TCONS_00023607 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023607
Unique Name	TCONS_00023607
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	973

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000457:133740..140021+

transcript sequence

>TCONS_00023607 ID=TCONS_00023607|Name=TCONS_00023607|organism=Clytia hemisphaerica|type=transcript|length=973bp
CGCGAAAATGACCTGCTCAAGAAAATCTCGGGATTCAAAATAAAACTCAC
AAGCtggtcatttttttttttaattctagaaATTGGTGCTTGGAGAGGTT
TACTTAATAAAGAACACCCTCAAGATGTCAGGCAAGGACAGAATCAATGT
GTTTCCATCTAGAATGGCAATGACAACAATGAAACAGAGGTTAAAAGGAG
CACAAAAAGGACACAgtttattgaagaaaaaatctgATGCTTTGACAATG
agattcagaaaaattttaaagactATCATTGATACAAAAGTTATGATGGG
AGACGTGATGAAAGAAGCGTCATTTTCTTTGACAGAAGCTTACTTTGCAG
CTGGCGATTTCagCTTGGTGATCACTGAAAATGTAGATAAAGCATGGACA
AAAGTGAGAACAAAAAATGACAATGTAGCCGGTGTAAAACTACCAGTATT
TGAAGCTTACACTGATGGGGCAAACACTTATGAGCTGACTGGATTGTCTC
GTGGAGGACAACAAGTGAACAACTGTGCCACCACATTCAACAAAGCACTG
AAATTGCTGGTGGAATTGGCTTCTCTTCAGACTGCTTTCGTAACATTGGA
TGAGGCAATCAAAATTACCAACAGAAGAGTCAATGCTATTGAACACGTCA
TTATCCCACGAATTGAGAGGACCATTGCATACATCACTAGTGAATTGGAT
GAAATGGAAAGAGAAGAATTTTATCGgttgaaaaaaattcaagagaagaa
gaagaaaaacaaagcaGTGAAAGAGGAAGCCTTGAAACAATATCAATTAG
ATCATCAGCATGAAAAAGTTAAAGATACAGAACCAAAGAATATTTTAGCA
GATAATGAGGACGATGAAGACCTCTTGTTCACATAATGAAATGATGGGCT
TTGATGAATCAAATatgttttaatttaaattttttatgacttaatttatg
aatttttttcccttttATCATGC

