TCONS_00023821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023821
Unique NameTCONS_00023821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023821 ID=TCONS_00023821|Name=TCONS_00023821|organism=Clytia hemisphaerica|type=transcript|length=1159bp
AGCAATTGCAGACTTTCATACAAGATCAGGGAATGACCAGTGAAACTGTC
CATCAAATAAATGCTGCTGATTTCACCAAATGGCTTATGAATGTTAAAAT
CACTTATCTCGTTGCTAACGAGTTATCTGTCAATAGCCTGAGTCTACCCC
CATCTATGTCAGAACATGATGTTTTTCTGAAAGGTTGCATTGCAGAGCTG
AGATCTAAATCGACAGCATCACAACTACAGACGACTCTCCAAAGTTGTCT
TCTGAAGTTTCCAAGCAATGGTGGTAAAAAGAATCTAAAACGTGAGGTTG
AAAAACTGGTCGAGCAAAACCAACCACAAGATTCGAACTTGTTATGGTTC
TTCGAATTGCAACTATCAGAACGTGGTGAAGAAATAGAGCACACAATATT
TGATCGATTTTTGTCAATGAAAGAAGATTCCGTTCTCAATGATACAGTCA
TTCTTCaatctgtttgtttcttgactgatgtcaaaaagaagaaacaccAA
GAATTTGATCTTGTCATTTTCTCTTGGTCAAGAAAACTAGTTATCGGGAT
TGAGATGAAGAGACAACTCACTGATACTGCTTTTGAACAAACTGAGAAAT
ACCATCGACTATTCGAAGAAAGACTTGGGGATCAGTTTGGTGATGACTGG
ACGTTTGTGCCAGTCATCTGTGTTGGGAAAAACACCGAGACGTTCGAAAG
CTTACATTACATCAGCATTAACATTGACATCAAAATGTGGTTGTCAGCCA
TATTCAACAAATTTCCTGAGAAAACCTATCAAATACCCTTCCTACCACCC
ATTGAGCAATTGAAAAACGTCTTGAGACTCATTGTTTTCTCGATCCACAT
CTCAAAGAAAGATCAAATAGCACCCATCACAACTAACAGCTGGGTGAAAT
ACATCAGCGATGCCATCGACTCAGTCTGCACCAGCCATAACATTTTGTTC
CACTCCAAGGAACAATTACCAGCACTGACAGCAGACGAtccaaagtacaa
aaaagtcgTTCTAAAAGGTGGTTATGGCACAGGTAAAAGCTTTTTGCTCC
AGCAGAAAGCAATTATGCTGAGCAAAGATCCGTATTTCAGTGGTTATGTG
ATGTACATATGTGGAAAGATTTCGTATGACTTCCGATCGACTCTATTATA
CTGGCGAAC
Run BLAST on NCBI

transcript from alignment at sc0000462:127667..129305-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023821 ID=TCONS_00023821|Name=TCONS_00023821|organism=Clytia hemisphaerica|type=transcript|length=1639bp|location=Sequence derived from alignment at sc0000462:127667..129305- (Clytia hemisphaerica)
AGCAATTGCAGACTTTCATACAAGATCAGGGAATGACCAGTGAAACTGTC
CATCAAATAAATGCTGCTGATTTCACCAAATGGCTTATGAATGTTAAAAT
CACTTATCTCGTTGCTAACGAGTTATCTGTCAATAGCCTGAGTCTACCCC
CATCTATGTCAGAACATGATGTTTTTCTGAAAGGTTGCATTGCAGAGCTG
AGATCTAAATCGACAGGTAAGAATTTCTTCTGGTTATGCTGTGTCTTCCT
GTTAGTGATGAATGAATTAGAAAGCTTCAGCGTGTCCCCCCCCCAAAAAA
AAAAGCGGACAAATTTTTATGTAAATAAGTAAAATACTCAAAACTCATTA
TCTAAACTGGGCAAAAAATAATTAAAATAAGATGATTCCAATTCTCTGTT
CAATGAATAAATATTCAATTCCTAGATGATTGAAAAGGTTATTGAGATTG
TTGAAGTCATAAAATTCGGCAAACATTATTGCATAAAAATGTATTCGCTT
TTTTTGGGACTCACTGTATTTGATGCTTTATTACAGCCACTTTTTCCAGT
TTGGAAATAGAAATCTATTGACATTGTATTGATTTTTCCTTGAATGAGAA
