|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023635 ID=TCONS_00023635|Name=TCONS_00023635|organism=Clytia hemisphaerica|type=transcript|length=3191bp
GTCAAATCTGATCTGATCTTTCCAAAAGAACCACTTATGAATAATGAGGG
TCTGTCCCAACTTTTTATCGAGTGATAATCTGGTAATCTTTCCTCTTTCT
GGATTTTTTTCTGTAAGCATCTTTTGCTTTGATTAAAGAAAGTGCTCAAG
TCAGCAATTTCAATTTGACATGGAATTAATATTTCCGTCACTCTCCAATA
GAAGGAATAGGGGTTAATCTTGACTTGGACAAATCGTGAAAAAGTAGCCC
AAAATACTACCAACAGTCGACATTTATTTACCCACCCCTCTCACTTTGAG
ATGATCGATTTTTTGCCGAACATGTTTTAGGGGATGTAGATTTGTCTTAT
AAGTTATAAGTTGCTTATAAACCAGAAATATTGTAAAATTGATTTTCCAT
CGCTCGTCAAAGGGTTGTTTGTTTACAAACACATTTGATGTCAATCTaat
taaaagtaaaaacaaaaagtttcaatGTCTCATATTTCACAATAATATTG
AATGTCTTTAAAAGTCACCGATCCTTCTACCTAAGCACTCACACAACACT
TGGCTTTCTGTGTTGGTCTGCACAAAAATAAAACTGTATCTGTGgataaa
gaaagaaagagaaagcaTACTCTACTTTAACCATCacaaaaaattgcttt
taaatTCTTGAACAGACgatcaaaatgaaatttacGGCAGTGTTCTTTCT
ATGTTTACTGTTGTTTGTAGAAAGCAGCTCGGCCCAGCATCAAGTGCGCT
TTGGTCCAGATGGCAAAGCATACCCGAAAATGAAACACGTTCcagcaaat
tataaaaaagatatCAGTGCAACACAATTTGGTGTAGATGGGAAAGCAAG
ACCGGTCGATTCTCGCATTCCATTGGTCCATCACGATGAAAGAGAGGTTT
CTATGGATGATGTGCTGAACTCCGTCAAAATTTTAGTCGACAAATTGACC
GCCAAAagagatgaagaaaaaaaacaagaacagCAGAAGAAAGAGttcac
TTTTGAGAGTGTCCACAaggaaaacaataaaaaagaaacttCAAACGATA
ACAATGTTTATGAAGAATATGAAGCActcaagaaaaagtttttcgacACT
TTCGATAAAAGTCATAACGAAAAACGACAAACGCTCATCGGATCCGGTAA
AGATAACCATGTCGAATCCGGTTCTCCACAATCGGGACTTCCAAGTAAAC
CCGATCACCCGACTTTGATTGGATCGGGGAAAGACAATAAACGGGCAAAA
CTTCGATCTCATTTAAACGATTTATATGACGAATTACGAAAGGAAACGAC
CGAAAGACTTGACCGGGAACGAGAATTAAACGAGAAAAAACGGCTGGATT
TTGTGAAGAAGGATTTGGTGGATTTGTTGAACGGACTTCAATCAAAAGAC
ACTTTTACTTTTCACGATGGAAAATTCGGTCTTGATGAGAAGATGATTAA
CTCAGTTGAGGAGACCGTGCGTGAAAATAAAATTGCTCGCGCGGCCAAAA
CAACCGAACAGGAAAGTAAACGTTCCAAGCTAGAAGTCGTTCAATCGTTA
GTGAAGGAGTTACATGAActagaggaaaataaaaaacgagaagaaatgaa
gaaaaaagaggaGGAAGAAAGGACAAGATCTGTCGAACgaatggagaaaa
tttttatgGGTGTTTTGAAGAGAGAAATGGAGAAACGAAAAACGGCCGCT
GCACAAGAAAAAGAAGCCGCGCGAATAGAAGAAGAGAAAAAATGGGCTGC
CGTGCAAGCTACGTTGGAAGCTGATGCACTTAAGAAAAGAGAAAACGAAT
TAAATACAGGGCGAGATATGTTGCTAAAGATTATGGGTGATCTTGAAAAA
CGAGTTGCTAATAAAGAGAAGAAAGAAAGCGCATCTACAGTTAAGGATGT
CAAGAAAAGCGCAAGTAGCGATTCTATTGAGAAAGAATTAGATAACATCA
TTTCTTCTTTCTCAaggaaaattcaaaagaaagacATTCATGAAAGCGAA
