TCONS_00023583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023583
Unique NameTCONS_00023583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023583 ID=TCONS_00023583|Name=TCONS_00023583|organism=Clytia hemisphaerica|type=transcript|length=2091bp
aTCAACTCTAGATAACGTTGAGACATCTTACTAATaacaatttaaaaact
ttttaattgcCTTAAACTTTTAACACCACATGGAAAATATGGACCACttt
aaaacaattatctggTTATATTGTGTCTGGTGTTCATTAACATTGGTGAA
ATCGAATGTCATTAGAgTTCCAAAGAATTGTGATAAATCTTCATTTGTAA
AGAGTTTTGTGGTGACTGGCACTGCATTGACACATAATGCCTACAAGAAT
TTGAGAAACACTTGCAAAACTTATCAGCCAAAGTGCGAACACACCGCGGC
AAAGAACTTTTGGNAGCACTTGCAAAACTTATCAGCCAAAGTGCGAACAT
ACTGCAGCAAAGAACTTTTGGTTGACGCTCGCTCACAACCCTGCTCAAAA
GAAGATCATTTTCATTCTTGAATTAGAGAATCTATTTCCGCAAGAATGTT
GGGGATACGTCTTACAAATCTCACAGCTCTCATCAAAAACAGAAACCAGA
TACTTCAATTTCACAACAAATGACTCGCTACAgacaaagaaaaatctttt
cacaACAGTGGATATTTCATATGGGGAAGAATATAATTTTCAGTTCACCC
CTTTACCAACAGGGCGACCTCTTGTGATCAATGCTAGAGCTCCAAcaATT
TGCGAACTTGATGTCCTTGTTCAGATCTATGATTGATATATGGCAAGATT
GAGGATAGCTAAACGAATTTGTTTACTACATCCAACAGATAAAACGAAAC
GACGTGAATATGTTGCAAGAAAATTGATGGAGAGAAAATGCCGGTTCGAA
CTAAGAACTTGAGATGACGTGTTCACAGGGTATTACTTAGTGAAAAACTA
AATAGAAAGCAAAAGAGAAAAGAAGGCAAAGAATCTTCAAAGAATATGTC
TGATATACTCTGCTGTGTTGGAACTCGATTCAAGATGGCCTTTCGTACTT
TTAACACAGATGTTATGTCATTATTGCTCTTGTAAATAAATATTCCTTCA
AAATAGTTATatgttagaaaaataaaaacagtacTATacatattaaaaaa
agaaatagcaTTTCTAAATCCATTACATCAATTCACCTGGTAATCCTCTG
GTTACCCTTACACGTTGAATTTCATGATATTTACTTCATGTTTATTCGTA
CTGCTAAAATAACAGCTTGTGAGATAGAATTGAAGGTCACACAAACATAA
GAAACCAACTGATTTTGGTGCCATATTAATCGCTCCAACGAGAATGGTAt
tgtaaataaaatgaaagagcTAGTCAATAGAAtacctaaaaaaagttgat
gAAAGTGTGACGAGTCGTGTAAAAGATGCGCGTGAACTCTACAAATCGTG
TCACTTGAAAGGTCGTTCGAGTGTTTCTCGCGAACTTCCATACGCCGGTT
AATGATTGTACGTCGTGTGATATCTATGTAACATGCAAGCAAGAAGAAGT
CTGTGACCAAGATAATACAACTGAATATCAGGGTGATTTCGTGTTCCAGA
TACACGAAAAATAGCAGGAAAGTGCAAACAAGGGTCGAGATCCACGTTAG
AGCGATGTAGAAATTATTTTCTTCGGGTAGAACGTCATCTCGGCACGAAA
TTTTAAAGTCGTTCACCATGATACTCAACAGGTGAAACATAGTACTGATA
ACAGTCATTGCTAGAATGAACGTTTCTGCGAGCCCCATGTATGGATAATA
GCCAGATAAGTGATAGGTTATCAAAGTAACTATAGCGGTAACGAGCAAGC
AAGCACCACTTAACACATTCAAAAGAGATAAACTGTTACCAAATTTCTTT
ATTGTGTGCAATTCGTTAGGTATGTGTGGTGGTGAAATGAGATTTTGAGC
GGAAGACGGTACTCGAGCATTTAGAAAATGGAAGAGAATAATGTTAATCA
ATATAACGGCCGTACTGAAGATGAGCTGGAGAATCAACCAATCATTTGAT
GCCATTTCCTGATTATTTaaatgaaaatatgataaattCCATCCAGTTTT
GGTTCCTGAAAAGATAACGATTTTGTATGAGAATAAGTCACCGAGAAGAA
ATTTCAATACGTTCCCTTACAAGTCAAGAAACATCCAGCAA
Run BLAST on NCBI

