TCONS_00023650 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023650
Unique Name	TCONS_00023650
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	406

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000457:126346..133448-

transcript sequence

>TCONS_00023650 ID=TCONS_00023650|Name=TCONS_00023650|organism=Clytia hemisphaerica|type=transcript|length=406bp
AAAGTGTTGTAAATGATTTTCGTATTTCAGACTTTTGATTTTGCTTTGGG
TTTTGCTGTAGAGATTGCTGAAGTTTGCTGAAATGCATGCGTTGTGATCT
CGATCTATTTCGACTGACCGATGGACCAACTTTATCTAGCAATCATCTAC
TTTGGATTGATGTTGGTTATGAACAATTTCTCAAACACCTGtggaaaata
tcaaatatcctTTGGAAGATCTCAGCAGCAGCATGATAATCCATGATCCA
ATTGGAAAGTATCTTGCGAGAAAAATGGAGCAATCTAATTCAATCAACAA
TGGGTATGTATATTTCTCTTTATGTAAAAGACCAGCTTGTATACAAGAGT
TTCTTTAAAACATTGTTAATTTTGAATAATCTCTGTCTGGGATGACTACT
CAAAAT

Run BLAST on NCBI

transcript from alignment at sc0000457:126346..133448-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023650 ID=TCONS_00023650|Name=TCONS_00023650|organism=Clytia hemisphaerica|type=transcript|length=7103bp|location=Sequence derived from alignment at sc0000457:126346..133448- (Clytia hemisphaerica)
AAAGTGTTGTAAATGATTTTCGTATTTCAGACTTTTGATTTTGCTTTGGG
TTTTGCTGTAGAGATTGCTGAAGTTTGCTGAAATGCATGCGTTGTGATCT
CGATCTATTTCGACTGACCGATGGACCAACTTTATCTAGGTAGGTGTTTT
ATTTCTTAGGGATTTTTCATTCATTAGCTGATGTGTATTGTAATAACCTA
CTTGGTTGGCCTGGGCGGGATCTATAATCTATCAGTTACCGTGAGAGGTC
CTAAAGCCGACAGCCCAGCCTAAAGCCGATGGGGTCTTTCAAAGATACAA
ACTAAAATAAAAACAAACCTTTCGCTGTGACGCAACGAAGATACCAAAGT
GTCAACTAAACTGAGAGATTTGATACACTGAACCAATACACCTTATCGGA
AATTCTACAAAAACAATTGCGCTAAAATGGATCCGTTGAAATTGGGAGGT
AAACATAAATGGTAGCGAGAGTAGCGACGGTATGGCTAGCAATCCATGGA
GTACGCTCGCGTAGTACGGCCCAGCTTCAACACTACATTTCCGTCACGTA
AATATACTACATGAATTCTCTACCTGTATAAAAGATCCCGCCTAAAACAA
GAACTCATTTGCTTATATCTGGCTTGTTTATGTTCCTAAAAATACACTGA
ATTTGAAAAAAACAAACAAAACAAAGCTTTCAACAGTCAGGCACATCCTG
GCAAATGAACGGGGTGAGCATTTGCATAGGGTATTCATCACCCAGTTTAA
ATGAGAGGACGTCTCAGGCTAAAAGTGTGAAAATGAATAAAAATGAACTT
CAAACTGAAAAAGGGAAAAAAGGAAGAAAACTGGGAACTTTATTTTTTCA
TTAAAAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGAGATGTTTTGATTTTCCAAAGCACACG
AAAATATAAAAGAGGTCTGTGTACAAGCGTGCTCATTTTGAAACGTTACG
TAATCAAGCCTGGTTTCTATTACTTACACTGGCACTTGGCTTGATTGCGG
GGCCAGGACGTTGTGTAAGGATACATATAGACGACGTATATTTCATTATA
TTATATATTACATGATAAGAATACAAATAGACAACGTATATTACAATCAT
TATGTATTACATGACACCTTGCTCCTATTCTAGTAAAGATAATATATGTT
GTCAAAGAGTACACTTAAATGAAGAGCTATCCGATTGCGGCCCTTCCGTA
AATAAACATCCGGACTTATAGGTGGTAAAGAGGGCGTTGATAGTTGCCGC
CTCATAGATTCGATGTTTGTTATTCAAATTAGTGCTACCACATCCGCCCT
TTTTTCAAATTCGCGCCATTTTTACAATTTAGTCTGTTTGTTTCTTGATG
