TCONS_00023696 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023696
Unique Name	TCONS_00023696
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2445

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000458:253961..256405-

transcript sequence

>TCONS_00023696 ID=TCONS_00023696|Name=TCONS_00023696|organism=Clytia hemisphaerica|type=transcript|length=2445bp
CAATACGGCCATCGGAATATCTATAACAAACGACGCTACAAAGCGCTTTC
TCTGCGTTCAAATCTTGGAATCGAATAATGCACTACTTTGGCTaccattt
tccaaattttaaggTTGATTGATCTCTGCCTCAGAGGAACACTCAAATGG
GGACTGTGACCTAATCTTGATTTTGTAATTCGCGACCTGATTGGTTAATC
AGGATATATGAGGAAGTTTGATTGGTCTCCTATTTTGGGGTTTTCACTGA
GAGATTTCTAcatcaaaaaaattcttgagaGACGTTGAAATTGAAGGGGC
TGGAAGTTGAACGTAGACGAAACTGGACAAGATATAAACTTATCGTTTTA
TATCCTGAAATCCTTCGAAAAATAATGTCTTCTGCACAGATTATGATATT
CGATATGGATCTACAGATTGATAAGAAGAAATTTCTGCAAGGAGAAAGCT
CAGTTCCAACTGCTCCACCACCAAGTCCAAATTCGAGTAACCGTAGAAAA
TTTGCAAATCCAACAGTACTTCCTATGTCTAGACTTATTGGGTGTTGTGA
AGAACTTGTATCGAAACAAACTTTAGACTCTACAAACCTATATAAAAGCA
AGCCAGTATCAATGAAAAGAAAGACGAGCGATAGTGATGGTTTTTCTTCC
TGTTCTACATCATCTTCAGCAGGAACTTCACCTGGAGCTACATCAGACTA
TTCTTGCTCTTTTGGCAAACGTAGTAGATCTTCTTTTGAAGTTGGAAgta
attcttttaaaagattgGACTTTTCAATGAGTGAACTATCAGCAGCCATT
AATGCTAGCCAATCTAATGATGCGGCAATGGAATTTTGAATGGTAGTTGT
TTAACATCGcagatttaaattttaaaagaggttttatattttttggagCT
TTGCACAattcttttctcttttaatGACTAGGATGAAAGTTCGAGACTAA
AGCCTTGATTTTCTCAAGTAAACTTTGAAACTCGTTTCTGAGAAAAGTTT
CCAGGGTGGTAGATTACTTTATCGCTGTATTGCTTTGGTTCTTTGATTTA
AAGTCTAAATACCTTTgtcaatgggctattccatttttaaaccatacagg
ggtattaacgaacttttccagggggtctgagccttgattttccaaggggt
ttttgttcatttttcagattttccaagggggatattaaaggtttccaggg
ggttctctcCTCCTAAACTGACATCAATAGTTATTTTCCGGGCCGTTTTT
CACtaaatttcactttccaggggtgtcgacccctaatttccaggggatgg
tttgttatccaaaatttccagaggggttagtgaaaaaagttcgtcaatac
ccctgtatagacaattttttttttggaatagcccaatggGCATTTGTTGA
TAAACTCCAATGTGAGAGAGTATGTTCAGATTGAGAATGAGCTTCATTTG
CCCTTTTAAATTTAAGTACGGGAAATTCtacatggaaaaaaattaaggTT
TGGGAAAGAAGTGGGTGAAATATTGATTTCAAGATTTCGCAATGGCTATA
GGCTATAGCCCTGTAGATAAACCTTTCATTGTCAGAACTAGAACAATACA
ATTTAAAAGTTGTCAATTCATCTCATTCTCATGAAAAATGTAAATACTGA
ATTTTTCTACATTCACAAACactgttttttttcataattgaAGAATAGGG
TGTAGCTTTATTAAAATAGGTTATatttgagattttaataaatattatat
ttatgtttatAGTTATTCAGTTGCTGCTTCATATAACAAGCAAGTGCCTG
GTGCTTTTTAAAATACAAATGATTGCGCATATTGCCAAAGCATGTTGACT
ATAAAAAATCTTGCAGTCTATCTACTGTCAAAGACCATGAAAGACCCTGT
TTGGGGtgatatcttttctttttctgcaAAAGATTTTCCTAAAACTTATG
CTGAGAGCTTTGCAACCAGACCAATAATTAAGCATTGCATCTTGAAAAGa
aagtgttttttctttattttatttttgtaaataatgaATTATCTAGTTAG
AAACCTGTTAAAATATGATAAGCAGGAAGAATCTTAAcaatattattata
tttttcagaGATTTTACGTATTTTAAATCACGTTTAAAAGCTAtttgaat
cttaaattttaaagttttctatTAGATTAAGCTTTAGCCATAGCTAGCCC
TTGATAGGAACTATATGTAAATATGTACTGAATTTCCACTtagtttaatt
tatttttatgtaCATTAGTTACATTTATGTACAATTAATTACTTTCTTTG
AAGGAAAGAATATTTTATCTacattttgaaaactcaaaagttTTAAGTTA
TTGGTCATGAAAATAAGGATCTactttttgaattcttttgctaATTTTGT
GTAACTGAGATTAAACATATTGGACAAATTTTTTGAGGGGAATCG

