TCONS_00023778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023778
Unique NameTCONS_00023778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023778 ID=TCONS_00023778|Name=TCONS_00023778|organism=Clytia hemisphaerica|type=transcript|length=233bp
TGCCTTTTAATTACCTTAAATTTCCATTTGATGAGATAGGGATATGAAGG
CCAAGTAGAAATAAAGAGCATTGAGAAATGGGAACTTTCATCGGGTAAAA
TTTTGACAGGCTCGGAGATGCTTCGGTCGAGGGCTTGAAAAGGCTGAAAG
ATGCTTATAACGATACTAACGGTGTATTTTACCTTTTTCATAGTCCTCCT
GGTAGATTTCAAAACTTcaccgagacaggggtg
Run BLAST on NCBI

transcript from alignment at sc0000461:73355..73587

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023778 ID=TCONS_00023778|Name=TCONS_00023778|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at sc0000461:73355..73587 (Clytia hemisphaerica)
cacccctgtctcggtgAAGTTTTGAAATCTACCAGGAGGACTATGAAAAA
GGTAAAATACACCGTTAGTATCGTTATAAGCATCTTTCAGCCTTTTCAAG
CCCTCGACCGAAGCATCTCCGAGCCTGTCAAAATTTTACCCGATGAAAGT
TCCCATTTCTCAATGCTCTTTATTTCTACTTGGCCTTCATATCCCTATCT
CATCAAATGGAAATTTAAGGTAATTAAAAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013363XLOC_013363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023778-exon-sc0000461-1491911889:73355..73587TCONS_00023778-exon-sc0000461-1491911889:73355..73587Clytia hemisphaericaexon
TCONS_00023778-exon-sc0000461-1510915933:73355..73587TCONS_00023778-exon-sc0000461-1510915933:73355..73587Clytia hemisphaericaexon
TCONS_00023778-exon-sc0000461-1575043694:73355..73587TCONS_00023778-exon-sc0000461-1575043694:73355..73587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000461supercontigsc0000461:73355..73587 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00667	1.96332	1.1398	1.11512	10.8604	3.21826	3.8827	2.42329	2.5449	5.25379	7.13924	8.71567	8.03405	6.25758	2.8581	0.613436	2.26711	6.97114	0	3.35939	1.94661	0	0	3.14808	5.40408	5.78762	15.1838	25.0434	0	1.13838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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