TCONS_00023865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023865
Unique NameTCONS_00023865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023865 ID=TCONS_00023865|Name=TCONS_00023865|organism=Clytia hemisphaerica|type=transcript|length=383bp
NGTACAACGATACGTTATCTGTGAACCTGCGTTCTCGGCAGATTCAAAAG
ATTTCAGAATGTTTGATCGATAAGCTGTATGATCAATCAAAGGAGTGGAA
TTTTGGATAGTTGGGGATTCCACAATCGAGAGTTCGCGGATACAGGCGAG
TTCCGTATAGAAAGTTGCTGACAGATGAGCATCGAAAGTACGGGAAAATG
ATTCATGTGGACCGCCAAGGATACCGGTGGTTCCATCAGAACTTCTGAAA
ACTGATTTGAATATGGATAAACCCGTTGGTGATTGGAATATAAGTTTTGG
GAAATAGCGAAAGTAGGAAATGCCGATCATCATATCGACTTTGCCACCGG
cagattttggtaattttgggaatattttcgCNN
Run BLAST on NCBI

protein sequence of TCONS_00023865-protein

>TCONS_00023865-protein ID=TCONS_00023865-protein|Name=TCONS_00023865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
AKIFPKLPKSAGGKVDMMIGISYFRYFPKLIFQSPTGLSIFKSVFRSSDG
TTGILGGPHESFSRTFDAHLSATFYTELACIRELSIVESPTIQNSTPLID
HTAYRSNILKSFESAENAGSQITYRCX
Run BLAST on NCBI

transcript from alignment at sc0000463:253538..253920

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023865 ID=TCONS_00023865|Name=TCONS_00023865|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at sc0000463:253538..253920 (Clytia hemisphaerica)
NNGcgaaaatattcccaaaattaccaaaatctgCCGGTGGCAAAGTCGAT
ATGATGATCGGCATTTCCTACTTTCGCTATTTCCCAAAACTTATATTCCA
ATCACCAACGGGTTTATCCATATTCAAATCAGTTTTCAGAAGTTCTGATG
GAACCACCGGTATCCTTGGCGGTCCACATGAATCATTTTCCCGTACTTTC
GATGCTCATCTGTCAGCAACTTTCTATACGGAACTCGCCTGTATCCGCGA
ACTCTCGATTGTGGAATCCCCAACTATCCAAAATTCCACTCCTTTGATTG
ATCATACAGCTTATCGATCAAACATTCTGAAATCTTTTGAATCTGCCGAG
AACGCAGGTTCACAGATAACGTATCGTTGTACN

Coding sequence (CDS) from alignment at sc0000463:253538..253920

>TCONS_00023865 ID=TCONS_00023865|Name=TCONS_00023865|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000463:253538..253920 (Clytia hemisphaerica)
GcgaaaatattcccaaaattaccaaaatctgCCGGTGGCAAAGTCGATAT
GATGATCGGCATTTCCTACTTTCGCTATTTCCCAAAACTTATATTCCAAT
CACCAACGGGTTTATCCATATTCAAATCAGTTTTCAGAAGTTCTGATGGA
ACCACCGGTATCCTTGGCGGTCCACATGAATCATTTTCCCGTACTTTCGA
TGCTCATCTGTCAGCAACTTTCTATACGGAACTCGCCTGTATCCGCGAAC
TCTCGATTGTGGAATCCCCAACTATCCAAAATTCCACTCCTTTGATTGAT
CATACAGCTTATCGATCAAACATTCTGAAATCTTTTGAATCTGCCGAGAA
CGCAGGTTCACAGATAACGTATCGTTGTACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013412XLOC_013412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023865-exon-sc0000463-1491911889:253538..253920TCONS_00023865-exon-sc0000463-1491911889:253538..253920Clytia hemisphaericaexon
TCONS_00023865-exon-sc0000463-1510915933:253538..253920TCONS_00023865-exon-sc0000463-1510915933:253538..253920Clytia hemisphaericaexon
TCONS_00023865-exon-sc0000463-1575043694:253538..253920TCONS_00023865-exon-sc0000463-1575043694:253538..253920Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023865-proteinTCONS_00023865-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000463supercontigsc0000463:253538..253920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.65064	4.37426	2.77033	2.03275	3.57453	2.82464	4.71851	3.92659	3.60819	4.46932	1.44601	4.88855	4.47494	7.18214	1.50512	3.35469	1.83676	1.88262	0.216745	1.13404	2.56279	2.01929	0.701346	1.48779	30.8667	22.6635	0.279581	0	0.452615	2.53629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top