ATCGATAAAGCATTCGAAGGATTCAACATTGatcaaaataaagtgaaaaa
caGCAGACCATAGACATAGATGGAAATTTTAATTGATACACaggactttt
ccagaaaaaatattgaatagggggggggggtgatgttgtaacattttttg
gaaatttatccCCCGGACATTGTAACTTTTGACCACCCGGATAGCAGGTC
TAACCCTCAGTTGACCctctggacattcaaaattactgTCACACAGAGAa
caattacccccaaacagagcaggTCTACCGCCCGGACACTATATTCTCTT
CCCcacatgtacgaacattttctggaagagctcaTTTGGCTTGACTAACT
TTTATTGTGGTTAATATAGGCCTTTCAAAATTTGGGTTTTTTCTGTGTCT
CTAAATACAGTTTTTTAGGAAGATCTAAATTCAGCTTTCTTGGGGGAACC
TTTAGGTTGTTTGTTGTTATATAGggaatattttgtaaatatctatattg
aatattttcagAAGAAATTGGGTTAAAGTTTGTACTTCTAGACCATGGTA
GAGTTTTTGTATTGTTTTTCTATTAACTTTCTTATATGATCTCTTCGTTT
GTATAGAGTTTCCTAGATAAAATACTTGACCGTTCGAAGTTTTGCTGCCA
GTGTATAGTGACGTGTATAAGTAAATTTGAAGACGAACTTTTCTTTTCGA
CTATTCCGAGGTTATTTTTACACAAATTTGATATAAACTTGTACTTTGGa
tatttttgatactttttttttgtaaaaattcatCACAGTaataacaaaca
tcaatatttttatattattttataaacatacaaactttttagaaatattt
ttcagaaaataagaGCTTAAGTTCACGAGTAGACACAATTTTAAAGTTTC
atggtttttcattttcatccaaaaatTCTTCAGTGTCGAGAGTATgagag
agcagatttttatgacacagtaattcataatgtaaaaagataattactat
gtctaaaaaatctgctctcctacacaaattttgcgcccttcctgtctacg
ctactgaattgaattctttttcaaatgataatgcacagatttttcacaaa
ttttgcgcccgtcctgtctacgctactgcaaTTACTCCCCATCCGGCTAA
AACGAATAACGAAACACAGTAAGCATGATATTATTTcaaac Run BLAST on NCBI transcript from alignment at sc0000457:66259..70170- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023635 ID=TCONS_00023635|Name=TCONS_00023635|organism=Clytia hemisphaerica|type=transcript|length=3912bp|location=Sequence derived from alignment at sc0000457:66259..70170- (Clytia hemisphaerica)
GTCAAATCTGATCTGATCTTTCCAAAAGAACCACTTATGAATAATGAGGG
TCTGTCCCAACTTTTTATCGAGTGATAATCTGGTAATCTTTCCTCTTTCT
GGATTTTTTTCTGTAAGCATCTTTTGCTTTGATTAAAGAAAGTGCTCAAG
TCAGCAATTTCAATTTGACATGGAATTAATATTTCCGTCACTCTCCAATA
GAAGGAATAGGGGTTAATCTTGACTTGGACAAATCGTGAAAAAGTAGCCC
AAAATACTACCAACAGTCGACATTTATTTACCCACCCCTCTCACTTTGAG
ATGATCGATTTTTTGCCGAACATGTTTTAGGGGATGTAGATTTGTCTTAT
AAGTTATAAGTTGCTTATAAACCAGAAATATTGTAAAATTGATTTTCCAT
CGCTCGTCAAAGGGTTGTTTGTTTACAAACACATTTGATGTCAATCTAAT
TAAAAGTAAAAACAAAAAGTTTCAATGTCTCATATTTCACAATAATATTG
AATGTCTTTAAAAGTCACCGATCCTTCTACCTAAGCACTCACACAACACT
TGGCTTTCTGTGTTGGTCTGCACAAAAATAAAACTGTATCTGTGGATAAA
GAAAGAAAGAGAAAGCATACTCTACTTTAACCATCACAAAAAATTGCTTT