ATCTGTCTGATAACTTTAATTTTAAAGAGCTTTGAAGATGTGATTTAGGT
TTCAAAATATTGATATTCACATAAACATTATTTTGATTTATCATAGCATC
ACAACTACAGACGACTCTCCAAAGTTGTCTTCTGAAGTTTCCAAGCAATG
GTGGTAAAAAGAATCTAAAACGTGAGGTTGAAAAACTGGTCGAGCAAAAC
CAACCACAAGATTCGAACTTGTTATGGTTCTTCGAATTGCAACTATCAGA
ACGTGGTGAAGAAATAGAGCACACAATATTTGATCGATTTTTGTCAATGA
AAGAAGATTCCGTTCTCAATGATACAGTCATTCTTCAATCTGTTTGTTTC
TTGACTGATGTCAAAAAGAAGAAACACCAAGAATTTGATCTTGTCATTTT
CTCTTGGTCAAGAAAACTAGTTATCGGGATTGAGATGAAGAGACAACTCA
CTGATACTGCTTTTGAACAAACTGAGAAATACCATCGACTATTCGAAGAA
AGACTTGGGGATCAGTTTGGTGATGACTGGACGTTTGTGCCAGTCATCTG
TGTTGGGAAAAACACCGAGACGTTCGAAAGCTTACATTACATCAGCATTA
ACATTGACATCAAAATGTGGTTGTCAGCCATATTCAACAAATTTCCTGAG
AAAACCTATCAAATACCCTTCCTACCACCCATTGAGCAATTGAAAAACGT
CTTGAGACTCATTGTTTTCTCGATCCACATCTCAAAGAAAGATCAAATAG
CACCCATCACAACTAACAGCTGGGTGAAATACATCAGCGATGCCATCGAC
TCAGTCTGCACCAGCCATAACATTTTGTTCCACTCCAAGGAACAATTACC
AGCACTGACAGCAGACGATCCAAAGTACAAAAAAGTCGTTCTAAAAGGTG
GTTATGGCACAGGTAAAAGCTTTTTGCTCCAGCAGAAAGCAATTATGCTG
AGCAAAGATCCGTATTTCAGTGGTTATGTGATGTACATATGTGGAAAGAT
TTCGTATGACTTCCGATCGACTCTATTATACTGGCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013381XLOC_013381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023821-exon-sc0000462-1575043694:129090..129305TCONS_00023821-exon-sc0000462-1575043694:129090..129305Clytia hemisphaericaexon
TCONS_00023821-exon-sc0000462-1575043694:127667..128609TCONS_00023821-exon-sc0000462-1575043694:127667..128609Clytia hemisphaericaexon
TCONS_00023821-exon-sc0000462-1510915933:129090..129305TCONS_00023821-exon-sc0000462-1510915933:129090..129305Clytia hemisphaericaexon
TCONS_00023821-exon-sc0000462-1510915933:127667..128609TCONS_00023821-exon-sc0000462-1510915933:127667..128609Clytia hemisphaericaexon
TCONS_00023821-exon-sc0000462-1491911889:129090..129305TCONS_00023821-exon-sc0000462-1491911889:129090..129305Clytia hemisphaericaexon
TCONS_00023821-exon-sc0000462-1491911889:127667..128609TCONS_00023821-exon-sc0000462-1491911889:127667..128609Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000462supercontigsc0000462:127667..129305 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.169136	0.0832606	0.540956	0.182247	1.29952	1.27175	0.1836	0.293618	0.203642	0.376134	2.64414	1.23942	0.820991	1.36967	0.421717	0.397326	1.51107	1.10894	0.146197	0.213125	0.171276	0	0.0810102	0.107353	0.0512074	0.0546499	0.391153	0.476933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top