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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023713 ID=TCONS_00023713|Name=TCONS_00023713|organism=Clytia hemisphaerica|type=transcript|length=2052bp
GTTTTATTTATATTCAGGTTTTGGATATTGGACGCCGTTGTCTTTCGAGT
CATAATAAACGACGATGatgacaaaaaagttaattctaaaattatcaaaa
caataaaagacAGTATAGAATTTCTAACAAGTCATTCATGGAGAGATCTG
TTTTaatataaaaagaaatgaaaatctataaaacaaaagataaaaGGGTG
AAACAACTCCAACTTGTTATTAGTGTAATCACAAAGGGCTTTTATTTTAA
TAATCTTTCTCTCTCTCCCTCTTTCTGAGATAACTTGTTGAGCGTTTTGA
AACCCATTCAAATAGGAACACATCACGAAAGCAGACGAGTAGAAAAAACT
CTCACTGTTTAGGGAAAGTCAATTAAGACATACCAAAAGAAGATAGTATT
AAATtaatttaagcctaaaataaatataaaaaagcacgaaaaaacctaaa
taaaaaattagttcACATCTTCATTACAAAAAAACATTGGGAACGTTATA
GTCATAACATTTGGGACTCTTTGAGTCGgtttgaaataaaatgaatgAGT
GTCGGTTAGtgataaaataaattgttcATTTTTTCTCTCTGTATGAAATC
TAAAAAACGATCTTTGCAAGTTCTTTTCCTTTGCAAGGTCGTACACTCGT
ACActcataaaaatatttcactggTATACCTATTAAATAGGAATTTGTTA
AGAAAACCGAAAACCATCGATGCGGTTTTTCTATGTTTAGAGTGTTTGTC
TTCGgttctttttcatgtttgttGACAAACACTTCAAGCCATTGAAACAC
AGCACTTGAAAACATATTCAATCACTACTGTGAAAGGCAAGCATATAACT
TCCACCATGACTCTCCTGTGACATAAGACAAATCTACTTCCAAGCGCTGC
CACATTATACTGATGTTTCAGAATTTAGCCTGAACACGAATCTATTTGAA
TCGCCATTGAAAGGCAACTCTGACATAGCAAATACAGGCAGCTTTGAAAC
TGCAATAACAAGCGAAATGTCTTCATGCTTGAGTTGAAATACAGTTCCTT
CATTGAGCTGCCGAGTAGGTGAACTATCACTCACCAATGTCCATTCTTGT
CGGCCATCATAACCAACATAAGAAATGCATGGTTGATCACATGTATAGCG
TTCAATAAAAGCTTTTGAAGATAATTCATATGAAATACAATGCGCTAAAT
GCTTCAAAATAGATTCCAATGGGTAATAAAGCTGCTGTCGAGTGGTTCTC
AAATATTTTTGCAAGGGTCGCGCAAGAGTTGGGAAAACAGCTTGAGCTGC
TTCCTCGGGATCCATTGAACCATCAGCTTTCTTGGAAGAATCAAAAGCAT
TGAGTCTGGCCACATGACCAAATGCTTCCTCAGCAGCAGCCACAAGACGG
GCTTTACGTTTTCTGATCCTTCTGTCTAATTCCTGCTCCTCGTAAAAGCG
GTCATTCCTCCCTTCTTTACGACGTCCTGCTGCAGCGGCTGCAATAAAAG
CTTTAGAGGCTTGTTGTGTTAAGGTACCATCACCCTTTCCATCCAAGTCA
TAAATTTTCAAACCAGccagtttgtttatttttgtacgAGATTGAGGTCT
TGGCATGTATGGGTTGTACTCTGTGAAATCAATATAATAGCGCTCTAAAC
AAAACACAGCAGCTTTTTGTATAGAGGATTGACCAATATTATAATACCTC
CTCATTCCATCAACATTTCTGATAATAGATACAGTATATACTTTCTCCAT
TGGTCGAATCCACATCAAAACTAAGGCCATGTAGTGAAGGAACAACATAG
CATCCAAAAATGAACTGGCAAATGAAACAGTCAAGTATTGATTTGTCCCA
TTTCCAATCATCCGAATTGAGTAAAACAACCAAAAGCATATTATGGAAAC
GTAAACTAAAACCATCATTCCAACTTTGAATACATTTAAACGTGGTAAAT
CAACTTTGTTTGGTCGGATATATAAAGCCCATAAGCCAAATATTAAAACA
ATCTCTTTGATAGCAATTGTTATATACAATCCTTCGCAAACTGACCCACA
CT Run BLAST on NCBI transcript from alignment at sc0000460:63984..66120+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023713 ID=TCONS_00023713|Name=TCONS_00023713|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at sc0000460:63984..66120+ (Clytia hemisphaerica)