Run BLAST on NCBI

transcript from alignment at sc0000457:133740..140021+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023607 ID=TCONS_00023607|Name=TCONS_00023607|organism=Clytia hemisphaerica|type=transcript|length=6282bp|location=Sequence derived from alignment at sc0000457:133740..140021+ (Clytia hemisphaerica)
CGCGAAAATGACCTGCTCAAGAAAATCTCGGGATTCAAAATAAAACTCAC
AAGCtggtcatttttttttttaattctagaaATTGGTGCTTGGAGAGGTT
TACTTAATAAAGAACACCCTCAAGATGTCAGGCAAGGACAGAATCAATGT
GTTTCCATCTAGAATGTAAGATTTTTCTCCTATTTTCTACTAAACTTGCA
TAACAAATATGAAAGCTTTTCTTTAGTAGAAGAATAAAGAAAATTCAACT
CCTGANGTAAGATTTTTCTCCTATTTTCTACTAAACTTGCATAACAAATA
TGAAAGCTTTTCTTTCGTAAAAGAAAATTCAACTCCTGAATTCTCGAACa
atttaccgtcaactgctctaaaacttgggacgattggtcaaatcTTGGGA
TGGTTGATTTCTGGgctgtattttcacttaactGTTTAAATCTCTTTTGA
CAACAAGTTTGATTTGGTACttcaaccaagtttatcaatcaaactttcac
tATCTCTCATAATCACAATTGTCAATTGGTAGGGGGgtcagtcgaaattt
caaaatcattttcaaaatgtcaaaccaagtttaatgaaaagcccatatcc
tcagaaaaaaaatgaggggtcacttatCTTTCAACCTttagtcagttagt
cacactagcctCCCGCcaaaaaatgcgtatcaaagattaatgctgcaaaa
gcgctacatcgtttacttgactctcaagcaaaaaaaatgtggcgcaaaac
ttctaaaaatattcatgaaaaaataacccggcgcttttatcaataaaaaa
tttattcgaataaaaaatcaaagcgctgtctcgggaattgaatgacaaat
tttggttggttgattttggctgctgcacatttattttatttcaaactttc
aagttttaattaattgtcttgcgaacttgattcaggtaactctcatcctt
gttgtgcaaatacatcctgtagatgactgatgttgttttttctgaaagct
agatttcctagtgtgactaactgttagtagtttttcagatattccatttt
gaagttccattttttgaagattcctgttcaaaaaaacaaaaacctccTAC
CATCTCGTAACATGTCCACGgcactgaaatcgaaagtgtttcacaaaaaa
atctACGCAGGAAGTTTGGGGCGAGAGTGTTTTTCCGTAGTGCGAGCCAT
AGAGACGGGGGTCACTATACCATTAAACTTCCCTTACAATGGAGCAAATA
TAGATACACAAAAGATAATTGCACAGCATGAAAGAGGAAAGTCTAAGCTC
TCTGCTGTTACCTTTCGCAACATAAAAATTTGACGGATTCTTTGATTTAC
ATTTGCTGGAAGACAATGCACGACCCCACAGAACGAACGGTTTCAAAAGA
AAGCTTGATCTACCATCTTTCAAACACAAAAAACCATTTGTTACGGGACC
GATCTGCTCCTTCGTGATCTTAATAAAAGTAACCATGGTTTTTCCAAATT
TGCGGTGCTGTAATCTTGTTCACAACAAATAGGGCAACCCAAGCTCTGAA
AATCGAAGATTACAAATCAACGAAGAATGTTAAAGACTTCTGGTTTTTTG
CACTGTAAAGGTGAataaattcttttcattttggaaCAAAAAATCATGCA
GATATCTTTCTTTATCATTTAGATATTTAATTCTAAATTTTATTGTTATC
CTTTTTTTGTTGCCGTGTCTTTTGTCACGCGGGAAAATACGCGacttggg
taacttgcatcagtggaggttaacatgcatagccctcaaatgaatgacct
ggctggtcattaaaatctCTAGAGACTTTCTTCCAGCGTGCACGTGCTTA
TTATTTGCTATCTATGATTCGTGCAGATTCGTGGTGTGTTAATTTTAAAT
GACCTTGGAGGTTTGATAAATTGGTGGCcaaatggccgtcccatgttaga
gcagttgacggtaaattGTTCGAGACGAGAATTCAGGAATTGAATTTTGT
TTAGACGGCAATctcaaatatcttcattttgcgtCATGTACATTGataag
taatccctgagagaagattttatagaaatctgcaacaaaaatgaaagtgg
tctcttctactgattgcttcatagcgctccttcgcagctatttatcaaat
ttccaccaatgaggttgccgcatttcaaacggcccttctttttggcaccc
gtggcctttcAGTGGCTTGCACAACgagcggctgtaaaatcccacccttc
atatatttgtttcaattcgtgatccgtggcttaggttttttctcatcttc
aatttactgaagaaagcgggaatttgatgtgagagttagattgtcaacaa
agtgccattattGAACAAAAGAAGATTCATTAATTgaaataggggatttg
gaaaattttctgtgattagttttttgcacaaacccctgtaactatggacG
AGCACCCCGTtactaagatgttggcttgaaatcgaaaatgaaaccactca
aaacgaaagtaaaatcagcccgtactcgaaatcccgtaatcttgatatat
gAGTTTAAGTCTACACTGCCTGGGATATTTGATCTTCTCACATCTAAAAC
TTGCTCAAAATTTGCTATATTTTCTAgttttatgattaaaaagattAGTA
TTGCTGGTACTTCTAAGGCGAATGTGCTTAAACCTGGCCTAATGAAATCA
GGTGTTACTGGTTAGAATGGTGATGCCCCTCTCATCTTGAAAATCTTTGA
CTTTTTGCCCAATATCTTACTCTATAATCTTCTCCTAAAGCCAATACGTA
AAAAGTAATCACTATTTCCAGGCTGGGTTCTGGCCTACAAAATCGAGGAA
TGTAAAATTGTCGATTAACGGTAGTTCTTAGTTAGTCAATATAAAATTGT
CCTAGATAGACAAAATACCGTCTCCCTTGCAGAAAAACAGAGATATATAA
ACTTTCTATTATTGTAGTCTAGCCaggagaaaaattacaaaaaataaggG
GAAAcaagaaatgttgaaatttaattgttttcttggttttcttcttttta
ttgatttcaCTTTATTAATGTCATTATAGGGCAATGACAACAATGAAACA
GAGGTTAAAAGGAGCACAAAAAGGACACAgtttattgaagaaaaaatctg
ATGCTTTGACAATGagattcagaaaaattttaaagactATCATTGATGTA
