TCONS_00023590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023590
Unique NameTCONS_00023590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023590 ID=TCONS_00023590|Name=TCONS_00023590|organism=Clytia hemisphaerica|type=transcript|length=1000bp
ccgggctcaaaacattcgaaaaaatcgcaaagtggaatagacgttaattg
cgtaaaaaaacgcgggtgacgtctagtataggctacgtCGCTCTCGGCAT
TTACagttttaaacgttttaaaataGGGATATTCTCAAGTTGATTCTCTG
TAACAAGATCCCAGTGAACACCGCCTGAGGGTTTTATCAACTTTTTACGG
ACATTTATAACACGAGTTGGCGTCACAATGATATCGACGGGTAAATCGTG
ACATTTCATAAGCGATATTGGTAGATCAGTCGGCGATAGAACTTGACTGT
CGTGAACGGTAGTAGCTACAATGGTATCTTTCGTCACCATACCATGCATA
TAAAATATCGCCCATTCAAGCTCAGCATAACCAAGACCTTTCCCTAAACG
TACACCGTTAGCTGAAACAACTGTTGAAGCCACTACATAAAGATCGATTT
TACTTTCCGAGTCTCTTGAGATTGATAGCTCAGTACCGAATTCCTTTGCC
CCAGCCTTACTTGAAGCTCTTTTGAATTGCcaaaactgttttaaattctt
tGGATCCACGACATACATAAACGCGTCTCCTAGCGCAGGGCTTGGAACAA
ACAAAGTCTTACCATTACGTAATGTTAAGAATCGAAGATGCATTTGAGCC
AAGGAAGGATTGATTTTAATGATTCGAGCAGATTGAAATTCACGCAATTT
ACTTAATTTTTCAGCAGCCTTACCAGAACCTTTGAAATTGGGGATTTTGT
TGAAGCAAGAAGGTGGATAGGGTTTGATGAGATCTTTTTCTTCCATTAGT
TTCCATATGTGTTGACGTTTCGATTCTTTTAACGCTCCTATATCCACTTC
TTTTGAACAATGGTCGGATGTTTTTGCTTTTCCTTGGTCTGCAGTACTGG
TCAAGTTATCAATAACGGAAAGACTCTGAAAAGTTGTGCATAATTCTTCG
GTCTTTTCTTCAGTTTCACTGcctgtttttttattgttcataTTTGTTtc
Run BLAST on NCBI

transcript from alignment at sc0000456:249382..251024-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023590 ID=TCONS_00023590|Name=TCONS_00023590|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at sc0000456:249382..251024- (Clytia hemisphaerica)
CCGGGCTCAAAACATTCGAAAAAATCGCAAAGTGGAATAGACGTTAATTG
CGTAAAAAAACGCGGGTGACGTCTAGTATAGGCTACGTCGCTCTCGGCAT
TTACAGTTTTAAACGTTTTAAAATAGGGATATTCTCAAGTTGATTCTCTG
TAACAAGATCCCAGTGAACACCGCCTGAGGGTTTTATCAACTTTTTACGG
ACATTTATAACACGAGTTGGCGTCACAATGATATCGACGGGTAAATCGTG
ACATTTCATAAGCGATATTGGTAGATCAGTCGGCGATAGAACTTGACTGT
CGTGAACGGTAGTAGCTACAATGGTATCTTTCGTCACCATACCATGCATA
TAAAATATCGCCCATTCAAGCTCAGCATAACCAAGACCTTTCCCTAAACG
TACACCGTTAGCTGAAACAACTGTTGAAGCCACTACATAAAGATCGATTT
TACTTTCCGAGTCTCTTGAGATTGATAGCTCAGTACCGAATTCCTTTGCC
CCAGCCTTACTTGAAGCTCTTTTGAATTGCCAAAACTGTTTTAAATTCTT
TGGATCCACGACATACATAAACGAGTCTCCTAGTGCAGGGCTTGGAACAA
ACAAAGTCTTACCATTACGTAATGTTAAGAATCGAAGATGCATTTGAGCC
AAGGAAGGATTGATTTTAATGATTCGAGCAGATTGAAATTCACGCAATTT
ACTTAATTTTTCAGCAGCCTTACCAGAACCTTTGAAATTGGGGATTTTGT
TGAAGCAAGAAGGTGGATAGGGTTTGATGAGATCTTTTTCTTCCATTAGT
TTCCATATGTGTTGACGTTTCGATTCTTTTAACGCTCCTATATCCACTTC
TTTTGAACAATGGTCGGATGTTTTTGCTTTTCCTTGGTCTGCAGTACTGG
TCAAGTTATCAATAACGGAAAGACTCTGAAAAGTTGTGCATAATTCTTCG
GTCTTTTCTTCAGTTTCACTGCCTGTTTTTTTATTGTTCATATTTGTTTC
TAAATATTGAAAAAAAATTGACAAGGATGATGTAGTTTGGCCCATGGGGG
GTACTACCCTTGTCGACCGACGGGAGTGCTCCGCTGAGGTTCGAAAAATT
GACCCTACGTTGGACTCAAAATTTGCGAAAAAAGTGACCCTGAATGGGAC
TGAAATTCCAAAATTTTCTNTGCCAAAACTGTTTTAAATTCTTTGGATCC
ACGACATACATAAACGCGTCTCCTAGCGCAGGGCTTGGAACAAACAAAGT
CTTACCATTACGTAATGTTAAGAATCGAAGATGCATTTGAGCCAAGGAAG
GATTGATTTTAATGATTCGAGCAGATTGAAATTCACGCAATTTACTTAAT