GTTTTATTTATATTCAGGTTTTGGATATTGGACGCCGTTGTCTTTCGAGT
CATAATAAACGACGATGatgacaaaaaagttaattctaaaattatcaaaa
caataaaagacAGTATAGAATTTCTAACAAGTCATTCATGGAGAGATCTG
TTTTaatataaaaagaaatgaaaatctataaaacaaaagataaaaGGGTG
AAACAACTCCAACTTGTTATTAGTGTAATCACAAAGGGCTTTTATTTTAA
TAATCTTTCTCTCTCTCCCTCTTTCTGAGATAACTTGTTGAGCGTTTTGA
AACCCATTCAAATAGGAACACATCACGAAAGCAGACAAGTAGAAAANTTC
TCCCTCTTTCTCAGATAACTTGTTGAGCGTGTTGAAACCCCTTCAAATAG
GAACACATCACGAAAGCAGACGAGTAGAAAAAACTCTCACTGTTTAGGGA
AAGTCAATTAAGACATACCAAAAGAAGATAGTATTAAATtaatttaagcc
taaaataaatataaaaaagcacgaaaaaacctaaataaaaaattagttcA
CATCTTCATTACAAAAAAACATTGGGAACGTTATAGTCATAACATTTGGG
ACTCTTTGAGTCGgtttgaaataaaatgaatgAGTGTCGGTTAGtgataa
aataaattgttcATTTTTTCTCTCTGTATGAAATCTAAAAAACGATCTTT
GCAAGTTCTTTTCCTTTGCAAGGTCGTACACTCGTACActcataaaaata
tttcactggTATACCTATTAAATAGGAATTTGTTAAGAAAACCGAAAACC
ATCGATGCGGTTTTTCTATGTTTAGAGTGTTTGTCTTCGgttctttttca
tgtttgttGACAAACACTTCAAGCCATTGAAACACAGCACTTGAAAACAT
ATTCAATCACTACTGTGAAAGGCAAGCATATAACTTCCACCATGACTCTC
CTGTGACATAAGACAAATCTACTTCCAAGCGCTGCCACATTATACTGATG
TTTCAGAATTTAGCCTGAACACGAATCTATTTGAATCGCCATTGAAAGGC
AACTCTGACATAGCAAATACAGGCAGCTTTGAAACTGCAATAACAAGCGA
AATGTCTTCATGCTTGAGTTGAAATACAGTTCCTTCATTGAGCTGCCGAG
TAGGTGAACTATCACTCACCAATGTCCATTCTTGTCGGCCATCATAACCA
ACATAAGAAATGCATGGTTGATCACATGTATAGCGTTCAATAAAAGCTTT
TGAAGATAATTCATATGAAATACAATGCGCTAAATGCTTCAAAATAGATT
CCAATGGGTAATAAAGCTGCTGTCGAGTGGTTCTCAAATATTTTTGCAAG
GGTCGCGCAAGAGTTGGGAAAACAGCTTGAGCTGCTTCCTCGGGATCCAT
TGAACCATCAGCTTTCTTGGAAGAATCAAAAGCATTGAGTCTGGCCACAT
GACCAAATGCTTCCTCAGCAGCAGCCACAAGACGGGCTTTACGTTTTCTG
ATCCTTCTGTCTAATTCCTGCTCCTCGTAAAAGCGGTCATTCCTCCCTTC
TTTACGACGTCCTGCTGCAGCGGCTGCAATAAAAGCTTTAGAGGCTTGTT
GTGTTAAGGTACCATCACCCTTTCCATCCAAGTCATAAATTTTCAAACCA
GccagtttgtttatttttgtacgAGATTGAGGTCTTGGCATGTATGGGTT
GTACTCTGTGAAATCAATATAATAGCGCTCTAAACAAAACACAGCAGCTT
TTTGTATAGAGGATTGACCAATATTATAATACCTCCTCATTCCATCAACA
TTTCTGATAATAGATACAGTATATACTTTCTCCATTGGTCGAATCCACAT
CAAAACTAAGGCCATGTAGTGAAGGAACAACATAGCATCCAAAAATGAAC
TGGCAAATGAAACAGTCAAGTATTGATTTGTCCCATTTCCAATCATCCGA
ATTGAGTAAAACAACCAAAAGCATATTATGGAAACGTAAACTAAAACCAT
CATTCCAACTTTGAATACATTTAAACGTGGTAAATCAACTTTGTTTGGTC
GGATATATAAAGCCCATAAGCCAAATATTAAAACAATCTCTTTGATAGCA
ATTGTTATATACAATCCTTCGCAAACTGACCCACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023713-exon-sc0000460-1491911889:63984..64304 | TCONS_00023713-exon-sc0000460-1491911889:63984..64304 | Clytia hemisphaerica | exon |