AGTATCTTACCCTATTTACAATACAATGTCCTTTTTGATTTTAGATAATA
ATAAATTGGCTGCAAATAAAACTAACAAGATTTATTTGTCGTattttgta
aattctggttTGGCAATACTTCAAACATTCCCTGAACTGTTTGATTTTCT
GTGGAAAAAGATGAAATATGTAtgttgaaaaaatatgttttgccTTTTTC
ATAAGTTGCCTTAGTTCTTTTCTTTTTAGACAGAAGgaataaaaacgtaa
aaaacccTGGGATTCCACTCTAGCTCTGCTTTTAAACATCAACTCTgcta
aaaattgttttaaaaaacaaCATCCCAAGCCAATGATGTAGTAATAATTT
TGTATTATAAACTTGTTTCTATCATATTTGATTTATTTAACCCCTCTACT
TAGACAAAAGTTATGATGGGAGACGTGATGAAAGAAGCGTCATTTTCTTT
GACAGAAGCTTACTTTGCAGCTGGCGATTTCaggtttgattttattttaa
acCTTTTCCTAATATTTCATCATAGACTTGGTGAGAACATAACACTTCCC
AAAGATTGATTATTGAGTTATTTGAGTTAACTTTAATATTGAGTTATTca
agttaacttttattttagtaagtagaAAACAATGTCACAAATGAATTACC
ATGCAAAAGAATATGAAGAATAACCATGTAGTTAGTATTTGAATTCCTGT
TTTTGACACCttctttttaaattctcaaGATAAAACGTTATGAGAATATG
CAAATTTCCCTACAACCTTTTAGCTTGGTTATCACTGAAAATGTAGATAN
AGAATATGCAAATTTCCCTACAACCTTTTAGCTTGGTGATCACTGAAAAT
GTAGATAAAGCATGGACAAAAGTGAGAACAAAAAATGACAATGTAGCCGG
TAAAATTTAATTATGTGTTTTGtggtcttttgatttctttcatgatgtgt
ttttttaatatttagccTTACTGTACATTCGGTTTGAAAAAAGGGATGGA
AAAGCAATAAAAACGgatgatttgaattttttattattcAGGTGTAAAAC
TACCAGTATTTGAAGCTTACACTGATGGGGCAAACAGTGAGTACTTTGTC
TAATCTAACTAATTCACCTATCAACCCTGAATGTATGAGGGGACTAGTTT
AGTGTTTACCTGATAGATCGATGTTAAAATTTTGTGTTATTGGAAAATCA
ATGCAACAAATTTAGACATCAGTTATCAATACTTCTAGGTGTACTCCAAC
CCAGACACCTCATGTTTTAAGGGTTAAAAGTGATAAAGTAAAATCAagtg
tatttaaaaaattctagaTAGATTGTCATAAATTTGTTTCAGGTAATTAT
ACTCATGACTTTGATTGTTTAATTCACCTGTTTGGGTTGATCAATAGTTT
AATTAATAGCTGTATCTCATATTTTCTAAGCTTATGAGCTGACTGGATTG
TCTCGTGGAGGACAACAAGTGAACAACTGTGCCACCACATTCAACAAAGC
ACTGAAATTGCTGGTGGAATTGGCTTCTCTTCAGGTTACCATACATAATT
CAatctttatgattttgtcatcaAATGCAGctttataatttgaaatataa
ctCGAACTGAAACACTTATTCCCTAAGCTTGAAAACTGTATAAAAGAGGT
TTGCCATAATcagaatctttctttaattgtTGAAGGAATTTCTTGGtcct
ttgaagatcgaattagagaagtCAACTAAAATACAATTTCATTTAGACTG
CTTTCGTAACATTGGATGAGGCAATCAAAATTACCAACAGAAGAGTCAAT
GCTATTGAACACGGTAATTGCTGTATCAAATTTGCATctatttaaaaata
catttaattagaagagaaaattttgattttagttttttgtatATTCATGA
TTCCTTATAAACTTTTTTGTAGTCATTATCCCACGAATTGAGAGGACCAT
TGCATACATCACTAGTGAATTGGATGAAATGGAAAGAGAAGAATTTTATC
GGTAAAAATTGTGTCCCCTAATTGAATCAGCTAAAATCTGTGGATCTTCA
TATTTTGAGTATTCAAAATGTCTTTGAGGCTGCTATTTTAATAgttttgt
attatttttatcAGTAATGACCAGAATGGCCAACCTCTTGGCAGTGAAAC
AGACCACCTCTTTTAACTTTGGCTGTCATTCTTTATCTACTGCTATGCAT
CTATTAAAGAGATAAGCAGTTAATTACAATTAACTAAGTATAAAGTAGAA
GCTGTTTTTTTAAGGGTATCAATGCCTACTCAGATTGGTATGTAtaatct
tttgattaaaattgtTGAATTGCTTACTTTCCCATTTATTTACAtaggtt
gaaaaaaattcaagagaagaagaagaaaaacaaagcaGTGAAAGAGGAAG
CCTTGAAACAATATCAATTAGATCATCAGCATGAAAAAGTTAAAGGTGAG
ATATACAATGTCAACACATGGCCTAATCCGAAGGTCAAGAAGATTAATTT
AAACAGATTTTACATGAATGATAGTTAATGCTAAAACTAAAAGAAGTTAA
TGCTTCCAAACCAAGAATTATATACATTTAATAAATCCCTAATTATTGCT
TTTAAATAAGCGAGTATTTTCTATGGGACACTCTGCAGAGGTTAATGACA
CTTTACTTAGATCATGACTATAGAGCTTGTTACAGCCTGACAATATTTTG
TGCATTCGAATCACTTCAAAGTGTTCACTTTTCCTGTTCATGTTTATTTG
CTATTTCCTTATCATCACTTATCATGAGTATTCTCGAAAAGGCTCAAATA
CTTGATCTTGTCTCTCTTGCCAGAAGTTTAACTTAGAAAATAAAGTGGAa
tcttttttgttgaaaattttctgatttcacTTTCAGGTTTCAGAAGTCAA
GCTTCAACATATTTCTTACTATATTTCTTTCAGATACAGAACCAAAGAAT
ATTTTAGCAGATAATGAGGACGATGAAGACCTCTTGTTCACATAATGAAA
TGATGGGCTTTGATGAATCAAATatgttttaatttaaattttttatgact
taatttatgaatttttttcccttttATCATGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013271	XLOC_013271	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000457	supercontig	sc0000457:133740..140021 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
288.266	289.59	179.135	142.934	126.325	111.161	159.441	164.966	208.094	187.505	162.864	167.224	116.576	97.7337	170.551	198.365	220.342	205.072	98.7299	147.754	149.381	135.613	230.558	217.788	113.248	98.3332	195.027	141.328	280.635	252.555

