TCONS_00023587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023587
Unique NameTCONS_00023587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2121

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023587 ID=TCONS_00023587|Name=TCONS_00023587|organism=Clytia hemisphaerica|type=transcript|length=2121bp
TTTTTCACGATGAGAGGGTTTTGTATCATCATTTTGCTGCTTGCAAGTTT
CTCCTCCACGAAACTTAAACCAATCATCACCAATGAAGATCTAATTGATG
CACTGAAAGATACTTTGGATGCATTTGCCAAAAGAAGCAGTTCTCAAGGA
CcaaagtcgttcgtccaaggtggagacgcgCAAGgacccaagtcgttcgt
ccaaggtggtgacgctcaaggacccaagtcgttcgtccaaggtggtgacg
cccaaggacccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagt
cgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgG
TGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcc
caagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtcca
agtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAA
GggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttc
gtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACG
CCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagt
cgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgG
TGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcc
caagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtcca
agtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAA
GggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttc
gtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACG
CCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcccaagt
cgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgG
TGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAAGggcc
caagtcgttcgtccaagtgGTGACGCCCAAGggcccaagtcgttcgtcca
agtgGTGACGCCCAAGggcccaagtcgttcgtccaagtgGTGACGCCCAA
GggcccaagtcgttcgtccaagtggtgacgcccaaggacccaagtctAAA
GTTTCCAAACAACCAAAGAAAGTTGTGGTCAATATTAATGtgtattaatt
tttgtttttgattttcagttctGTAATTTGTAAATATGATAAAATCGACG
AATGATGCTATTATCacttaaatcaaaatttcactttttggaaGACCTTT
TCAACCAATATCGGTTCAAATACGAATTTAGCATAAGTAAGTCATCGTCT
TTAAACATTTGAATACAAAATGTAATTCAGTTTTTGACATTCAACAGCTT
CTTTCAACAACAAATCAGTATGCGACAACGTTTACCCAATTTTGACCATT
TAGATTTTAACTTGTAAGTGTAGGCTCTTTATGACTTAAGTGACACACGA
AGTTTATTGctaaaaatttcaagttattgTTTACTGCTTTAATTTACAAT
GAGTCCGGAAAAAGTGGAGTGAAACTTtcatttattgattgatttctaTT
TTNAATTATTGTTTACTACTTTAATTTACAATGAGTCCGGAAAAAGTGGA
GTGAAACTTTCATTTGTTGATTGATTTCTATTTTCTAAAGAACAATGGCC
TTGAAAATCAATTAGCTGAGGGACTTGAAGTTCTCCAAACAGACTGAAAT
TTCTGTTTATTTATATCACTGGGATCTGACTTTTGGGCATTTCAACAGTG
GGTGATGGGTTCCATTGAGTCTTCGATACGGGTAGGTGACAAATGGGGAT
TGATATCTCTATTTTGCCCATtactggggatttcaattcattGTTTTGGA
GCAAAACAATTTAGGGGATGAAAATAGCACAATgatttgcagtgaggatt
gccttatctgattattttcagcggggacaaaaattagagtcaAAGttacc
accggggacgatattttggca
Run BLAST on NCBI

protein sequence of TCONS_00023587-protein

>TCONS_00023587-protein ID=TCONS_00023587-protein|Name=TCONS_00023587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
FFTMRGFCIIILLLASFSSTKLKPIITNEDLIDALKDTLDAFAKRSSSQG
PKSFVQGGDAQGPKSFVQGGDAQGPKSFVQGGDAQGPKSFVQVVTPKGPS
RSSKW
Run BLAST on NCBI