GAAACCAGTACAAGTTGTTTCGTATTTTTCCCGCACAAGTCACTTTTATT
ACAAAACTGTTATCGTTTTAAACTTGAGCAACTGATCCAGAATAAAAGGT
AATTATTTTTACAACTCGCACTTTTTAATTACATTAATTGACATCTTGAC
ATTACAGCTATCTTGTTAGATGTTTTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTGGAGAGGGAATGT
TTGTAAACATAGAATTTTTTTTCATAACAGTTATTTGGGGGGTCGGAATT
AGGCTGGGCTGTCGGCTTTAGGACCTCTCACGACCCTCCAGTATAGACCT
AACTCTTCATACAAAAGTTACGGGAAATGCATATTTGGACTTTGTACACT
ATGCTGCACGCCAGCATTTAAGCTGAAGTCCCACAAAAGCCGGACAAAAA
TCAGTTTTTTGCAGTTTGCAAAAAAACACCACATAGAAGATCTTTCAAAT
TCAGTATGTGGATAGAGCAGTAAAAAACACAACTTTTCTATTTTTCCTTT
TTTTTGCAAAAGTTCTAAGAATGATAAGGATAATGATAATTGAATACTAT
CCACTGATAATCTGCGGCGCTATCGTAAAGCTAGAATCGCTTCGCGTACT
CTTCGCTTGAGAAAACGATCGACGGATTAAATTTTTCACCCGCGCGGGAG
TTTGCAGGCGTTCTGCAAGCATTCTGCGAGCGTTCTCGGCTCAATCCTCA
GCTCAATCCTCAAACAGTGTTAAAATGGTAGACTCAGCTGTGACAGATAT
TATTTCGATGGAAGTTGTTGGAATGTTTGCAAGACTCTTGACAGAAAATC
TTTTGTTTTATTGTCAATGATGACAGTTGACAGTGCTGTTATTAATTTTG
ATAGATCTGATATATTGATGTTTGTAAGTGCACTTTATAGTTTTGAACCC
CATTGAAGAATCATATTCTGGTTTTCATGTTATTAGATGCTGTTTTAGAG
CTTTAGAGCTAGCCTGCCCTCGACATGGCCCGAGAATTCTCGGACCAAAA
CTTTTATTGGAATTCGCGTAAAGCCCGAGTATGGCCCGAGCTGGCCCGAG
AATTCGGGCCGTGTTCGGGCCACACGCGGGCCACGCACGGGCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATG
AAAACATAGTTACAAATATACTTAGGGTGGAAATATTTGCTAGTAAACTG
GTCCTGGTTTTAAACTGAAGCGTGTCCACGCATTGAGTTTAAAGCCTGAA
GGGCTAGAGTTCAATCTCTGATATGATACACAAATGTAACCTTTCTCAGG
TAAGAAAAAGTGAAGCCTTAAAAAATGCGCCGCATCTTTGACGACAGATT
GAATCTAGCAATTCCTTTGTTTATGATTGATATTTTTTTTGAAATTTAGC
GGTAAATTTTAGTTTCAATGTGTCATTTGTGTAAAACCCAGGCGAGCCGC
TCAAGGCCGCGCAATTTTTGTAGGATTTGTTGGCTTCAAATCCTACCAAA
AAGATTGACTTCTAGCCCTTCGGGCTTCTACTTCATTGTGTCCACGGGAA
GCTCGTAAAGTTTTTTTGAGCGATATAAACAAAACAGACAAATCTTATTT
TGTACTATTTTGTTTGACTGGACATGCTGAATCAATTTAAATATGGAATC
TCCTGACATGGCCCGAACATGGCCCAAATGACTCGGGTCATGCTCGGGCC
AAAAGAATTGATAGGGTCTCTCGGCCCGAACATGGCCCAAAGAGGCCCGA
GAATTCTCGGGCCATGTCGAGGGTCGTGTTACATCAATATGCCAAAAACA
TTTTGTTCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACTTC
CTTTTATAGGTGAACCATATTCATGTGGCTTTCAGCCTTGCACTCCATCG
CAGAGGCTAATCAATTTTAATGACTTTTTTGACTAATGATCAAGTTAAAA
NTTGCACTCCATTGTTTTGCATATGCATTAATGTGACTACTGCTGGAGTT
TTTTTATTATTCAACAGGACATCCCGACTAGCAAAAGGTCTATCAGATGT
TTACTCAACCCCAAAACTTCTATATGGCCATCTTCAAGCCCTTAAAAAGT
CTCACATTAGCTAAAAATCTTAAAAATCTTAGTTTAAACAGCCTTCAGCC
ACCCAGAAAATAGATACCTTATCACTATTAAATAATAGAAATCTTGAGAA
ATGTTGGCGAGGTTCAGCAGAAAATCATTACATAGTTTCTAGAGGGGTCA
AGACCCCCCCCCCTTAGGTAAGAGGACCCCCCCTTAAGTGATAACCCCCC
CTTAGGAAATTAATTTAAAATTTCACACCCCCCCCTTAGAAAATCAGTAT
AAATGAAATGATTGTACAAGAGTCATAATTCAAGGAAGATCCCCCCTTAT