Blast

[Close]

BLAST of TCONS_00023607 vs. Swiss-Prot (Human)
Match: VATD (V-type proton ATPase subunit D OS=Homo sapiens GN=ATP6V1D PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 2.716e-107
Identity = 162/252 (64.29%), Postives = 196/252 (77.78%), Query Frame = 2

Query:  125 MSGKDRINVFPSRMAMTTMKQRLKGAQKGHSLLKKKSDALTMRFRKILKTIIDTKVMMGDVMKEASFSLTEAYFAAGDFSLVITENVDKAWTKVRTKNDNVAGVKLPVFEAYTDGANTYELTGLSRGGQQVNNCATTFNKALKLLVELASLQTAFVTLDEAIKITNRRVNAIEHVIIPRIERTIAYITSELDEMEREEFYRLXXXXXXXXXXXXXXXXXXXQYQLDHQHEKVKDTEPKNILADNEDDEDLLF 880
            MSGKDRI +FPSRMA T MK RLKGAQ G +LLKKKSDALT+RFR+ILK II+TK++MG+VM+EA+FSL EA F AGDFS  + +NV+KA  K+R K DNVAGV LPVFE Y +G ++YELTGL+RGG+Q+      + KA++LLVELASLQT+FVTLDEAIKITNRRVNAIEHVIIPRIERT+AYI +ELDE EREEFYRL     KK + K    +   +  L+ +    +  EP N+LA+ E DEDLLF
Sbjct:    1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRL-----KKIQEKKKILKEKSEKDLEQRRAAGEVLEPANLLAE-EKDEDLLF 246

The following BLAST results are available for this feature:

BLAST of TCONS_00023607 vs. Swiss-Prot (Human)

BLAST of TCONS_00023607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VATD	2.716e-107	64.29	V-type proton ATPase subunit D OS=Homo sapiens GN=...	[more]

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TCONS_00023607 (transcript) - C. hemisphaerica