TCONS_00023828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023828
Unique NameTCONS_00023828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023828 ID=TCONS_00023828|Name=TCONS_00023828|organism=Clytia hemisphaerica|type=transcript|length=987bp
NNTTCTTTGATACATGAAAAAGACAATCTTTTATAtacattgaaagtttg
aaaaacaaacaaaggaaagattatttaaattttaaaaacgatGTGTTTTT
GTCTATATACAACGATAAATATGAATAAAAATGGTAGGGTGTTGCCAAAT
TATAAACACCATGGTGATTTAATTTGCTGACAGGAAACTCACTGGAAAAT
AAAAGTTTGGCCGTTCCACAAtaataaaggaaaagataaattccaaacat
agaaaaatacaattttaaaatgaCAGCATAAAATTAGGAgacttaatatt
tttttcgaattttgggtTCGGCCGAGCTCCAAGCGCACAAAATTGATACT
TGGGGCAAAAGGGAAGGGAGGGTATTATTTTGCATCAATAATTCAATGAC
TGGCAATTACAAAAACAATcctgaaaattaaaataagCACAAATACAATA
AAACatTCCAGAGACGTTAAGTTGCCCCCCCCGCCCAGCGgcaactctga
tcacgatatcacaaaattttttgtcttcaatacGATCACGAAAACCATGG
CTtatcacgcatccctttgaaaaagtcaaaatcacgtatcacggctcaaa
aaattttaaatcacgACCGTTCACGTTTTCACCGTTCCCTTAATTTACTT
GTTTAGCAATGTCTTAGAACATTTTAGGAATACCTTAAAGTTTGTGAACG
TTCCTGAACGTTGCAAAACATTCCCAAACGTTCTAGTCGACCTTTATTCA
CAAAAGATCGTTTCCAGAACGCAAGGGGAAGGTCTCgttatttcatttca
tttgtatTTAACCGCTTGTGATATGACACCTATCTTTCTGGACACACTGT
TATGTAGGTACTcgttttaaagggacataaaagtagtaaaatgtaaacat
ttcgCGAGCCACGTGTccaaaatcacgtgtccaaaacaaacttgtaaaac
aaatGAGACAAtaaaaatcagccatatttgcttttat
Run BLAST on NCBI

transcript from alignment at sc0000462:202746..204635-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023828 ID=TCONS_00023828|Name=TCONS_00023828|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at sc0000462:202746..204635- (Clytia hemisphaerica)
NNTTCTTTGATACATGAAAAAGACAATCTTTTATATACATTGAAAGTTTG
AAAAACAAACAAAGGAAAGATTATTTAAATTTTAAAAACGATGTGTTTTT
GTCTATATACAACGATAAATATGAATAAAAATGGTAGGGTGTTGCCAAAT
TATAAACACCATGGTGATTTAATTTGCTGACAGGAAACTCACTGGAAAAT
AAAAGTTTGGCCGTTCCACAATAATAAAGGAAAAGATAAATTCCAAACAT
AGAAAAATACAATTTTAAAATGACAGCATAAAATTAGGAGACTTAATATT
TTTTTCGAATTTTGGGTTCGGCCGAGCTCCAAGCGCACAAAATTGATACT
TGGGGCAAAAGGGAAGGGAGGGTATTATTTTGCATCAATAATTCAATGAC
TGGCAATTACAAAAACAATCCTGAAAATTAAAATAAGCACAAATACAATA
AAACATTCCAGAGACGTTAAGTTGCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTGATACATGAAAAAG
ACAATCTTTTATATACATTGAAAGTTTGAAAAACAAACAAAGGAAAGATT
ATTTAAATTTTAAAAACGATGTGTTTTTGTCTATATACAACGATAAATAT
GAATAAAAATGGTAGGGTGTTGCCAAATTATAAACACCATGGTGATTTAA
TTTGCTGACAGGAAACTCACTGGAAAATAAAAGTTTGGCCGTTCCACAAT
AATAAAGGAAAAGATAAATTCCAAACATAGAAAAATACAATTTTAAAATG
ACAACATAAAATTAGGAGACTTAATATTTTTTTCGAATTTTGGGTTCGGC
CGAGCTCCAAGCGCACAAAATTGATACTTGGGGCAAACGGGAAGGGAGGG
TATTCTTTTGCATCAATAATTCAATGACTGGCAATTACAAAAACAATCCT
GAGAATTAAAATAATCAAGAATATGTTGTATGACTATAAGTACAAATAAA
ATGGAACATTCCAGAGACGTTAAGTTGCCCCCCCCGCCCAGCGGCAACTC
TGATCACGATATCACAAAATTTTTTGTCTTCAATACGATCACGAAAACCA
TGGCTTATCACGCATCCCTTTGAAAAAGTCAAAATCACGTATCACGGCTC
AAAAAATTTTAAATCACGACCGTTCACGTTTTCACCGTTCCCTTAATTTA
CTTGTTTAGCAATGTCTTAGAACATTTTAGGAATACCTTAAAGTTTGTGA
ACGTTCCTGAACGTTGCAAAACATTCCCAAACGTTCTAGTCGACCTTTAT
TCACAAAAGATCGTTTCCAGAACGCAAGGGGAAGGTCTCGTTATTTCATT
TCATTTGTATTTAACCGCTTGTGATATGACACCTATCTTTCTGGACACAC
TGTTATGTAGGTACTCGTTTTAAAGGGACATAAAAGTAGTAAAATGTAAA
CATTTCGCGAGCCACGTGTCCAAAATCACGTGTCCAAAACAAACTTGTAA
AACAAATGAGACAATAAAAATCAGCCATATTTGCTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013385XLOC_013385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023828-exon-sc0000462-1575043694:204182..204635TCONS_00023828-exon-sc0000462-1575043694:204182..204635Clytia hemisphaericaexon
TCONS_00023828-exon-sc0000462-1575043694:202746..203278TCONS_00023828-exon-sc0000462-1575043694:202746..203278Clytia hemisphaericaexon
TCONS_00023828-exon-sc0000462-1510915933:204182..204635TCONS_00023828-exon-sc0000462-1510915933:204182..204635Clytia hemisphaericaexon
TCONS_00023828-exon-sc0000462-1510915933:202746..203278TCONS_00023828-exon-sc0000462-1510915933:202746..203278Clytia hemisphaericaexon
TCONS_00023828-exon-sc0000462-1491911889:204182..204635TCONS_00023828-exon-sc0000462-1491911889:204182..204635Clytia hemisphaericaexon
TCONS_00023828-exon-sc0000462-1491911889:202746..203278TCONS_00023828-exon-sc0000462-1491911889:202746..203278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000462supercontigsc0000462:202746..204635 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.522624	0.336727	0.193518	0.268381	3.51915	3.22921	1.84818	1.33575	0.498959	0.437102	1.33532	0.284285	0.0741618	0.7691	0.355321	0.291999	0.724022	0.614977	0.654126	0.340642	0.841961	1.10903	0.775	0.675363	0.988076	0.90536	0.377986	0.32246	0.206793	0.189976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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