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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023753 ID=TCONS_00023753|Name=TCONS_00023753|organism=Clytia hemisphaerica|type=transcript|length=1051bp
CTCTGCATAAAAAAAATGCAATCTCGATAACCGTGAAAACCTAAATAAAA
GCAATCATGTCGAAACGTCAGAAGAAATAAAGCGCGCGAAGCTACAAAAA
TAGAACTTTTTGGCGCGAAAAGAAGAactgacgtcacttttaaaaaGAAG
ACATGGTATTGCAAGATTGCAGTCGCAAACGGCTGCATAGAAAAAGTACC
AGAAACACGAGGAAAGCAGCATGGTCAAGTCAGAATCTCTATGCTTACCT
TTTTGTGGAAAGAATCTATCGTTGGCTAACCCAAATGAAGAGCCAGGTTA
TGATGCATTTGAGAAGATAGTAGGTGAGACTTTTCTGATGAAATTGAACA
GTTTTATAATCAAGAGAATTGGTACAAAGGTTTATACTCAGCTCGacgaa
aaagaacaaaatatggACGGGAAAGAACTTGAAAGCCACGAGACCTTGGT
GGGTTTGCCGGCTAATGAACAACCTCAACTTTCAACGTTTTCTACGTCTc
cagaaaaacaacaaaatgacaATTTCAGTTATTTACGTGAAGTAATGGAA
GATGGAAATAATTTTACAGACATCGTGCATCATCCTGATTTATTGCCCGA
AAATATAACAAAGAGAGAAATTGAAGCATTATCTAAAAACTTGATGCTTG
AAAGAAATCAAATCGGAAACATTGAAGCTCCGTTTTACGGAAAAggtcaa
attcaaaaacttacAAAGGCTGGGAAGCCGAGAAAGAAATATCAAAGGAG
AAAGAACAAAGACAGTAAACTAGAAGAGATTAAACCAATGGACGAAACGA
GTAGTGATAGATCAGAATCACCAAGAGAAATAAACGAGAATCGAAGCAAA
GAAAGTAGCCCAAGTGAAATACCTATGATGAATAGGGAAGATCTATTTAG
AACTGATGCAATGGCTGTGCCAAGAATCAACTTTTCCTTGACTGAATTCC
TTGATATCAGATCACCAACCAAGATGAAACGTCATTCACCAgataacaac
aacaaacaaatgTCGGTCACGGCACAACTCCCGTCTTTCCCGACACAAAA
G Run BLAST on NCBI protein sequence of TCONS_00023753-protein >TCONS_00023753-protein ID=TCONS_00023753-protein|Name=TCONS_00023753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MVKSESLCLPFCGKNLSLANPNEEPGYDAFEKIVGETFLMKLNSFIIKRI
GTKVYTQLDEKEQNMDGKELESHETLVGLPANEQPQLSTFSTSPEKQQND
NFSYLREVMEDGNNFTDIVHHPDLLPENITKREIEALSKNLMLERNQIGN
IEAPFYGKGQIQKLTKAGKPRKKYQRRKNKDSKLEEIKPMDETSSDRSES
PREINENRSKESSPSEIPMMNREDLFRTDAMAVPRINFSLTEFLDIRSPT
KMKRHSPDNNNKQMSVTAQLPSFPTQK Run BLAST on NCBI transcript from alignment at sc0000461:176697..179083+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023753 ID=TCONS_00023753|Name=TCONS_00023753|organism=Clytia hemisphaerica|type=transcript|length=2387bp|location=Sequence derived from alignment at sc0000461:176697..179083+ (Clytia hemisphaerica)
CTCTGCATAAAAAAAATGCAATCTCGATAACCGTGAAAACCTAAATAAAA
GCAATCATGTCGAAACGTCAGAAGAAATAAAGCGCGCGAAGCTACAAAAA
TAGAACTTTTTGGCGCGAAAAGAAGAactgacgtcacttttaaaaaGAAG
ACATGGTATTGCAAGATTGCAGTCGCAAACGGCTGCATAGAAAAAGTACC
AGAAACACGAGGAAAGCAGCATGGTCAAGTCAGAATCTCTATGCTTACCT
TTTTGTGGAAAGAATCTATCGTTGGCTAACCCAAATGAAGAGCCAGGTTA
TGATGCATTTGAGAAGATAGTAGGTGAGACTTTTCTGATGAAATTGAACA
GTTTTATAATCAAGAGAATTGGTACAAAGGTTTATACTCAGCTCGacgaa
aaagaacaaaatatggACGGGAAAGAACTTGAAAGCCACGAGACCTTGGT
