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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023876 ID=TCONS_00023876|Name=TCONS_00023876|organism=Clytia hemisphaerica|type=transcript|length=1901bp
GTATAATTCACTCTTTATTGTCATGaatgaaaggaaagaaattgtATCCT
GGCATTtcaccaaaaaagaaaaatttgcatTTGTCGAAGATTTGTTGACA
AATCTTGGAGAAAGATGTAGTGAAGATCTGCGTTATTTCATTTCTGACAC
ATGTTGTAAATGGAAATGgaagatttttgaaatctttggaGATCATATTC
TAATTAAGTTGGATCCATTTCACGCTATTCAACGCATTATATTAACCATC
AGAAAAAAACATCCTTTTCACCAACAACTCTGTGACGATTTAAGGAAACT
TTTTCGTAAGCCTGGAGATTAAGGTGCATTCAGAAAGGAAGAAACAGCAG
ATCCTGACACAATTCTTACTCGACTTGATGATATCGTAAAGAAATGGGAA
GCAATGGAACAGCAAGATTCTGAGCAATGCTTAATCTCAAAAGAGACTCG
TGATGCTATCaccaacttaaaaaaaaacacatctcAGCAGGATGCTGTTC
AGGAATACCTCCAAATTGCTCATCTGGTACAAATGAAAATTTACACCGAT
CTTTGAACAAGTTTTTGAAAGGAAGAGTGATGGGTCCTGAGTTGGCTTAT
GCTTTATTCAcagttgtttttttcaagtggAACCAGAAACTCAAGGCTGC
TAAGTATCGCTATGAATTGGTCAGCAATGAAATATTTGGTGTGGGTGGAT
CATCAATGCAAGCCATTGAGTCTAACCTTGataattttcttggaaaatgg
tGTTCAAAGAAATCAATTGCAGTCAATCATCCAATTCTGACCCAATTGAC
AACCCTTCAGAAGATTTCTTCATTCATGAAGATATAGCCAATATTGAGGA
AATGATTTCTAAGTCGCACAAACAAAGAGAGATGTGTTTCAGAGATAAAG
TTCTTGAATATGGAAAGGTTGATAACCTATTAAATGCTGGATTTGAAAAG
GAACAATTCATTGTTTTTGAATCTGACACCAATGGTCTTTTGTCAACCAT
AGCCACAGAAATCTCAAAGCTTTGCTCTGTCAAGAAAGATTGTGGGAAGT
TTTTAGAATCCAAGGGGATGCAATGGGTAATTTTCAAGTACTTtgtaaaa
accaaatttcaaatattttcatggCTGCTGATTTTATTGAGATTGTATTC
ATTATCTTTACTTCATCTTCCATTCTCCCTGTACTCccaatttttccaaa
caaaaatGTATATGAAACAAGAAataattggatcatgatttgaTATGACC
AGCCAGGATACACCCCAATTAAGGAGAAAGGTTCAAAACAATTGGGGCCA
AAAAAACCCCGTTCTGCCTGTTCATGTGGAAGAACCTCAAAAAAGGAGAA
CTCTACAAGCTGCAATTCAGATGAAAGGAAATCCCGCTGTCCCTGTCTAG
CATACGAGTCTGGCTGTCTTGTCACTTGTAAATGTTTTAATTGTGCTAAC
CCTCTTGGAACAAGACCTATCGCAAAGTTAGAGACAAGTAACCGGCAACG
CCCAGCACCACAGTTATccaacacaagaaaaacaaCTCGTGACTTTATGT
TTGAAAAAGGTGAAAAAGCTTCAAAAGGAAAGTGGTCTTCTCTTGAAACA
CTCCTGCTATATAATTAATGTCAAAAAAAGATGGCACATCATTACTaaca
aaaatgttaaataatGAAGTAAAAGTTCTTAGAAGTGCTTGTTATGAAAT
AGATGAGAAAACTGAAGCTGAAATATCTTCAAAGATTCGATATAGCAAAT
CTGCAAGAAGAGTGGCTGACTCCTGAGCTTAAAATAGCAATTTGATTGTA
TCTATGTTTATTTAGTCTTTCCCTTTTATTCCATctcaaatttttctaat
ttgtttTCAAGGGAAATAGAGCTCCTTACATTTAgcagggaactaatttt