TAAATTCTTGAACAGACGATCAAAATGAAATTTACGGCAGTGTTCTTTCT
ATGTTTACTGTTGTTTGTAGAAAGCAGCTCGGCCCAGCATCAAGTGCGCT
TTGGTCCAGATGGCAAAGCATACCCGAAAATGAAACACGTTCCAGCAAAT
TATAAAAAAGATATCAGTGCAACACAATTTGGTGTAGATGGGAAAGCAAG
ACCGGTCGATTCTCGCATTCCATTGGTCCATCACGATGAAAGAGAGGTTT
CTATGGATGATGTGCTGAACTCCGTCAAAATTTTAGTCGACAAATTGACC
GCCAAAAGAGATGAAGAAAAAAAACAAGAACAGCAGAAGAAAGAGGTAAA
ATCACTTTCACTTTTCGAGCTCCCTCAGTTTTTGCCACTTTGCGCTCGTA
TGATGGAGAAATATCGATACCTTCTATCATTACTTTACTCAAAACTTACC
GTACTAATGTCTTTACTTTGTGAATATGTTACATTCAATTTTCATCTAAT
TTTTTGCTTTGGCTGAGATTTACACATATTACATCCATTCAAGAAAATCA
AGAAAGAAATACTAAAGTTTCTTGCCTTGTACTAAGAAAACTCTCCCTAA
AGAGCGGTAGGGTTGCTGATTCTGAAAGTACACTCTTATTTTCTTATAAG
CATGACGTTTATAAGCATACTTAGGCTCAAATTTGACAAAAAATAAGCAT
ACCTCCAAGCTGAAAATGCAAAAAAATTCGTGCAGCTTTTCTCATAAAAC
ACAGACCTTTTCAAAGTTACTTTTAAAGCTGTTTGAGCTTTCTTGGACCA
AAGATTTTCACCTGCGGCGCCAAATTTTAAAGAAAACTTTCATTCTTTGA
GTCGAATCATTGTTTCGACTTAAAAATACAAAATTTTCTTGAACCCAAAG
TATAAAAGTCTAAGCATATAAATAAGCATAAATTAAGGCTGAAAATGAGA
TTTTGCTATATATTTTGAGCCTCGACCCGATTTTTCCTGTATGCTTATGA
AACAAAAGAGTGTACTCTATTAACCATTGATTTATATTCTCATGTAACAA
TTCTTTTTTCTTTCAGTTCACTTTTGAGAGTGTCCACAAGGAAAACAATA
AAAAAGAAACTTCAAACGATAACAATGTTTATGAAGAATATGAAGCACTC
AAGAAAAAGTTTTTCGACACTTTCGATAAAAGTCATAACGAAAAACGACA
AACGCTCATCGGATCCGGTAAAGATAACCATGTCGAATCCGGTTCTCCAC
AATCGGGACTTCCAAGTAAACCCGATCACCCGACTTTGATTGGATCGGGG
AAAGACAATAAACGGGCAAAACTTCGATCTCATTTAAACGATTTATATGA
CGAATTACGAAAGGAAACGACCGAAAGACTTGACCGGGAACGAGAATTAA
ACGAGAAAAAACGGCTGGATTTTGTGAAGAAGGATTTGGTGGATTTGTTG
AACGGACTTCAATCAAAAGACACTTTTACTTTTCACGATGGAAAATTCGG
TCTTGATGAGAAGATGATTAACTCAGTTGAGGAGACCGTGCGTGAAAATA
AAATTGCTCGCGCGGCCAAAACAACCGAACAGGAAAGTAAACGTTCCAAG
CTAGAAGTCGTTCAATCGTTAGTGAAGGAGTTACATGAACTAGAGGAAAA
TAAAAAACGAGAAGAAATGAAGAAAAAAGAGGAGGAAGAAAGGACAAGAT
CTGTCGAACGAATGGAGAAAATTTTTATGGGTGTTTTGAAGAGAGAAATG
GAGAAACGAAAAACGGCCGCTGCACAAGAAAAAGAAGCCGCGCGAATAGA
AGAAGAGAAAAAATGGGCTGCCGTGCAAGCTACGTTGGAAGCTGATGCAC
TTAAGAAAAGAGAAAACGAATTAAATACAGGGCGAGATATGTTGCTAAAG
ATTATGGGTGATCTTGAAAAACGAGTTGCTAATAAAGAGAAGAAAGAAAG
CGCATCTACAGTTAAGGATGTCAAGAAAAGCGCAAGTAGCGATTCTATTG
AGAAAGAATTAGATAACATCATTTCTTCTTTCTCAAGGAAAATTCAAAAG
AAAGACATTCATGAAAGCGAAATCGATAAAGCATTCGAAGGATTCAACAT
TGATCAAAATAAAGTGAAAAACAGCAGACCATAGACATAGATGGAAATTT