| TCONS_00023713-exon-sc0000460-1510915933:63984..64304 | TCONS_00023713-exon-sc0000460-1510915933:63984..64304 | Clytia hemisphaerica | exon |
| TCONS_00023713-exon-sc0000460-1575043694:63984..64304 | TCONS_00023713-exon-sc0000460-1575043694:63984..64304 | Clytia hemisphaerica | exon |
| TCONS_00023713-exon-sc0000460-1491911889:64390..66120 | TCONS_00023713-exon-sc0000460-1491911889:64390..66120 | Clytia hemisphaerica | exon |
| TCONS_00023713-exon-sc0000460-1510915933:64390..66120 | TCONS_00023713-exon-sc0000460-1510915933:64390..66120 | Clytia hemisphaerica | exon |
| TCONS_00023713-exon-sc0000460-1575043694:64390..66120 | TCONS_00023713-exon-sc0000460-1575043694:64390..66120 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000460 | supercontig | sc0000460:63984..66120 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009539 | VANGL |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007275 | multicellular organism development |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007275 |
multicellular organism development |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00023713 vs. Swiss-Prot (Human)
Match: VANG1 (Vang-like protein 1 OS=Homo sapiens GN=VANGL1 PE=1 SV=1) HSP 1 Score: 324.324 bits (830), Expect = 1.352e-101 Identity = 169/386 (43.78%), Postives = 250/386 (64.77%), Query Frame = -3
Query: 908 CGSVCEGLYITIAIKEIVLIFGLWALYIRPNKVDLPRLNVFKVGMMVLVYVSIICFWLFYSIRMIGNGTNQYL-TVSFASSFLDAMLFLHYMALVLMWIRPMEKVYTVSIIRNVDGMRRYYNIGQSSIQKAAVFCLERYYIDFTEYNPYMPRPQSRTKINKLAGLKIYDLDGKGDGTLTQQXXXXXXXXXXAGRRKEGRNDRFYEEQELDRRIRKRKARLVAAAEEAFGHVARLNAFDSSKKADGSMDPEEAAQAVFPTLARPLQKYLRTTRQQLYYPLESILKHLAHCISYELSSKAFIERYTCDQPCISYVGYDGRQ----EWTLVSDSSPTRQLNEGTVFQLKHEDISLVIAVSKLPVFAMSELPFNGDSNRFVFRLNSETSV 2050
CG++CEGL+I++A K ++L+ G WAL+ R + D+PR+ VF+ ++VL+++ ++ +WLFY +R++ + Y V +A S +DA+LF+HY+A+VL+ +R ++ ++T+ ++R+ DG R+Y++G SIQ+AA+ LE YY DFT YNP + +AGLK+Y++DG + Q + AA N+ +YEE E +RR++KRKARLV A EEAF H+ RL A + K MDP EAAQA+FP++AR LQKYLR TRQQ Y+ +ESIL+HLA CI+ ++ KAF+ERY P + YD + +W LVSD + T L +G VF LK D SLV+ V K+P +SE + S++FV RL SETSV
Sbjct: 145 CGTICEGLFISMAFKLLILLIGTWALFFRKRRADMPRVFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARRR---DSSHNELYYEEAEHERRVKKRKARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPREAAQAIFPSMARALQKYLRITRQQNYHSMESILQHLAFCITNGMTPKAFLERYLSAGPTLQ---YDKDRWLSTQWRLVSDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIILSEEFIDPKSHKFVLRLQSETSV 524
The following BLAST results are available for this feature:
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