Run BLAST on NCBI

transcript from alignment at sc0000458:253961..256405-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023696 ID=TCONS_00023696|Name=TCONS_00023696|organism=Clytia hemisphaerica|type=transcript|length=2445bp|location=Sequence derived from alignment at sc0000458:253961..256405- (Clytia hemisphaerica)
CAATACGGCCATCGGAATATCTATAACAAACGACGCTACAAAGCGCTTTC
TCTGCGTTCAAATCTTGGAATCGAATAATGCACTACTTTGGCTACCATTT
TCCAAATTTTAAGGTTGATTGATCTCTGCCTCAGAGGAACACTCAAATGG
GGACTGTGACCTAATCTTGATTTTGTAATTCGCGACCTGATTGGTTAATC
AGGATATATGAGGAAGTTTGATTGGTCTCCTATTTTGGGGTTTTCACTGA
GAGATTTCTACATCAAAAAAATTCTTGAGAGACGTTGAAATTGAAGGGGC
TGGAAGTTGAACGTAGACGAAACTGGACAAGATATAAACTTATCGTTTTA
TATCCTGAAATCCTTCGAAAAATAATGTCTTCTGCACAGATTATGATATT
CGATATGGATCTACAGATTGATAAGAAGAAATTTCTGCAAGGAGAAAGCT
CAGTTCCAACTGCTCCACCACCAAGTCCAAATTCGAGTAACCGTAGAAAA
TTTGCAAATCCAACAGTACTTCCTATGTCTAGACTTATTGGGTGTTGTGA
AGAACTTGTATCGAAACAAACTTTAGACTCTACAAACCTATATAAAAGCA
AGCCAGTATCAATGAAAAGAAAGACGAGCGATAGTGATGGTTTTTCTTCC
TGTTCTACATCATCTTCAGCAGGAACTTCACCTGGAGCTACATCAGACTA
TTCTTGCTCTTTTGGCAAACGTAGTAGATCTTCTTTTGAAGTTGGAAGTA
ATTCTTTTAAAAGATTGGACTTTTCAATGAGTGAACTATCAGCAGCCATT
AATGCTAGCCAATCTAATGATGCGGCAATGGAATTTTGAATGGTAGTTGT
TTAACATCGCAGATTTAAATTTTAAAAGAGGTTTTATATTTTTTGGAGCT
TTGCACAATTCTTTTCTCTTTTAATGACTAGGATGAAAGTTCGAGACTAA
AGCCTTGATTTTCTCAAGTAAACTTTGAAACTCGTTTCTGAGAAAAGTTT
CCAGGGTGGTAGATTACTTTATCGCTGTATTGCTTTGGTTCTTTGATTTA
AAGTCTAAATACCTTTGTCAATGGGCTATTCCATTTTTAAACCATACAGG
GGTATTAACGAACTTTTCCAGGGGGTCTGAGCCTTGATTTTCCAAGGGGT
TTTTGTTCATTTTTCAGATTTTCCAAGGGGGATATTAAAGGTTTCCAGGG
GGTTCTCTCCTCCTAAACTGACATCAATAGTTATTTTCCGGGCCGTTTTT
CACTAAATTTCACTTTCCAGGGGTGTCGACCCCTAATTTCCAGGGGATGG
TTTGTTATCCAAAATTTCCAGAGGGGTTAGTGAAAAAAGTTCGTCAATAC
CCCTGTATAGACAATTTTTTTTTTGGAATAGCCCAATGGGCATTTGTTGA
TAAACTCCAATGTGAGAGAGTATGTTCAGATTGAGAATGAGCTTCATTTG
CCCTTTTAAATTTAAGTACGGGAAATTCTACATGGAAAAAAATTAAGGTT
TGGGAAAGAAGTGGGTGAAATATTGATTTCAAGATTTCGCAATGGCTATA
GGCTATAGCCCTGTAGATAAACCTTTCATTGTCAGAACTAGAACAATACA