TAATTGATACACAGGACTTTTCCAGAAAAAATATTGAATAGGGGGGGGGG
GTGATGTTGTAACATTTTTTGGAAATTTATCCCCCGGACATTGTAACTTT
TGACCACCCGGATAGCAGGTCTAACCCTCAGTTGACCCTCTGGACATTCA
AAATTACTGTCACACAGAGAACAATTACCCCCAAACAGAGCAGGTCTACC
GCCCGGACACTATATTCTCTTCCCCACATGTACGAACATTTTCTGGAAGA
GCTCATTTGGCTTGACTAACTTTTATTGTGGTTAATATAGGCCTTTCAAA
ATTTGGGTTTTTTCTGTGTCTCTAAATACAGTTTTTTAGGAAGATCTAAA
TTCAGCTTTCTTGGGGGAACCTTTAGGTTGTTTGTTGTTATATAGGGAAT
ATTTTGTAAATATCTATATTGAATATTTTCAGAAGAAATTGGGTTAAAGT
TTGTACTTCTAGACCATGGTAGAGTTTTTGTATTGTTTTTCTATTAACTT
TCTTATATGATCTCTTCGTTTGTATAGAGTTTCCTAGATAAAATACTTGA
CCGTTCGAAGTTTTGCTGCCAGTGTATAGTGACGTGTATAAGTAAATTTG
AAGACGAACTTTTCTTTTCGACTATTCCGAGGTTATTTTTACACAAATTT
GATATAAACTTGTACTTTGGATATTTTTGATACTTTTTTTTTGTAAAAAT
TCATCACAGTAATAACAAACATCAATATTTTTATATTATTTTATAAACAT
ACAAACTTTTTAGAAATATTTTTCAGAAAATAAGAGCTTAAGTTCACGAG
TAGACACAATTTTAAAGTTTCATGGTTTTTCATTTTCATCCAAAAATTCT
TCAGTGTCGAGAGTATGAGAGAGCAGATTTTTATGACACAGTAATTCATA
ATGTAAAAAGATAATTACTATGTCTAAAAAATCTGCTCTCCTACACAAAT
TTTGCGCCCTTCCTGTCTACGCTACTGAATTGAATTCTTTTTCAAATGAT
AATGCACAGATTTTTCACAAATTTTGCGCCCGTCCTGTCTACGCTACTGC
AATTACTCCCCATCCGGCTAAAACGAATAACGAAACACAGTAAGCATGAT
ATTATTTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023635-exon-sc0000457-1575043694:69176..70170 | TCONS_00023635-exon-sc0000457-1575043694:69176..70170 | Clytia hemisphaerica | exon |
| TCONS_00023635-exon-sc0000457-1575043694:66259..68454 | TCONS_00023635-exon-sc0000457-1575043694:66259..68454 | Clytia hemisphaerica | exon |
| TCONS_00023635-exon-sc0000457-1510915933:69176..70170 | TCONS_00023635-exon-sc0000457-1510915933:69176..70170 | Clytia hemisphaerica | exon |
| TCONS_00023635-exon-sc0000457-1510915933:66259..68454 | TCONS_00023635-exon-sc0000457-1510915933:66259..68454 | Clytia hemisphaerica | exon |
| TCONS_00023635-exon-sc0000457-1491911889:69176..70170 | TCONS_00023635-exon-sc0000457-1491911889:69176..70170 | Clytia hemisphaerica | exon |
| TCONS_00023635-exon-sc0000457-1491911889:66259..68454 | TCONS_00023635-exon-sc0000457-1491911889:66259..68454 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000457 | supercontig | sc0000457:66259..70170 - |
Blast
The following BLAST results are available for this feature:
|
