TCONS_00023692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023692
Unique NameTCONS_00023692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023692 ID=TCONS_00023692|Name=TCONS_00023692|organism=Clytia hemisphaerica|type=transcript|length=400bp
CGATGAGATAAACCAGCACTCAGTCATATGTAATAGTAAATACACACAAG
AAAGAAGAGGATGGGAAATTACACTAAAGATCATAATTTCGAACGTTGTA
TCTCCTTCATGTCCATACTATCATCCGAATCTAAAATCTTCTTCTATATT
TTCCTCATTGGATTCGGTGTATTCGGCACATTGTTAAATGCATACGTTCT
TTATTTAATGGTGAGATTTGAAGAACTCAGAAAAGGTGGAAATAAATTAT
TCTTTTCCATGTTTGTGGCTGATTTTCTGGTGACAAGTTTCTTTGTAGTT
ACCAAACTCCTGCAGATGTATTTCTCCGACCTGTGCAGTGTCAACAAGTt
agAGTGGACTTTCTATGAATTGGGAATCAATCACTATGgcattattttga
Run BLAST on NCBI

protein sequence of TCONS_00023692-protein

>TCONS_00023692-protein ID=TCONS_00023692-protein|Name=TCONS_00023692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MGNYTKDHNFERCISFMSILSSESKIFFYIFLIGFGVFGTLLNAYVLYLM
VRFEELRKGGNKLFFSMFVADFLVTSFFVVTKLLQMYFSDLCSVNKLEWT
FYELGINHYGIIL
Run BLAST on NCBI

transcript from alignment at sc0000458:261276..262107+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023692 ID=TCONS_00023692|Name=TCONS_00023692|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0000458:261276..262107+ (Clytia hemisphaerica)
CGATGAGATAAACCAGCACTCAGTCATATGTAATAGTAAATACACACAAG
AAAGAAGAGGATGGGAAATTACACTAAAGATCATAATTTCGAACGTTGTA
TCTCCTTCATGTCCATACTATCATCCGAATCTAAAATCTTCTTCTATATT
TTCCTCATTGGATTCGGTGTATTCGGCACATTGTTAAATGCATACGTTCT
TTATTTAATGGTGAGATTTGAAGAACTCAGAAAAGGTGGAAATAAATTAT
TCTTTTCCATGTTTGTGGCTGATTTTCTGGTGACAAGTTTCTTTGTAGTT
ACCAAACTCCTGCAGATGTATTTCTCCGACCTGTGCAGTGTCAACAAGTt
aggtaatcgtttgaaatacacgtttttatttataagaacatccaacattt
ttgaagccttcggatgttcttaactttttgaattttaagcctaaaaatgt
atCTTAAAACACTCTTGATTTTAccatttcttaagaaatcgggtgtttta
gattcggcaaaaccttaaaatgttcttaacttgttcttaatacttTTGCC
CTCATGCTTACTatatgttcttatgaaaaggTGTATCTTTAACTAGTTTT
TTCCTTTGCTCTAGACAACCAACCAACTGAAATCGGGTGTTCTAGGTGTT
CTAGAGTATTTTGAcaatcgaagtcttatgttcttatatagcttgttaTA
GTTCATtctataaattattttgagtgcaactaCTGCCTCGTCTGAAGCCA
TTACCAAAAAGTTGATTAAATCTCTTGCGTCTAGAGTGGACTTTCTATGA
ATTGGGAATCAATCACTATGgcattattttga

Coding sequence (CDS) from alignment at sc0000458:261276..262107+

>TCONS_00023692 ID=TCONS_00023692|Name=TCONS_00023692|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000458:261276..262107+ (Clytia hemisphaerica)
ATGGGAAATTACACTAAAGATCATAATTTCGAACGTTGTATCTCCTTCAT
GTCCATACTATCATCCGAATCTAAAATCTTCTTCTATATTTTCCTCATTG
GATTCGGTGTATTCGGCACATTGTTAAATGCATACGTTCTTTATTTAATG
GTGAGATTTGAAGAACTCAGAAAAGGTGGAAATAAATTATTCTTTTCCAT
GTTTGTGGCTGATTTTCTGGTGACAAGTTTCTTTGTAGTTACCAAACTCC
TGCAGATGTATTTCTCCGACCTGTGCAGTGTCAACAAGTtagAGTGGACT
TTCTATGAATTGGGAATCAATCACTATGgcattattttgATGGGAAATTA
CACTAAAGATCATAATTTCGAACGTTGTATCTCCTTCATGTCCATACTAT
CATCCGAATCTAAAATCTTCTTCTATATTTTCCTCATTGGATTCGGTGTA
TTCGGCACATTGTTAAATGCATACGTTCTTTATTTAATGGTGAGATTTGA
AGAACTCAGAAAAGGTGGAAATAAATTATTCTTTTCCATGTTTGTGGCTG
ATTTTCTGGTGACAAGTTTCTTTGTAGTTACCAAACTCCTGCAGATGTAT
TTCTCCGACCTGTGCAGTGTCAACAAGTtagAGTGGACTTTCTATGAATT
GGGAATCAATCACTATGgcattattttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013306XLOC_013306Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023692-proteinTCONS_00023692-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023692-exon-sc0000458-1491911889:261276..261627TCONS_00023692-exon-sc0000458-1491911889:261276..261627Clytia hemisphaericaexon
TCONS_00023692-exon-sc0000458-1510915933:261276..261627TCONS_00023692-exon-sc0000458-1510915933:261276..261627Clytia hemisphaericaexon
TCONS_00023692-exon-sc0000458-1575043694:261276..261627TCONS_00023692-exon-sc0000458-1575043694:261276..261627Clytia hemisphaericaexon
TCONS_00023692-exon-sc0000458-1491911889:262060..262107TCONS_00023692-exon-sc0000458-1491911889:262060..262107Clytia hemisphaericaexon
TCONS_00023692-exon-sc0000458-1510915933:262060..262107TCONS_00023692-exon-sc0000458-1510915933:262060..262107Clytia hemisphaericaexon
TCONS_00023692-exon-sc0000458-1575043694:262060..262107TCONS_00023692-exon-sc0000458-1575043694:262060..262107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000458supercontigsc0000458:261276..262107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.247413	1.97656	1.79609	1.79305	2.60335	0	0.142921	0	0	0.359182	0.525589	0	0	0.199429	0.533956	0	0.543638	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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