transcript from alignment at sc0000456:184411..187100-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023587 ID=TCONS_00023587|Name=TCONS_00023587|organism=Clytia hemisphaerica|type=transcript|length=2690bp|location=Sequence derived from alignment at sc0000456:184411..187100- (Clytia hemisphaerica)
TTTTTCACGATGAGAGGGTTTTGTATCATCATTTTGCTGCTTGCAAGTTT
CTCCTCCACGAAACTTAAACCAATCATCACCAATGAAGATCTAAGTAAGT
CGAACCTTCTTTTACTTTACGATGACTTTCTAAATTTTCATTCCATTCTT
TTAAAAATGACGAATGAAGTTTAACATCAGGTTTCAGTAGGTCCTGTGCA
TTGCCCGATGTAGGTATGTAAGGAGCCTAGCATTTAAAGGGTTTTTTTTA
ACCCATGTATACCGTGCAATTCATATTTCTAAAACTTTAAAAACTATCAA
GATTACATTTACTTGGGTAATTGTAATTCTTGATGCTTGGCCCAAAATGT
ATATGCCATCCGAAACCTCTAAATCCCTCTCATTCATTCACAAAGTTCTT
AAAAAATATATCTCAAAAAAATTATTTTGAAATAAGATTTGATGGCTTGA
AAATTCTCGAACAGTTTTCAACATTCTTATCTATTAAAATGGTAAAGCGG
ATATTTTATATGACAAAATAAGCGATCTCTCTCGTACGCTTTTATCATAT
TTTGCATAAAGTTTTGTAACAAAAATAATTTTTTATTATAGTTGATGCAC
TGAAAGATACTTTGGATGCATTTGCCAAAAGAAGCAGTTCTCAAGGACCA
AAGTCGTTCGTCCAAGGTGGAGACGCGCAAGGCCCCAAGTCGTTTGTCAA
AGGTGGTGACGCCCAAGGACCCAAGTTGTTCGTCCAAGGTGGTGACGCGC
AAGGACCCAAGTCGTTCGTCCAAGGTGGTGACGCTCAAGGACCCAAGTCG
TTCGTCCAAGGTGGTGACGCCCAAGGACCCAAGTCGTTCGTCCAAGTGGT
GACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCC
AAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAA
GTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAG
GGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCG
TCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGC
CCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTC
GTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGT
GACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCC
AAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAA
GTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAG
GGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCG
TCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGC
CCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTC
GTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGT
GACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCC
AAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAA
GTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAG
GGCCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCG
TCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGACGC
CCAAGGACCCAAGTCTAAAGTTTCCAAACAACCAAAGAAAGTTGTGGTCA
ATATTAATGTGTATTAATTTTTGTTTTTGATTTTCAGTTCTGTAATTTGT
AAATATGATAAAATCGACGAATGATGCTATTATCACTTAAATCAAAATTT
CACTTTTTGGAAGACCTTTTCAACCAATATCGGTTCAAATACGAATTTAG
CATAAGTAAGTCATCGTCTTTAAACATTTGAATACAAAATGTAATTCAGT
TTTTGACATTCAACAGCTTCTTTCAACAACAAATCAGTATGCGACAACGT
TTACCCAATTTTGACCATTTAGATTTTAACTTGTAAGTGTAGGCTCTTTA
TGACTTAAGTGACACACGAAGTTTATTGCTAAAAATTTCAAGTTATTGTT
TACTGCTTTAATTTACAATGAGTCCGGAAAAAGTGGAGTGAAACTTTCAT
TTATTGATTGATTTCTATTTTNAATTATTGTTTACTACTTTAATTTACAA
TGAGTCCGGAAAAAGTGGAGTGAAACTTTCATTTGTTGATTGATTTCTAT
TTTCTAAAGAACAATGGCCTTGAAAATCAATTAGCTGAGGGACTTGAAGT
TCTCCAAACAGACTGAAATTTCTGTTTATTTATATCACTGGGATCTGACT
TTTGGGCATTTCAACAGTGGGTGATGGGTTCCATTGAGTCTTCGATACGG
GTAGGTGACAAATGGGGATTGATATCTCTATTTTGCCCATTACTGGGGAT
TTCAATTCATTGTTTTGGAGCAAAACAATTTAGGGGATGAAAATAGCACA
ATGATTTGCAGTGAGGATTGCCTTATCTGATTATTTTCAGCGGGGACAAA
AATTAGAGTCAAAGTTACCACCGGGGACGATATTTTGGCA