GGGTTTGCCGGCTAATGAACAACCTCAACTTTCAACGTTTTCTACGTCTc
cagaaaaacaacaaaatgacaATTTCAGTTATTTACGTGAAGTAATGGAA
GATGGAAATAATTTTACAGACATCGTGCATCATCCTGATTTATTGCCCGA
AAATATAACAAAGAGAGAAATTGAAGCATTATCTAAAAACTTGATGCTTG
AAAGAAATCAAATCGGAAACATTGAAGCTCCGTTTTACGGAAAAggtcaa
attcaaaaacttacAAAGGCTGGGAAGCCGAGAAAGAAATATCAAAGGAG
AAAGAACAAAGACAGTAAACTAGAAGAGATTAAACCAATGGACGAAACGA
GTAGTGATAGATCAGAATCACCAAGAGAAATAAACGAGAATCGAAGCAAA
GAAAGTAGCCCAAGTGAAATACCTATGATGAATAGGGAAGATCTATTTAG
AACTGATGCAATGGCTGTGCCAAGAATCAACTTTTCCTTGACTGAATTCC
TTGGTAAGTAGTTTCTACATCTCTAAAAGGATACATTTTTAATCAACGAG
TAGTGAAAATGCTCAACACAAGGTCCCCATTCAATAAACGCCACCTTTTT
AAAAAGGTCCCTCGATGATgaccccaaaaaattttttaataccTGGAACG
ATTCAAAGGAATATTCAAAGGAATGATACTAATATGAAACCTCGAATCAA
CTTCGAAAAATAATTAGGATAATGTTAAATAACCAGAATATCCCTTTAAA
TATCGGCTCTGTTCTTTCATTTATTCAGATATCAGATCACCAACCAAGAT
GAAACGTCATTCACCAgataacaacaacaaacaaatgTCGGTCACGGCAC
AACTCCCGTCTTTCCCGACACAAAAGATGGACAATAATTCGAACGACTCG
AACACGCTCGATGAAAACCTTAGCACATACAACCAGCCGATGATNTTGAC
AAAATTGAACAGTTTTATAATCAAGAGAATTGGTACAAAGGTTTATACTC
AGCTCGacgaaaaagaacaaaatatggACGGGAAAGAACTTGAAAGCCAG
GAGACCTTGGTGGATTTGCCGGCTAATGAACGACCTCAACTTTCAACGTT
TTCTACGTCTccagaaaaacaacaaaatgacaATTTCAGTTATTTACGTG
AAGTAATGGAAGATGGAAATAATTTTACAGACATCGTGCATCATCCTGAT
TTATTGCCCGAAAATATAACAAAGAGAGAAATTGAAGCATTATCTAAAAA
CTTGATGCTTGAAAGAAATCAAATCGGAAACATTGAAGCTCCGTTTTACG
GAAAAggtcaaattcaaaaacttacAAAGGCTGGGAAGCCGAGAAAGAAA
TATCAAAGGAGAAAGAACAAAGACAGTAAACTAGAAGAGATTAAACCAAT
GGACGAAACGAGTAGTGATAGATCAGAATCACCAAGAGAAATAAACGAGA
ATCGAAGCAAAGAAAGTAGCCCAAGTGAAATACCTATGATGAATAGGGAA
GATCTATTTAGAACTGATGCAATGGCTGTGCCAAGAATCAACTTTTCCTT
GACTGAATTCCTTGGTAAGTAGTTTCTACATCTCTAAAAGGATACATTTT
TAATCAACGAGTAGTGAAAATGCTCAACACAAGGTCCCCATTCAATAAAC
GCCACCTTTTTAAAAAGGTCCCTCGATGATgaccccaaaaaattttttaa
taccTGGAACGATTCAAAGGAATATTCAAAGGAATGATACTAATATGAAA
CCTCGAATCAACTTCGAAAAATAATTAGGATAATGTTAAATAACCAGAAT
ATCCCTTTAAATATCGGCTCTGTTCTTTCATTTATTCAGATATCAGATCA
CCAACCAAGATGAAACGTCATTCACCAgataacaacaacaaacaaatgTC
GGTCACGGCACAACTCCCGTCTTTCCCGACACAAAAG Coding sequence (CDS) from alignment at sc0000461:176697..179083+ >TCONS_00023753 ID=TCONS_00023753|Name=TCONS_00023753|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at sc0000461:176697..179083+ (Clytia hemisphaerica)
ATGGTCAAGTCAGAATCTCTATGCTTACCTTTTTGTGGAAAGAATCTATC
GTTGGCTAACCCAAATGAAGAGCCAGGTTATGATGCATTTGAGAAGATAG
TAGGTGAGACTTTTCTGATGAAATTGAACAGTTTTATAATCAAGAGAATT
GGTACAAAGGTTTATACTCAGCTCGacgaaaaagaacaaaatatggACGG
GAAAGAACTTGAAAGCCACGAGACCTTGGTGGGTTTGCCGGCTAATGAAC
AACCTCAACTTTCAACGTTTTCTACGTCTccagaaaaacaacaaaatgac