a Run BLAST on NCBI protein sequence of TCONS_00023876-protein >TCONS_00023876-protein ID=TCONS_00023876-protein|Name=TCONS_00023876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MVFKEINCSQSSNSDPIDNPSEDFFIHEDIANIEEMISKSHKQREMCFRD
KVLEYGKVDNLLNAGFEKEQFIVFESDTNGLLSTIATEISKLCSVKKDCG
KFLESKGMQWVIFKYFVKTKFQIFSWLLILLRLYSLSLLHLPFSLYSQFF
QTKMYMKQEIIGS Run BLAST on NCBI transcript from alignment at sc0000464:35967..38101- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023876 ID=TCONS_00023876|Name=TCONS_00023876|organism=Clytia hemisphaerica|type=transcript|length=2135bp|location=Sequence derived from alignment at sc0000464:35967..38101- (Clytia hemisphaerica)
GTATAATTCACTCTTTATTGTCATGAATGAAAGGAAAGAAATTGTATCCT
GGCATTTCACCAAAAAAGAAAAATTTGCATTTGTCGAAGATTTGTTGACA
AATCTTGGAGAAAGATGTAGTGAAGATCTGCGTTATTTCATTTCTGACAC
ATGTTGTAAATGGAAATGGAAGATTTTTGAAATCTTTGGAGATCATATTC
TAATTAAGTTGGATCCATTTCACGCTATTCAACGCATTATATTAACCATC
AGAAAAAAACATCCTTTTCACCAACAACTCTGTGACGATTTAAGGAAACT
TTTTCGTAAGCCTGGAGATTAAGGTGCATTCAGAAAGGAAGAAACAGCAG
ATCCTGACACAATTCTTACTCGACTTGATGATATCGTAAAGAAATGGGAA
GCAATGGAACAGCAAGATTCTGAGCAATGCTTAATCTCAAAAGAGACTCG
TGATGCTATCACCAACTTAAAAAAAAACACATCTCAGCAGGATGCTGTTC
AGGAATACCTCCAAATTGCTCATCTGGTACAAATGAAAATTTACACCGGT
AATGTCCAAGAATTATATTAATTGACAAGAAAGAAAACATTTTTCCACAT
AAAGGGGTGAACTCATTGGAAAGTTTATTCATTTTAAAAGTTGCTTTCCA
TCTGATTTCATAGGGCCCTTTAAAGGAGGATTCTATGCATTCAAATTTTA
TTTTTAATTTTACCTGTTAATTTTTGTGAGGATATTTTAGTATAAGTTCC
ATAAAAGGTAAGTTCTTTTCACTTCATTTTAGATCTTTGAACAAGTTTTT
GAAAGGAAGAGTGATGGGTCCTGAGTTGGCTTATGCTTTATTCACAGTTG
TTTTTTTCAAGTGGAACCAGAAACTCAAGGCTGCTAAGTATCGCTATGAA
TTGGTCAGCAATGAAATATTTGGTGTGGGTGGATCATCAATGCAAGCCAT
TGAGTCTAACCTTGATAATTTTCTTGGAAAATGGTGTTCAAAGAAATCAA
TTGCAGTCAATCATCCAATTCTGACCCAATTGACAACCCTTCAGAAGATT
TCTTCATTCATGAAGATATAGCCAATATTGAGGAAATGATTTCTAAGTCG
CACAAACAAAGAGAGATGTGTTTCAGAGATAAAGTTCTTGAATATGGAAA
GGTTGATAACCTATTAAATGCTGGATTTGAAAAGGAACAATTCATTGTTT
TTGAATCTGACACCAATGGTCTTTTGTCAACCATAGCCACAGAAATCTCA
AAGCTTTGCTCTGTCAAGAAAGATTGTGGGAAGTTTTTAGAATCCAAGGG
GATGCAATGGGTAATTTTCAAGTACTTTGTAAAAACCAAATTTCAAATAT
TTTCATGGCTGCTGATTTTATTGAGATTGTATTCATTATCTTTACTTCAT
CTTCCATTCTCCCTGTACTCCCAATTTTTCCAAACAAAAATGTATATGAA
ACAAGAAATAATTGGATCATGATTTGATATGACCAGCCAGGATACACCCC
AATTAAGGAGAAAGGTTCAAAACAATTGGGGCCAAAAAAACCCCGTTCTG
CCTGTTCATGTGGAAGAACCTCAAAAAAGGAGAACTCTACAAGCTGCAAT
TCAGATGAAAGGAAATCCCGCTGTCCCTGTCTAGCATACGAGTCTGGCTG
