TCONS_00023668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023668
Unique NameTCONS_00023668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023668 ID=TCONS_00023668|Name=TCONS_00023668|organism=Clytia hemisphaerica|type=transcript|length=433bp
gttgtttacatttttcatggTAATGGTtattccagaaaaagatttACTCG
TTCAGTACCGTTTCTTATATTTTgtgtaagaaatatttttacataaaata
tGAACAATAATAGAATTAATCAATATGTACAATGAACTATCGCTCCAACC
TAGTAAAAATTATGGCCCTTCTTTGCCCTTGACCCCTTTATTACGTCCTT
ATTGGGCTAGAAAGAATCCTGGTTGATGACTGATACAGGGATTCTAAGGG
TCAAAACAAAGGAAGTACAACCCCGTATTAGAGACACAGACTCttgttca
actttttaaaaagaggTGATTTACCATCCCAATGGCATTCGCCTCCTTAA
TGCGCAGGCGACGTGTCATTCTTCgccacggcatgacgtcagtattgggg
tacaacagaacacttactaaagattgATTACAT
Run BLAST on NCBI

transcript from alignment at sc0000457:158077..158509

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023668 ID=TCONS_00023668|Name=TCONS_00023668|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at sc0000457:158077..158509 (Clytia hemisphaerica)
ATGTAATcaatctttagtaagtgttctgttgtaccccaatactgacgtca
tgccgtggcGAAGAATGACACGTCGCCTGCGCATTAAGGAGGCGAATGCC
ATTGGGATGGTAAATCAcctctttttaaaaagttgaacaaGAGTCTGTGT
CTCTAATACGGGGTTGTACTTCCTTTGTTTTGACCCTTAGAATCCCTGTA
TCAGTCATCAACCAGGATTCTTTCTAGCCCAATAAGGACGTAATAAAGGG
GTCAAGGGCAAAGAAGGGCCATAATTTTTACTAGGTTGGAGCGATAGTTC
ATTGTACATATTGATTAATTCTATTATTGTTCatattttatgtaaaaata
tttcttacacAAAATATAAGAAACGGTACTGAACGAGTaaatctttttct
ggaataACCATTAccatgaaaaatgtaaacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013293XLOC_013293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023668-exon-sc0000457-1491911889:158077..158509TCONS_00023668-exon-sc0000457-1491911889:158077..158509Clytia hemisphaericaexon
TCONS_00023668-exon-sc0000457-1510915933:158077..158509TCONS_00023668-exon-sc0000457-1510915933:158077..158509Clytia hemisphaericaexon
TCONS_00023668-exon-sc0000457-1575043694:158077..158509TCONS_00023668-exon-sc0000457-1575043694:158077..158509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000457supercontigsc0000457:158077..158509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.154448	0	0	0.213588	0.843901	1.22176	1.14379	0.400398	0.165319	0.641852	0.421928	0.316006	0.984527	0.089935	0.096514	0.832281	0.60933	0.673458	0.352362	0.612534	0.448159	0	0.330199	1.36039	2.57999	0.434348	0.463548	0.351585	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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