Coding sequence (CDS) from alignment at sc0000456:184411..187100-

>TCONS_00023587 ID=TCONS_00023587|Name=TCONS_00023587|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000456:184411..187100- (Clytia hemisphaerica)
GACCCAAGTCGTTCGTCCAAGGTGGTGACGCTCAAGGACCCAAGTCGTTC
GTCCAAGGTGGTGACGCCCAAGGACCCAAGTCGTTCGTCCAAGTGGTGAC
GCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGTGATTGATGCACTGAAAGA
TACTTTGGATGCATTTGCCAAAAGAAGCAGTTCTCAAGGACCAAAGTCGT
TCGTCCAAGGTGGAGACGCGCAAGTTTTTCACGATGAGAGGGTTTTGTAT
CATCATTTTGCTGCTTGCAAGTTTCTCCTCCACGAAACTTAAACCAATCA
TCACCAATGAAGATCTAAGACCCAAGTCGTTCGTCCAAGGTGGTGACGCT
CAAGGACCCAAGTCGTTCGTCCAAGGTGGTGACGCCCAAGGACCCAAGTC
GTTCGTCCAAGTGGTGACGCCCAAGGGCCCAAGTCGTTCGTCCAAGTGGT
GATTGATGCACTGAAAGATACTTTGGATGCATTTGCCAAAAGAAGCAGTT
CTCAAGGACCAAAGTCGTTCGTCCAAGGTGGAGACGCGCAAGTTTTTCAC
GATGAGAGGGTTTTGTATCATCATTTTGCTGCTTGCAAGTTTCTCCTCCA
CGAAACTTAAACCAATCATCACCAATGAAGATCTAAGACCCAAGTCGTTC
GTCCAAGGTGGTGACGCTCAAGGACCCAAGTCGTTCGTCCAAGGTGGTGA
CGCCCAAGGACCCAAGTCGTTCGTCCAAGTGGTGACGCCCAAGGGCCCAA
GTCGTTCGTCCAAGTGGTGATTGATGCACTGAAAGATACTTTGGATGCAT
TTGCCAAAAGAAGCAGTTCTCAAGGACCAAAGTCGTTCGTCCAAGGTGGA
GACGCGCAAGTTTTTCACGATGAGAGGGTTTTGTATCATCATTTTGCTGC
TTGCAAGTTTCTCCTCCACGAAACTTAAACCAATCATCACCAATGAAGAT
CTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013255XLOC_013255Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023587-proteinTCONS_00023587-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023587-exon-sc0000456-1575043694:187007..187100TCONS_00023587-exon-sc0000456-1575043694:187007..187100Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1575043694:186420..186509TCONS_00023587-exon-sc0000456-1575043694:186420..186509Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1575043694:184411..186347TCONS_00023587-exon-sc0000456-1575043694:184411..186347Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1510915933:187007..187100TCONS_00023587-exon-sc0000456-1510915933:187007..187100Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1510915933:186420..186509TCONS_00023587-exon-sc0000456-1510915933:186420..186509Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1510915933:184411..186347TCONS_00023587-exon-sc0000456-1510915933:184411..186347Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1491911889:187007..187100TCONS_00023587-exon-sc0000456-1491911889:187007..187100Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1491911889:186420..186509TCONS_00023587-exon-sc0000456-1491911889:186420..186509Clytia hemisphaericaexon
TCONS_00023587-exon-sc0000456-1491911889:184411..186347TCONS_00023587-exon-sc0000456-1491911889:184411..186347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:184411..187100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
940.931	835.757	595.854	418.739	0	0.265218	0	0.292749	0.111455	0.42123	0.018799	0.012579	0.0129628	0	0.0421453	0.0118154	3.88428e-06	0.0218228	0.0228567	0.0206405	1.14136	0.455465	276.308	243.514	0	0	12.6783	16.6486	173.068	197.346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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