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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023835 ID=TCONS_00023835|Name=TCONS_00023835|organism=Clytia hemisphaerica|type=transcript|length=1071bp
TTTACATAAAGGTTCTGTTGGTCGGAACGGAGGTCAATACCTAAAAGGGA
GACTTTACAAAGCTTTCATTCATGCCAACTAGAGCAGAGAAGCTTTCATC
AACTAACAGTAGGATTGcatcactgaaaattgaaaaaagacaaTTTCTGA
CAATACCAAACATTCTCTACTATCTTTGGTTATAGAAAAGAACTACAATT
CAACATCTTGATAGACAAAAACAAGAATCTATCTTGTAACAAGATGAAGT
TattgtttttaatgattctgTTTGTCAGTCAAATGCAGGCCAAGATGCTG
TCATCTCGAATCTTCATGCAGTTCCGAGAGAACGTTATTATAGACAAAAA
AACTATCACAACTAAAGAAGACTACAGCATTACTGAATGCTGTTTAGAAT
GTCAACGAACACCGAATTGCACATTTGCTCAAACAGTGACAGATCCAAGT
GGAGTCAAAACGACGTGTTCCCTTTTCGGTGAAATAGCAGATGTTTGTTC
ATACTTGGAGCCTCACGAAGGTGGAATGGTGTTTAAAGCGGAGTCACAAG
AGGGCGGTGATTTGCAACCAACTCCTTCATTAAAAACGCACACATGGCCA
ACCGAGAACTCGGCAAACCCGGGCACTCCTCATTAGAAGTgataatttta
ttgtttaaaaggTTTTTGCCGggtatttataaaaactagacaTGCAGATG
CTGACGTAAGcagaattgaaattaaaaaaagaaatactcttgttcaactt
ttttctcCATAGACTATTAATTCAGAATACTTtgcattatatataaaaat
cgaacaaaataaATCTATATTTGATGGGGCAAGTGAATATTCAGCATTGT
TTCGGCAAGATTAGCAAACAGCCCTGTATAAACTGGGTTTAAAAACTATA
TAGTAGTGTaatgatattttttcttttttcccatCAAAATTGTACACAAT
ACACACAATTTTTTTATGTCAAAGCGTTCAAAATTAATCGCCTGTCATGT
GTAATTTTAGAAAGaagatattattattatttttattttttattattgtc
GAATAGAACATTCAACTGATG Run BLAST on NCBI protein sequence of TCONS_00023835-protein >TCONS_00023835-protein ID=TCONS_00023835-protein|Name=TCONS_00023835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MKLLFLMILFVSQMQAKMLSSRIFMQFRENVIIDKKTITTKEDYSITECC
LECQRTPNCTFAQTVTDPSGVKTTCSLFGEIADVCSYLEPHEGGMVFKAE
SQEGGDLQPTPSLKTHTWPTENSANPGTPH Run BLAST on NCBI transcript from alignment at sc0000462:191666..192736 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023835 ID=TCONS_00023835|Name=TCONS_00023835|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000462:191666..192736 (Clytia hemisphaerica)
CATCAGTTGAATGTTCTATTCgacaataataaaaaataaaaataataata
atatcttCTTTCTAAAATTACACATGACAGGCGATTAATTTTGAACGCTT
TGACATAAAAAAATTGTGTGTATTGTGTACAATTTTGatgggaaaaaaga
aaaaatatcattACACTACTATATAGTTTTTAAACCCAGTTTATACAGGG
CTGTTTGCTAATCTTGCCGAAACAATGCTGAATATTCACTTGCCCCATCA
AATATAGATttattttgttcgatttttatatataatgcaAAGTATTCTGA
ATTAATAGTCTATGgagaaaaaagttgaacaagagtatttctttttttaa
tttcaattctgCTTACGTCAGCATCTGCAtgtctagtttttataaatacc
CGGCAAAAAccttttaaacaataaaattatcACTTCTAATGAGGAGTGCC
CGGGTTTGCCGAGTTCTCGGTTGGCCATGTGTGCGTTTTTAATGAAGGAG
TTGGTTGCAAATCACCGCCCTCTTGTGACTCCGCTTTAAACACCATTCCA
CCTTCGTGAGGCTCCAAGTATGAACAAACATCTGCTATTTCACCGAAAAG
GGAACACGTCGTTTTGACTCCACTTGGATCTGTCACTGTTTGAGCAAATG
TGCAATTCGGTGTTCGTTGACATTCTAAACAGCATTCAGTAATGCTGTAG
TCTTCTTTAGTTGTGATAGTTTTTTTGTCTATAATAACGTTCTCTCGGAA
CTGCATGAAGATTCGAGATGACAGCATCTTGGCCTGCATTTGACTGACAA
AcagaatcattaaaaacaatAACTTCATCTTGTTACAAGATAGATTCTTG
TTTTTGTCTATCAAGATGTTGAATTGTAGTTCTTTTCTATAACCAAAGAT
AGTAGAGAATGTTTGGTATTGTCAGAAAttgtcttttttcaattttcagt
gatgCAATCCTACTGTTAGTTGATGAAAGCTTCTCTGCTCTAGTTGGCAT
GAATGAAAGCTTTGTAAAGTCTCCCTTTTAGGTATTGACCTCCGTTCCGA
CCAACAGAACCTTTATGTAAA Coding sequence (CDS) from alignment at sc0000462:191666..192736 >TCONS_00023835 ID=TCONS_00023835|Name=TCONS_00023835|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000462:191666..192736 (Clytia hemisphaerica)
CTAATGAGGAGTGCCCGGGTTTGCCGAGTTCTCGGTTGGCCATGTGTGCG
TTTTTAATGAAGGAGTTGGTTGCAAATCACCGCCCTCTTGTGACTCCGCT
TTAAACACCATTCCACCTTCGTGAGGCTCCAAGTATGAACAAACATCTGC
TATTTCACCGAAAAGGGAACACGTCGTTTTGACTCCACTTGGATCTGTCA
CTGTTTGAGCAAATGTGCAATTCGGTGTTCGTTGACATTCTAAACAGCAT
TCAGTAATGCTGTAGTCTTCTTTAGTTGTGATAGTTTTTTTGTCTATAAT
AACGTTCTCTCGGAACTGCATGAAGATTCGAGATGACAGCATCTTGGCCT
GCATTTGACTGACAAAcagaatcattaaaaacaatAACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023835-exon-sc0000462-1491911889:191666..192736 | TCONS_00023835-exon-sc0000462-1491911889:191666..192736 | Clytia hemisphaerica | exon |
| TCONS_00023835-exon-sc0000462-1510915933:191666..192736 | TCONS_00023835-exon-sc0000462-1510915933:191666..192736 | Clytia hemisphaerica | exon |
| TCONS_00023835-exon-sc0000462-1575043694:191666..192736 | TCONS_00023835-exon-sc0000462-1575043694:191666..192736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000462 | supercontig | sc0000462:191666..192736 . |
Blast
The following BLAST results are available for this feature:
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