|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023709 ID=TCONS_00023709|Name=TCONS_00023709|organism=Clytia hemisphaerica|type=transcript|length=7323bpRun BLAST on NCBI transcript from alignment at sc0000460:13377..46573+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023709 ID=TCONS_00023709|Name=TCONS_00023709|organism=Clytia hemisphaerica|type=transcript|length=33197bp|location=Sequence derived from alignment at sc0000460:13377..46573+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023709 vs. Swiss-Prot (Human)
Match: KMT2B (Histone-lysine N-methyltransferase 2B OS=Homo sapiens GN=KMT2B PE=1 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 8.466e-97 Identity = 213/656 (32.47%), Postives = 326/656 (49.70%), Query Frame = 1
Query: 934 HLVKLPWPNDSNEDAAWVSGHHLCMTNHTGAFIPSLCFLCGSAGEEKMVTCNSCCEMFHTYCLDFE----PIDWKEWNCDRCKRCKVCGYK----ENLLMCDTCHDCYHAECLGPFYQRDTEGAEESWXXXXXXXXXXXNRRTAGKLKTSRWMYGFTMCEQCGKNWKRKNYCPVCEVLYQEDDDSLKMMFCSQCERWIHMECEGITNDDYEILADLPDSIPYICKLCSKLDKHDTQWYKEVREELNSGFLKVYYDLISHRDFKQI-------KKNLSISVNPSHIQCLEEFDGIFKSIEDRKFASVEDFHQASSSAVTKIQDYLQAGVILDISIGYIPDATTLLPLYQKSLKTIFSWYIPQELKTEKEKSQLPCSEKSNTEKNGKTNEEDEETISLADEEALRLDHMYL------AETPHENEADGGEEKDNMDISMDSVVESVEHLPVAKKDGRRCLFCGVVGDQNQNSAGRLLYAGLDEWVHINCALWSAEVYEDDAGRLKNVHEALKRGNKLKCEHCACYGASIGCCVLKCSRSYHFICAKKTDAVFQDDKKMYCPVHASKANKTLILDDDEFAVTRRVLVDLARFKSMKRINRGVNPKSVTVLCGNHQLSSLGCLSEKSDSKHYLMPIGYRITRVYWSTKNPKTKCRYMCEI 2838
H V++ + D + + W+ G +T+ G P +C LC S G ++V C CC+ FH +CL+ P W C RCK C VCG K ++LL C+ C YH CLGP Y W+C CV+CK C T GK W +++C +C + +++ NYCP+C Y+++D KMM C+QC+ W+H +CEG++++DYEIL+ LPDS+ Y C C+ + +W + + L G +V L+S + + + P +Q + + ED + SV F + V + + + G D G + L K L++ F W+ + K + ++LP N LDH+Y ETP + G D + HL +D R+C C GD + AGRLLY G +EW H+NCA+WSAEV+E++ G LKNVH A+ RG +++CE C GA++GCC+ C ++HF+CA+ + +FQDDKK++C H + I++ D F V RRV VD ++ G+ P ++ VL G+ ++ SLG LS+ SD + L PIGY+ +R+YWST + + +C Y C I
Sbjct: 1169 HRVRVDFKEDCDLENVWLMGGLSVLTSVPGG-PPMVCLLCASKGLHELVFCQVCCDPFHPFCLEEAERPLPQHHDTWCCRRCKFCHVCGRKGRGSKHLLECERCRHAYHPACLGPSYPTRATRKRRHWICSACVRCKSCGA-TPGKNWDVEWSGDYSLCPRCTQLYEKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLSDEDYEILSGLPDSVLYTCGPCAGAAQ--PRWREALSGALQGGLRQVLQGLLSSKVVGPLLLCTQCGPDGKQLHPGPCGLQA------VSQRFEDGHYKSVHSFME---DMVGILMRHSEEGETPDRRAG-----GQMKGLLLKLLESAFGWFDAHDPKYWRRSTRLPNGVLPNAVLPPS------------------LDHVYAQWRQQEPETPESGQPPG----DPSAAFQGKDPAAFSHL----EDPRQCALCLKYGDADSKEAGRLLYIGQNEWTHVNCAIWSAEVFEENDGSLKNVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDKKVFCQKHTDLLDGKEIVNPDGFDVLRRVYVDFEGINFKRKFLTGLEPDAINVLIGSIRIDSLGTLSDLSDCEGRLFPIGYQCSRLYWSTVDARRRCWYRCRI 1780 HSP 2 Score: 304.679 bits (779), Expect = 1.217e-82 Identity = 154/305 (50.49%), Postives = 210/305 (68.85%), Query Frame = 1
Query: 5899 LLFVISNDDGWRCESASLQEIWKTLLRQINEGRTDRNIPSLPFDLNDAYEMFGLSKDFITYLMEQLPGGHKCRSYKFQHHLPSINDDEDQNLPENPSGCARSEIAVKTAEKDMFAWLSSTYRLX------XXXXXXXXXXXXXXSGGQDLPTAMKYRFLKNTAKDHVGVYRSPIQGCGLFCKKTIESGDMIIEYSGEKIRSVLTDKREDYYERKGLGCYMFRIDSMDVVDATMCGNAARFINHSCDPNCFSRIINVDGSKKIIIFATRRINVGEELTYDYKFAQED--DKLPCYCGSKKCRKYLN 6789
L F IS++DG+ E+ SL+ W+TL+ ++ E R + L F + G+ D + +L EQLPG +C+ YKF++H +E P NP G AR+E+ ++ DMF +L+S +R+ ++ED++Q + +LP AM++R LK T+K+ VGVYRS I G GLFCK+ I++G+M+IEYSG IRSVLTDKRE +Y+ KG+GCYMFR+D DVVDATM GNAARFINHSC+PNCFSR+I+V+G K I+IFA RRI GEELTYDYKF ED +KLPC CG+K+CR++LN
Sbjct: 2414 LRFEISSEDGFSVEAESLEGAWRTLIEKVQEARGHARLRHLSFSGMSGARLLGIHHDAVIFLAEQLPGAQRCQHYKFRYHQQGEGQEEP---PLNPHGAARAEVYLRKCTFDMFNFLASQHRVLPEGATCDEEEDEVQLRSTRRATSLELPMAMRFRHLKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRSVLTDKREKFYDGKGIGCYMFRMDDFDVVDATMHGNAARFINHSCEPNCFSRVIHVEGQKHIVIFALRRILRGEELTYDYKFPIEDASNKLPCNCGAKRCRRFLN 2715 The following BLAST results are available for this feature:
BLAST of TCONS_00023709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.