TTTTCAGCAGCCTTACCAGAACCTTTGAAATTGGGGATTTTGTTGAAGCA
AGAAGGTGGATAGGGTTTGATGAGATCTTTTTCTTCCATTAGTTTCCATA
TGTGTTGACGTTTCGATTCTTTTAACGCTCCTATATCCACTTCTTTTGAA
CAATGGTCGGATGTTTTTGCTTTTCCTTGGTCTGCAGTACTGGTCAAGTT
ATCAATAACGGAAAGACTCTGAAAAGTTGTGCATAATTCTTCGGTCTTTT
CTTCAGTTTCACTGCCTGTTTTTTTATTGTTCATATTTGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013257XLOC_013257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023590-exon-sc0000456-1575043694:250459..251024TCONS_00023590-exon-sc0000456-1575043694:250459..251024Clytia hemisphaericaexon
TCONS_00023590-exon-sc0000456-1575043694:249382..249815TCONS_00023590-exon-sc0000456-1575043694:249382..249815Clytia hemisphaericaexon
TCONS_00023590-exon-sc0000456-1510915933:250459..251024TCONS_00023590-exon-sc0000456-1510915933:250459..251024Clytia hemisphaericaexon
TCONS_00023590-exon-sc0000456-1510915933:249382..249815TCONS_00023590-exon-sc0000456-1510915933:249382..249815Clytia hemisphaericaexon
TCONS_00023590-exon-sc0000456-1491911889:250459..251024TCONS_00023590-exon-sc0000456-1491911889:250459..251024Clytia hemisphaericaexon
TCONS_00023590-exon-sc0000456-1491911889:249382..249815TCONS_00023590-exon-sc0000456-1491911889:249382..249815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:249382..251024 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.82182	8.89777	6.15224	6.23534	1.38549	0.664304	2.37643	2.17076	1.5465	0.926508	1.2644	1.01113	1.42012	1.6313	1.06512	1.3112	1.67771	3.05475	0.935207	0.602648	1.58348	1.326	6.78372	4.61787	1.4942	1.33184	0.8416	0.482091	3.45664	5.01096
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002698FTHF_cligase
Blast
[Close]
BLAST of TCONS_00023590 vs. Swiss-Prot (Human)
Match: MTHSD (Methenyltetrahydrofolate synthase domain-containing protein OS=Homo sapiens GN=MTHFSD PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 3.209e-42
Identity = 89/245 (36.33%), Postives = 135/245 (55.10%), Query Frame = -1 
Query:  107 IGALKESKRQHIWKLMEEKDLIKPYPPSCFNKIPNFKGSGKAAEKLSKLREFQSARIIKINPSLAQMHLRFLTLRNGKTLFVPSPALGDAFMYVVDPKNLKQFWQFKRASSKAGAKEFGTELSISRDSESKIDLYVVASTVVSANGVRLGKGLGYAELEWAIFYMHGMVTKDTIVATTVHDSQVLSPTDLPISLMKCHDLPVDIIVTPTRVINVRKKLIKPSGGVHWDLVTENQLENIPILKRLK 841
            +G  K+  R+ IW  ME ++L   +P    ++IPNFKGS  A + +  L  F   + +K++P      +R L L++ KTL VP+P L       + P         ++ ++  G + +   + +  DS   +DL VV S  VS  G R+GKG GYA+LE+A+    G V+K+T V T VHD QV+   D+P  L++ HD+ VD I+TPTRVI    K  KP  G+ W  ++   +E IPIL+ L+
Sbjct:    6 VGVSKQDIREQIWGYMESQNLAD-FPRPVHHRIPNFKGSYLACQNIKDLDVFARTQEVKVDPDKPLEGVRLLVLQSKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGL--DSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVV---DIPEELVEEHDITVDYILTPTRVIATGCKRPKPM-GITWFKISLEMMEKIPILRSLR 243
The following BLAST results are available for this feature:
BLAST of TCONS_00023590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTHSD3.209e-4236.33Methenyltetrahydrofolate synthase domain-containin... [more]
back to top