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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023750 ID=TCONS_00023750|Name=TCONS_00023750|organism=Clytia hemisphaerica|type=transcript|length=2174bpRun BLAST on NCBI protein sequence of TCONS_00023750-protein >TCONS_00023750-protein ID=TCONS_00023750-protein|Name=TCONS_00023750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp MAEAPKDADGRLVLDKPRWDQKTFEGRAKHFLNVTDPRNVLATAAQLEAARun BLAST on NCBI transcript from alignment at sc0000461:127698..162185+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023750 ID=TCONS_00023750|Name=TCONS_00023750|organism=Clytia hemisphaerica|type=transcript|length=34488bp|location=Sequence derived from alignment at sc0000461:127698..162185+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000461:127698..162185+ >TCONS_00023750 ID=TCONS_00023750|Name=TCONS_00023750|organism=Clytia hemisphaerica|type=CDS|length=10725bp|location=Sequence derived from alignment at sc0000461:127698..162185+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023750 vs. Swiss-Prot (Human)
Match: SFXN1 (Sideroflexin-1 OS=Homo sapiens GN=SFXN1 PE=1 SV=4) HSP 1 Score: 397.127 bits (1019), Expect = 7.564e-132 Identity = 199/312 (63.78%), Postives = 246/312 (78.85%), Query Frame = 3
Query: 168 LDKPRWDQKTFEGRAKHFLNVTDPRNVLATAAQLEAAKKLVEQYRLGLEPKETSDEDVWQAKKLFDSAYHPDTGNLQFLPGRMSAQVPMNMMITGAMLTFYKTTPAVIFWQWVNQSFNALVNYTNRSGDAELSTNMLLKAYCSXXXXXXXXXXXXXXXXKNFPPIVGRFVPFAAVASANCVNIPLMRQRELLHGIPVLDADGNKVGESKIAAKNAVGMTVVSRIVMAAPGMSLCPLIMNHLEKKAFMKKSPWLASPIQIGLVGIVLVFATPLCCAIFPQVSSISVDKLEPETQEMIRKKT-DMTKVYFNKGL 1100
+ +PRWDQ TF GRA HF VTDPRN+L T QLE+A+K+V YR G+ P ++ ++W+AK ++DSA+HPDTG L GRMSAQVPMNM ITG M+TFY+TTPAV+FWQW+NQSFNA+VNYTNRSGDA L+ N L AY SAT A+ ALGLN L K+ P++GRFVPFAAVA+ANC+NIPLMRQREL GIPV D +GN++GES AAK A+ VVSRI+MAAPGM++ P IMN LEKKAF+K+ PW+++PIQ+GLVG LVFATPLCCA+FPQ SS+SV LE E Q I++ ++ +VYFNKGL
Sbjct: 11 IKEPRWDQSTFIGRANHFFTVTDPRNILLTNEQLESARKIVHDYRQGIVPPGLTENELWRAKYIYDSAFHPDTGEKMILIGRMSAQVPMNMTITGCMMTFYRTTPAVLFWQWINQSFNAVVNYTNRSGDAPLTVNELGTAYVSATTGAVATALGLNALTKHVSPLIGRFVPFAAVAAANCINIPLMRQRELKVGIPVTDENGNRLGESANAAKQAITQVVVSRILMAAPGMAIPPFIMNTLEKKAFLKRFPWMSAPIQVGLVGFCLVFATPLCCALFPQKSSMSVTSLEAELQAKIQESHPELRRVYFNKGL 322 The following BLAST results are available for this feature:
BLAST of TCONS_00023750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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