ATTTAAAAGTTGTCAATTCATCTCATTCTCATGAAAAATGTAAATACTGA
ATTTTTCTACATTCACAAACACTGTTTTTTTTCATAATTGAAGAATAGGG
TGTAGCTTTATTAAAATAGGTTATATTTGAGATTTTAATAAATATTATAT
TTATGTTTATAGTTATTCAGTTGCTGCTTCATATAACAAGCAAGTGCCTG
GTGCTTTTTAAAATACAAATGATTGCGCATATTGCCAAAGCATGTTGACT
ATAAAAAATCTTGCAGTCTATCTACTGTCAAAGACCATGAAAGACCCTGT
TTGGGGTGATATCTTTTCTTTTTCTGCAAAAGATTTTCCTAAAACTTATG
CTGAGAGCTTTGCAACCAGACCAATAATTAAGCATTGCATCTTGAAAAGA
AAGTGTTTTTTCTTTATTTTATTTTTGTAAATAATGAATTATCTAGTTAG
AAACCTGTTAAAATATGATAAGCAGGAAGAATCTTAACAATATTATTATA
TTTTTCAGAGATTTTACGTATTTTAAATCACGTTTAAAAGCTATTTGAAT
CTTAAATTTTAAAGTTTTCTATTAGATTAAGCTTTAGCCATAGCTAGCCC
TTGATAGGAACTATATGTAAATATGTACTGAATTTCCACTTAGTTTAATT
TATTTTTATGTACATTAGTTACATTTATGTACAATTAATTACTTTCTTTG
AAGGAAAGAATATTTTATCTACATTTTGAAAACTCAAAAGTTTTAAGTTA
TTGGTCATGAAAATAAGGATCTACTTTTTGAATTCTTTTGCTAATTTTGT
GTAACTGAGATTAAACATATTGGACAAATTTTTTGAGGGGAATCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013310	XLOC_013310	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023696-exon-sc0000458-1575043694:253961..256405	TCONS_00023696-exon-sc0000458-1575043694:253961..256405	Clytia hemisphaerica	exon
TCONS_00023696-exon-sc0000458-1510915933:253961..256405	TCONS_00023696-exon-sc0000458-1510915933:253961..256405	Clytia hemisphaerica	exon
TCONS_00023696-exon-sc0000458-1491911889:253961..256405	TCONS_00023696-exon-sc0000458-1491911889:253961..256405	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000458	supercontig	sc0000458:253961..256405 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31081	0.830295	1.10055	1.19115	14.8942	11.9762	21.3566	24.3855	9.8261	11.1416	7.96395	15.7471	15.4153	14.6251	10.3828	12.3929	11.1632	15.9738	6.78782	7.96594	14.1261	14.8435	7.25214	6.93612	12.2583	13.2092	16.7305	13.5727	16.2882	15.3826

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023696 vs. Swiss-Prot (Human)

BLAST of TCONS_00023696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023696 (transcript) - C. hemisphaerica