CTAAGAAGACCCCTTAGGTAAGAAGAACCCCCCTTAACTGGTAACCCCCC
CTTAGGAAAGTCAAACTTTTAACACCCCCCTTGCTTTTGGTTTATCAAAA
CCCAAGACCCCCCCCCCTACATTTAGGGGGAAGAAACTATGCATTACCAC
CTATTCCTTATGTCTCAAAAATTGTTTAAACTGGTTTAAAGTGCCTGAAA
ATTTGCAAAATTGATAACAGACCCCCTAAAATTCTTGAAAATCTGGTCAC
TTTACAAGGGATTTACAGAGGCTACTGACAACTTCAGAGCTACACAGTGA
TAAAAGCTGAGATTTTTTTCATTCTTTGGGTAAAAAACAGTACTCTTCCA
TGATTTTCAAAACATAGATTTTTTTGAATTTTCTTACATGCTGTGAACAT
TCAGAAAATCAAAAGAAACCCATATGTGATTTTAGTTGTAATTTGAAATA
TTTTCTCTCATATTCAAATTTTTACGCCAAAAGCCAAAACTTAACAAGCC
CTCAAGTTGCCATTATTGATTTTAATAAGACCTAAAATTTTGGGATTCTG
AGTTTTTCACTATTATTTACCAAATACCACCTGATTTCTTAAAGAATATG
GTATTAGATGCTATAAAAACTGTGTTGATTAAAGATAATCAAGGCTCGAA
TGCTAATTATTTTTTGTCTTTTCAAATATTATATAGCAATCATCTACTTT
GGATTGATGTTGGTTATGAACAATTTCTCAAACACCTGTGGAAAATATCA
AATATCCTTTGGAAGATCTCAGCAGCAGCATGATAATCCATGATCCAATT
GGAAAGTATCTTGCGAGAAAAATGGAGCAATCTAATTCAATCAACAATGG
GTATGTATATTTCTCTTTATGTAAAAGACCAGCTTGTATACAAGAGTTTC
TTTAAAACATTGTTAATTTTGAATAATCTCTGTCTGGGATGACTACTCAA
AAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013278	XLOC_013278	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023650-exon-sc0000457-1575043694:133310..133448	TCONS_00023650-exon-sc0000457-1575043694:133310..133448	Clytia hemisphaerica	exon
TCONS_00023650-exon-sc0000457-1575043694:126346..126612	TCONS_00023650-exon-sc0000457-1575043694:126346..126612	Clytia hemisphaerica	exon
TCONS_00023650-exon-sc0000457-1510915933:133310..133448	TCONS_00023650-exon-sc0000457-1510915933:133310..133448	Clytia hemisphaerica	exon
TCONS_00023650-exon-sc0000457-1510915933:126346..126612	TCONS_00023650-exon-sc0000457-1510915933:126346..126612	Clytia hemisphaerica	exon
TCONS_00023650-exon-sc0000457-1491911889:133310..133448	TCONS_00023650-exon-sc0000457-1491911889:133310..133448	Clytia hemisphaerica	exon
TCONS_00023650-exon-sc0000457-1491911889:126346..126612	TCONS_00023650-exon-sc0000457-1491911889:126346..126612	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000457	supercontig	sc0000457:126346..133448 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29784	2.21271	0.611719	0.711912	5.82868	4.79781	1.38921	1.95084	3.18693	2.41241	0.912277	3.57609	2.87453	3.60716	3.0085	3.60452	4.05579	3.83413	3.25365	3.20508	2.43597	3.82186	1.36429	1.86094	0.966774	2.76103	1.48164	1.3177	1.99879	0.814609

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023650 vs. Swiss-Prot (Human)

BLAST of TCONS_00023650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023650 (transcript) - C. hemisphaerica