TCONS_00023588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023588
Unique NameTCONS_00023588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023588 ID=TCONS_00023588|Name=TCONS_00023588|organism=Clytia hemisphaerica|type=transcript|length=2089bp
ATTCTTTTTCACGATGAGAGGGTTTTGTATCATCATTTTGCTGCTTGCAA
GTTTCTCCTCCACGAAACTTAAACCAATCATCACCAATGAAGATCTAATT
GATGCACTGAAAGATACTTTGGATGCATTTGCCAAAAGAAGCAGTTCTCA
AGGACcaaagtcgttcgtccaaggtggagacgcgCAAGgacccaagtcgt
tcgtccaaggtggtgacgcccaaggacccaagtcgttcgtccaagtgGTG
ACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggccca
agtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaag
tgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGg
gcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgt
ccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCC
CAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcg
ttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTG
ACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggccca
agtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaag
tgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGg
gcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgt
ccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCC
CAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcg
ttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTG
ACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggccca
agtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaag
tgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGg
gcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgt
ccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtggtgacgcc
caaggacccaagtctAAAGTTTCCAAACAACCAAAGAAAGTTGTGGTCAA
TATTAATGtgtattaatttttgtttttgattttcagttctGTAATTTGTA
AATATGATAAAATCGACGAATGATGCTATTATCacttaaatcaaaatttc
actttttggaaGACCTTTTCAACCAATATCGGTTCAAATACGAATTTAGC
ATAAGTAAGTCATCGTCTTTAAACATTTGAATACAAAATGTAATTCAGTT
TTTGACATTCAACAGCTTCTTTCAACAACAAATCAGTATGCGACAACGTT
TACCCAATTTTGACCATTTAGATTTTAACTTGTAAGTGTAGGCTCTTTAT
GACTTAAGTGACACACGAAGTTTATTGctaaaaatttcaagttattgTTT
ACTGCTTTAATTTACAATGAGTCCGGAAAAAGTGGAGTGAAACTTtcatt
tattgattgatttctaTTTTNAATTATTGTTTACTACTTTAATTTACAAT
GAGTCCGGAAAAAGTGGAGTGAAACTTTCATTTGTTGATTGATTTCTATT
TTCTAAAGAACAATGGCCTTGAAAATCAATTAGCTGAGGGACTTGAAGTT
CTCCAAACAGACTGAAATTTCTGTTTATTTATATCACTGGGATCTGACTT
TTGGGCATTTCAACAGTGGGTGATGGGTTCCATTGAGTCTTCGATACGGG
TAGGTGACAAATGGGGATTGATATCTCTATTTTGCCCATtactggggatt
tcaattcattGTTTTGGAGCAAAACAATTTAGGGGATGAAAATAGCACAA
Tgatttgcagtgaggattgccttatctgattattttcagcggggacaaaa
attagagtcaAAGttaccaccggggacgatattttggca
Run BLAST on NCBI

transcript from alignment at sc0000456:184411..187104-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023588 ID=TCONS_00023588|Name=TCONS_00023588|organism=Clytia hemisphaerica|type=transcript|length=2694bp|location=Sequence derived from alignment at sc0000456:184411..187104- (Clytia hemisphaerica)
ATTCTTTTTCACGATGAGAGGGTTTTGTATCATCATTTTGCTGCTTGCAA
GTTTCTCCTCCACGAAACTTAAACCAATCATCACCAATGAAGATCTAAGT
AAGTCGAACCTTCTTTTACTTTACGATGACTTTCTAAATTTTCATTCCAT
TCTTTTAAAAATGACGAATGAAGTTTAACATCAGGTTTCAGTAGGTCCTG
TGCATTGCCCGATGTAGGTATGTAAGGAGCCTAGCATTTAAAGGGTTTTT
TTTAACCCATGTATACCGTGCAATTCATATTTCTAAAACTTTAAAAACTA
TCAAGATTACATTTACTTGGGTAATTGTAATTCTTGATGCTTGGCCCAAA
ATGTATATGCCATCCGAAACCTCTAAATCCCTCTCATTCATTCACAAAGT
TCTTAAAAAATATATCTCAAAAAAATTATTTTGAAATAAGATTTGATGGC
TTGAAAATTCTCGAACAGTTTTCAACATTCTTATCTATTAAAATGGTAAA
GCGGATATTTTATATGACAAAATAAGCGATCTCTCTCGTACGCTTTTATC
ATATTTTGCATAAAGTTTTGTAACAAAAATAATTTTTTATTATAGTTGAT
GCACTGAAAGATACTTTGGATGCATTTGCCAAAAGAAGCAGTTCTCAAGG
ACCAAAGTCGTTCGTCCAAGGTGGAGACGCGCAAGGCCCCAAGTCGTTTG
TCAAAGGTGGTGACGCCCAAGGACCCAAGTTGTTCGTCCAAGGTGGTGAC
GCGCAAGGACCCAAGTCGTTCGTCCAAGGTGGTGACGCTCAAGGACCCAA
GTCGTTCGTCCAAGGTGGTGACGCCCAAGGACCCAAGTCGTTCGTCCAAG
TGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGG
GCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGT
CCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCC
CAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCG
TTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTG
ACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCA
AGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAG
TGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGG
GCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGT
CCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCC
CAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCG
TTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTG
ACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCA
AGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAG
TGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGG
GCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGT
CCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCC
CAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCG
TTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTG
ACGCCCAAGGACCCAAGTCTAAAGTTTCCAAACAACCAAAGAAAGTTGTG
GTCAATATTAATGTGTATTAATTTTTGTTTTTGATTTTCAGTTCTGTAAT
TTGTAAATATGATAAAATCGACGAATGATGCTATTATCACTTAAATCAAA
ATTTCACTTTTTGGAAGACCTTTTCAACCAATATCGGTTCAAATACGAAT
TTAGCATAAGTAAGTCATCGTCTTTAAACATTTGAATACAAAATGTAATT
CAGTTTTTGACATTCAACAGCTTCTTTCAACAACAAATCAGTATGCGACA
ACGTTTACCCAATTTTGACCATTTAGATTTTAACTTGTAAGTGTAGGCTC
TTTATGACTTAAGTGACACACGAAGTTTATTGCTAAAAATTTCAAGTTAT
TGTTTACTGCTTTAATTTACAATGAGTCCGGAAAAAGTGGAGTGAAACTT
TCATTTATTGATTGATTTCTATTTTNAATTATTGTTTACTACTTTAATTT
ACAATGAGTCCGGAAAAAGTGGAGTGAAACTTTCATTTGTTGATTGATTT
CTATTTTCTAAAGAACAATGGCCTTGAAAATCAATTAGCTGAGGGACTTG
AAGTTCTCCAAACAGACTGAAATTTCTGTTTATTTATATCACTGGGATCT
GACTTTTGGGCATTTCAACAGTGGGTGATGGGTTCCATTGAGTCTTCGAT
ACGGGTAGGTGACAAATGGGGATTGATATCTCTATTTTGCCCATTACTGG
GGATTTCAATTCATTGTTTTGGAGCAAAACAATTTAGGGGATGAAAATAG
CACAATGATTTGCAGTGAGGATTGCCTTATCTGATTATTTTCAGCGGGGA
CAAAAATTAGAGTCAAAGTTACCACCGGGGACGATATTTTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013255XLOC_013255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023588-exon-sc0000456-1575043694:187007..187104TCONS_00023588-exon-sc0000456-1575043694:187007..187104Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1575043694:186420..186509TCONS_00023588-exon-sc0000456-1575043694:186420..186509Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1575043694:184411..186311TCONS_00023588-exon-sc0000456-1575043694:184411..186311Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1510915933:187007..187104TCONS_00023588-exon-sc0000456-1510915933:187007..187104Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1510915933:186420..186509TCONS_00023588-exon-sc0000456-1510915933:186420..186509Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1510915933:184411..186311TCONS_00023588-exon-sc0000456-1510915933:184411..186311Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1491911889:187007..187104TCONS_00023588-exon-sc0000456-1491911889:187007..187104Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1491911889:186420..186509TCONS_00023588-exon-sc0000456-1491911889:186420..186509Clytia hemisphaericaexon
TCONS_00023588-exon-sc0000456-1491911889:184411..186311TCONS_00023588-exon-sc0000456-1491911889:184411..186311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:184411..187104 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0575	15.4509	18.1467	14.4075	0.305385	0.294039	0.0727855	0.0951358	0	0.224063	0	4.40441e-05	0	0.0130339	0	0	0.0141626	0.0217718	0	0	0	0	5.74861	4.11066	0	0	0.252021	0.222775	2.71349	3.24107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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