTCGACAAAACGAATCCTTCTTTGTGGAAGACATGTCATCCTTGAAAAC
TTCATTATTATCAGTTGATCACACTTTTAGAGTAAGTTTTTTGGTCGAGT
TTGGGGCATTCAAAGAGTTTGAGGCATTCAAAGAGTCTGTCTATATTAAA
ATGAATTTTCTTTTTTAATGAAATTAAAAATAACTTTGAAGTTTATTGGA
AAATCTGGGAAAATTAGACAAGGTTAGATAGGTCTCAACCATTTGCTTTT
AGTTTATTTATAATTCTTGCAATGTTAGAATCTAAACGATAACAAAAGAT
AAAACATAAAATATAACTTCCGAAGAGTTCATTCTCCTCTAAAGGTGACT
TTGCTTGAAAGAATTTTTTCTTACACTTTTCTTTTGTCATGCTTTTATTG
AAAGTACACCTTTCTCAAACTGAGTTAAATATTAATATCTACAAAACACT
TTATGAATAATTTGATATTACAATTCAGATTCATTTACTTAGCATAAAAA
CCAGATCTTAAGAATTTTAATTCATTTGTTGAATAGATCGAAAGATATTT
AAATTTTCATTTTAAATCAAAGTTCTCTTATTTTTGTGCTTATGTTCTCT
CCCTCGTCTTCATGTAAACAGCACTTTCCAAGCGCTTTTTTTATTTGAAA
TTAATTAATTGAAAATAATTTCTGAATTCAAATTTTGTATTTTGAGATGA
TTCGCATTTTGATAACGCAATCAGTTTGCAAGAAAGGTGCATTGATTTGT
CATGATTTAAAACAATCGATTTGGTCAGCTCTGCGGTTTATGAAAAGTGG
GGTCACTAAGGACATTAAGAATTGTTTTGCATATAACATTACAATCAATA
CCCAGACAGACTTGATCCCTCTCACCCGTTCATTCGCTTTTTTTGCTTTT
TTGTTGACCCCCTCCACTACAAACTACTTTTTGATAAACTACTTATTACA
ACCTTTCTGTTTGACAGAAATTTCAAGCAAGTTTTCATCCTGATATTGAT
CATGAAATTTGAGACATTTTGTACAATTTTTTGCAAGTTTACGTACAGTT
TTACTATTGACTTAGAAGATTCAAGTATGTTTGTGCTAAACTGAAACTTT
TGTCAACCTCTATTTTTTAATCACTGTAGCTCTCTCACCAACTTTCTTTT
GTTTTAGGTGGCCACAAACATTGGGGGATTCCAAACACATGGGAATGAAA
AAAATTGGGTGCAACTGTATAATTCACTCTTTATTGTCATGAATGAAAGG
AAAGAAATTGTATCCTGGCATTTCACCAAAAAAGAAAAATTTGCATTTGT
CGAAGATTTGTTGACAAATCTTGGAGAAAGATGTAGTGAAGATCTGCGTT
ATTTTATTTCTGACACATGTTGTAAATGGAAATGGAAGATTTTTGAAATC
TTTGGAGATCATATTTGCCCCCGCAGGAGCGCAGCGACGAGGAGGCACTC
ATAGCTTCACGCATAGATATTGGACTGGAATCTCGAAATTTTGTTGTTTG
TTGTCGCGC

Coding sequence (CDS) from alignment at sc0000464:41131..43439-

>TCONS_00023877 ID=TCONS_00023877|Name=TCONS_00023877|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000464:41131..43439- (Clytia hemisphaerica)
GTGGCCACAAACATTGGGGGATTCCAAACACATGGGAATGAAAAAAATTG
GGTGCAACTGTATAATTCACTCTTTATTGTCATGAATGAAAGGAAAGAAA
TTGTATCCTGGCATTTCACCAAAAAAGAAAAATTTGCATTTGTCGAAGAT
TTGTTGACAAATCTTGGAGAAAGATGTAGTGAAGATCTGCGTTATTTTAT
TTCTGACACATGTTGTAAATGGAAATGGAAGATTTTTGAAATCTTTGGAG
ATCATATTTGCCCCCGCAGGAGCGCAGCGACGAGGAGGCACTCATAGATG
TCATCCTTGAAAACTTCATTATTATCAGTTGATCACACTTTTAGAGTGGC
CACAAACATTGGGGGATTCCAAACACATGGGAATGAAAAAAATTGGGTGC
AACTGTATAATTCACTCTTTATTGTCATGAATGAAAGGAAAGAAATTGTA
TCCTGGCATTTCACCAAAAAAGAAAAATTTGCATTTGTCGAAGATTTGTT
GACAAATCTTGGAGAAAGATGTAGTGAAGATCTGCGTTATTTTATTTCTG
ACACATGTTGTAAATGGAAATGGAAGATTTTTGAAATCTTTGGAGATCAT
ATTTGCCCCCGCAGGAGCGCAGCGACGAGGAGGCACTCATAGATGTCATC
CTTGAAAACTTCATTATTATCAGTTGATCACACTTTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013421XLOC_013421Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023877-proteinTCONS_00023877-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023877-exon-sc0000464-1575043694:42559..43439TCONS_00023877-exon-sc0000464-1575043694:42559..43439Clytia hemisphaericaexon
TCONS_00023877-exon-sc0000464-1575043694:41131..41482TCONS_00023877-exon-sc0000464-1575043694:41131..41482Clytia hemisphaericaexon
TCONS_00023877-exon-sc0000464-1510915933:42559..43439TCONS_00023877-exon-sc0000464-1510915933:42559..43439Clytia hemisphaericaexon
TCONS_00023877-exon-sc0000464-1510915933:41131..41482TCONS_00023877-exon-sc0000464-1510915933:41131..41482Clytia hemisphaericaexon
TCONS_00023877-exon-sc0000464-1491911889:42559..43439TCONS_00023877-exon-sc0000464-1491911889:42559..43439Clytia hemisphaericaexon
TCONS_00023877-exon-sc0000464-1491911889:41131..41482TCONS_00023877-exon-sc0000464-1491911889:41131..41482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:41131..43439 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.956342	1.25187	0.516897	0.710649	1.95596	2.22488	0.944406	1.13023	0.678835	1.07613	0.885681	0.333657	0.519277	0.914617	0.667507	1.08957	0.858139	1.35152	0.795862	0.571969	1.12837	1.00616	0.443058	0.776704	0.562489	0.845708	1.14382	1.07024	0.787637	0.600301
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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