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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023768 ID=TCONS_00023768|Name=TCONS_00023768|organism=Clytia hemisphaerica|type=transcript|length=2346bpRun BLAST on NCBI protein sequence of TCONS_00023768-protein >TCONS_00023768-protein ID=TCONS_00023768-protein|Name=TCONS_00023768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp MHPQLELSLALQTVTLFSQNQRTELCLKALEILDRKYQQVHENIQVQLKRRun BLAST on NCBI transcript from alignment at sc0000461:206197..228932- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023768 ID=TCONS_00023768|Name=TCONS_00023768|organism=Clytia hemisphaerica|type=transcript|length=22736bp|location=Sequence derived from alignment at sc0000461:206197..228932- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000461:206197..228932- >TCONS_00023768 ID=TCONS_00023768|Name=TCONS_00023768|organism=Clytia hemisphaerica|type=CDS|length=35520bp|location=Sequence derived from alignment at sc0000461:206197..228932- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023768 vs. Swiss-Prot (Human)
Match: TEX11 (Testis-expressed protein 11 OS=Homo sapiens GN=TEX11 PE=1 SV=3) HSP 1 Score: 242.662 bits (618), Expect = 1.211e-67 Identity = 184/611 (30.11%), Postives = 318/611 (52.05%), Query Frame = 2
Query: 104 MHPQLELSLALQTVTLFSQNQRTELCLKALEILDRKYQQVHENIQVQXXXXXXXXXXXXXXEAKDVIRGELIRANNHGKIFNKSSLKQLHLLLWEQANIAFENKEYDNCLYWYDCSLQFMNHCTDD-KLNISKLQRNRALCFMEQKQYEKALEITLEADEKDKSSPQTLFLLYKLYVLMNDNDKAIEAIKRLSHI-----SDHNQKETVHG----LICLAAQLSFQRGNRDVAGSILEILVNSYPTENIGNKELLVPLRCLARL---KFAFLTK-ESEKEQLDLILDIMRKAKRILDDP--EQSQNAEQEA-EILWFNKLAWNLALSSSNHLDVMEASFAMCYQFSQLLPTSQQSESQQKTCLLMSTGCHLQLSRKPSG--DEKDILAQVLSQVSQC---YELMKTSPEDSSRSLMENFLILYEFEAKLRLGHTDFDDVFEKVLQVKREKKDIFDKLTNIALQGYNRNKEISLKTLKLTIKCHLETDTPDTEALSKCVHHLINLSLQKGNLTNAE--SKEDAFDYYQDTLSMLENLQSAFPEMEIVWLMTKAWNCGVHLYSSQHLDAAEKWCSMAIKFLKYLKDLKETYEPHMSSVFADIISKIQQSRAQV 1864
+H + L L L ++R + L I+ +++ +V + ++LL ++ AK+ I E+ A+ G+ S+ LH +LW QA +FE + Y + L WY SL+F + TD+ L+ +KLQRN A C++ +Q +KA E EA+ D + T F ++K+ V+ ++++A++AI L +I S+ N G L+ LAAQ + + G + VA LE L + +++L ++CL R K A + + E +K+++D +L + +A L P E++ + E A E WF K AWNLA+ +M F + Y+ SQ P+ Q +KTCLLM+ L+ RK S ++ L++ L ++ C + +K + S+ S E L+LYEFE + +L + E V ++ + F+ + IA++ I+LK LK + + + + D SKC+H+L+NLS+ G +N E E+ + Y++D LS + + +PEMEI+WLM K+WN GV ++S +AEKWC +A++FL +L KE+YE M+ +++ ++ + ++ V
Sbjct: 329 LHLDMPLDFCLNIAKLLMDHERESVGFHFLTIIHERFKSSENIGKVLILHTDMLLQRKEELLAKEKIE-EIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLRF--YSTDEMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGNSERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQIVAEKALEYLAQHSEDQ----EQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLSQPFGEEALSLESRANEAQWFRKTAWNLAVQCDKDPVMMREFFILSYKMSQFCPSDQVILIARKTCLLMAVAVDLEQGRKASTAFEQTMFLSRALEEIQTCNDIHNFLKQTGTFSNDSC-EKLLLLYEFEVRAKLNDPLLESFLESVWELPHLETKTFETIAIIAMEKPAHYPLIALKALKKALLLYKKEEPIDISQYSKCMHNLVNLSVPDGA-SNVELCPLEEVWGYFEDALSHISRTKD-YPEMEILWLMVKSWNTGVLMFSRSKYASAEKWCGLALRFLNHLTSFKESYETQMNMLYSQLVEALSNNKGPV 929 The following BLAST results are available for this feature:
BLAST of TCONS_00023768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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