TCTTGTCACTTGTAAATGTTTTAATTGTGCTAACCCTCTTGGAACAAGAC
CTATCGCAAAGTTAGAGACAAGTAACCGGCAACGCCCAGCACCACAGTTA
TCCAACACAAGAAAAACAACTCGTGACTTTATGTTTGAAAAAGGTGAAAA
AGCTTCAAAAGGAAAGTGGTCTTCTCTTGAAACACTCCTGCTATATAATT
AATGTCAAAAAAAGATGGCACATCATTACTAACAAAAATGTTAAATAATG
AAGTAAAAGTTCTTAGAAGTGCTTGTTATGAAATAGATGAGAAAACTGAA
GCTGAAATATCTTCAAAGATTCGATATAGCAAATCTGCAAGAAGAGTGGC
TGACTCCTGAGCTTAAAATAGCAATTTGATTGTATCTATGTTTATTTAGT
CTTTCCCTTTTATTCCATCTCAAATTTTTCTAATTTGTTTTCAAGGGAAA
TAGAGCTCCTTACATTTAGCAGGGAACTAATTTTA Coding sequence (CDS) from alignment at sc0000464:35967..38101- >TCONS_00023876 ID=TCONS_00023876|Name=TCONS_00023876|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000464:35967..38101- (Clytia hemisphaerica)
ATGGTGTTCAAAGAAATCAATTGCAGTCAATCATCCAATTCTGACCCAAT
TGACAACCCTTCAGAAGATTTCTTCATTCATGAAGATATAGCCAATATTG
AGGAAATGATTTCTAAGTCGCACAAACAAAGAGAGATGTGTTTCAGAGAT
AAAGTTCTTGAATATGGAAAGGTTGATAACCTATTAAATGCTGGATTTGA
AAAGGAACAATTCATTGTTTTTGAATCTGACACCAATGGTCTTTTGTCAA
CCATAGCCACAGAAATCTCAAAGCTTTGCTCTGTCAAGAAAGATTGTGGG
AAGTTTTTAGAATCCAAGGGGATGCAATGGGTAATTTTCAAGTACTTTGT
AAAAACCAAATTTCAAATATTTTCATGGCTGCTGATTTTATTGAGATTGT
ATTCATTATCTTTACTTCATCTTCCATTCTCCCTGTACTCCCAATTTTTC
CAAACAAAAATGTATATGAAACAAGAAATAATTGGATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023876-exon-sc0000464-1575043694:37554..38101 | TCONS_00023876-exon-sc0000464-1575043694:37554..38101 | Clytia hemisphaerica | exon |
| TCONS_00023876-exon-sc0000464-1575043694:35967..37319 | TCONS_00023876-exon-sc0000464-1575043694:35967..37319 | Clytia hemisphaerica | exon |
| TCONS_00023876-exon-sc0000464-1510915933:37554..38101 | TCONS_00023876-exon-sc0000464-1510915933:37554..38101 | Clytia hemisphaerica | exon |
| TCONS_00023876-exon-sc0000464-1510915933:35967..37319 | TCONS_00023876-exon-sc0000464-1510915933:35967..37319 | Clytia hemisphaerica | exon |
| TCONS_00023876-exon-sc0000464-1491911889:37554..38101 | TCONS_00023876-exon-sc0000464-1491911889:37554..38101 | Clytia hemisphaerica | exon |
| TCONS_00023876-exon-sc0000464-1491911889:35967..37319 | TCONS_00023876-exon-sc0000464-1491911889:35967..37319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:35967..38101 - |
Blast
The following BLAST results are available for this feature:
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