aATTTCAGTTATTTACGTGAAGTAATGGAAGATGGAAATAATTTTACAGA
CATCGTGCATCATCCTGATTTATTGCCCGAAAATATAACAAAGAGAGAAA
TTGAAGCATTATCTAAAAACTTGATGCTTGAAAGAAATCAAATCGGAAAC
ATTGAAGCTCCGTTTTACGGAAAAggtcaaattcaaaaacttacAAAGGC
TGGGAAGCCGAGAAAGAAATATCAAAGGAGAAAGAACAAAGACAGTAAAC
TAGAAGAGATTAAACCAATGGACGAAACGAGTAGTGATAGATCAGAATCA
CCAAGAGAAATAAACGAGAATCGAAGCAAAGAAAGTAGCCCAAGTGAAAT
ACCTATGATGAATAGGGAAGATCTATTTAGAACTGATGCAATGGCTGTGC
CAAGAATCAACTTTTCCTTGACTGAATTCCTTGATATCAGATCACCAACC
AAGATGAAACGTCATTCACCAgataacaacaacaaacaaatgTCGGTCAC
GGCACAACTCCCGTCTTTCCCGACACAAAAGATGGTCAAGTCAGAATCTC
TATGCTTACCTTTTTGTGGAAAGAATCTATCGTTGGCTAACCCAAATGAA
GAGCCAGGTTATGATGCATTTGAGAAGATAGTAGGTGAGACTTTTCTGAT
GAAATTGAACAGTTTTATAATCAAGAGAATTGGTACAAAGGTTTATACTC
AGCTCGacgaaaaagaacaaaatatggACGGGAAAGAACTTGAAAGCCAC
GAGACCTTGGTGGGTTTGCCGGCTAATGAACAACCTCAACTTTCAACGTT
TTCTACGTCTccagaaaaacaacaaaatgacaATTTCAGTTATTTACGTG
AAGTAATGGAAGATGGAAATAATTTTACAGACATCGTGCATCATCCTGAT
TTATTGCCCGAAAATATAACAAAGAGAGAAATTGAAGCATTATCTAAAAA
CTTGATGCTTGAAAGAAATCAAATCGGAAACATTGAAGCTCCGTTTTACG
GAAAAggtcaaattcaaaaacttacAAAGGCTGGGAAGCCGAGAAAGAAA
TATCAAAGGAGAAAGAACAAAGACAGTAAACTAGAAGAGATTAAACCAAT
GGACGAAACGAGTAGTGATAGATCAGAATCACCAAGAGAAATAAACGAGA
ATCGAAGCAAAGAAAGTAGCCCAAGTGAAATACCTATGATGAATAGGGAA
GATCTATTTAGAACTGATGCAATGGCTGTGCCAAGAATCAACTTTTCCTT
GACTGAATTCCTTGATATCAGATCACCAACCAAGATGAAACGTCATTCAC
CAgataacaacaacaaacaaatgTCGGTCACGGCACAACTCCCGTCTTTC
CCGACACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023753-exon-sc0000461-1491911889:176697..177649 | TCONS_00023753-exon-sc0000461-1491911889:176697..177649 | Clytia hemisphaerica | exon |
| TCONS_00023753-exon-sc0000461-1510915933:176697..177649 | TCONS_00023753-exon-sc0000461-1510915933:176697..177649 | Clytia hemisphaerica | exon |
| TCONS_00023753-exon-sc0000461-1575043694:176697..177649 | TCONS_00023753-exon-sc0000461-1575043694:176697..177649 | Clytia hemisphaerica | exon |
| TCONS_00023753-exon-sc0000461-1491911889:178986..179083 | TCONS_00023753-exon-sc0000461-1491911889:178986..179083 | Clytia hemisphaerica | exon |
| TCONS_00023753-exon-sc0000461-1510915933:178986..179083 | TCONS_00023753-exon-sc0000461-1510915933:178986..179083 | Clytia hemisphaerica | exon |
| TCONS_00023753-exon-sc0000461-1575043694:178986..179083 | TCONS_00023753-exon-sc0000461-1575043694:178986..179083 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000461 | supercontig | sc0000461:176697..179083 + |
Blast
The following BLAST results are available for this feature:
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