transcript from alignment at sc0000456:20829..25089-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023583 ID=TCONS_00023583|Name=TCONS_00023583|organism=Clytia hemisphaerica|type=transcript|length=4261bp|location=Sequence derived from alignment at sc0000456:20829..25089- (Clytia hemisphaerica)
ATCAACTCTAGATAACGTTGAGACATCTTACTAATAACAATTTAAAAACT
TTTTAATTGCCTTAAACTTTTAACACCACATGGAAAATATGGACCACTTT
AAAACAATTATCTGGTTATATTGTGTCTGGTGTTCATTAACATTGGTGAA
ATCGAATGTCATTAGAGGTATTTATATTTTTCTAAGCCGTTAAATTTATT
GGCTAGATATGGTAGTCTAGTCTAGTCTAACTTTAGCTGACCATGAGGTC
TGCAACCTTGGAGAAAGCATATTTATTTAACGATAATTTTAGCAAACTAG
CATATAAAACACGTGGTCTAGACATGATGTTTTCTCAACAAACATAAAAA
CTTAAAAGCCTCGTTTTGAATCACAAGTGTCACTAATTTTAGAGAGGCTC
TCCGTGGGGGGTTCATCGAGTATCGTTTATATTTTTCAATTTTGATCATT
TCTGTTTTTTTAGTTCCAAAGAATTGTGATAAATCTTCATTTGTAAAGAG
TTTTGTGGTGACTGGTAAGTTAGCATTCAGTTCAATAGCTTTGCTAACGA
TATTCTGCCCCGGGGTGGGGGGCACTGAAGGGAAGCGATCGACCGTACGG
GCCTTTATAATTTATTAAGGGTCCCTTTTCCAAGCTTCCCTAAGTGCACG
CTGTAAGGGTCGAAATGAGCAGAGATGGAAAAGTGCACTCTAAGGGTGGA
AAATCTGGAAAATCTGACCATTTTTTACCTGAAAATGCAAATGATTAAAA
ATGTTCAAGAAAATGCACTGTAAATTAAATGTCGATATTTTGCCCAAATT
TATCCATGTTATGCTAAATCTTCTCAGTACTGTAAGGGTCCAATTTCAAA
GGCCTAATTTTGGGCCGCGCGTACGGTCGTTTATGAGTCGAGGTTCCATC
CGGGGTTTCATTAAGTTTTTTCTCATCTGCGAGTGATTCGGTGGGTAATG
AAAGATTAACCAGGAATTTGAAGGGATACAAATTAAACATTGACTATTTT
TAGGCACTGCATTGACACATAATGCCTACAAGAATTTGAGAAACACTTGC
AAAACTTATCAGCCAAAGTGCGAACACACCGCGGCAAAGAACTTTTGGNA
GCACTTGCAAAACTTATCAGCCAAAGTGCGAACATACTGCAGCAAAGAAC
TTTTGGTTGACGCTCGCTCACAACCCTGCTCAAAAGAAGATCATTTTCAT
TCTTGAATTAGAGAATCTATTTCCGCAAGGTAATTAGTGTACTTGATCAA
TTGCTAATTGCAATGTCATTTAGAAAAGGATATCTAATGAGTATGAAACG
AAACAGGAATAAAATTCTAATGTTTCTTAGAACTTTTTTTGTAGATTGCT
AAGTATTCTGGAAGATGTCAGCTATTTTGTCTGATATCCTATTCATTTTT
CCCGAAATTTTACACATGCCCTGACTCCAAACTCACCACCAAAATACTAA
GCTTCGGCTAGTCCTCTAGCGAAAAGGTTTCTTATAAGAAGTCTAAATCT
GCGATTCAGGCTATAGTCAACTCTCTCTAATTCGATAATTCGAACCTCCA
TTATTCGAATCTTTCTATAATTTGAAATTAAATATTAGTATCCTCAGCTG
AAAAGTGGTCTAATAACTCTCTGTAATTCGAACCTTTCTCTAATCTAATT
CGAAGAACATTTTTTACCCCTTGAAGATCGAATTCGAGAGAGTTAACTTT
GACAAAATACCTGCTAATTTTTTTCTCTGCATTTTTGTTTTCAACAGAAT
GTTGGGGATACGTCTTACAAATCTCACAGCTCTCATCAAAAACAGAAACC
AGATACTTCAATTTCACAACAAATGACTCGCTACAGACAAAGAAAAATCT
TTTCACAACAGTGGATATTTCATATGGGGAAGAATATAATTTTCAGTTCA
CCCCTTTACCAACAGGGCGACCTCTTGTGATCAATGCTAGAGCTCCAAGT
AAGATTTAGACATCTAATTTCACGTAAGAATATTATCTCAAAAAGGAGAA
AGATTATCTCAAAATATATTAAACATTTTCAAGCACATTTTAACTCATTT
TAATAGCCCTTAGCCTTACACTTGTTCGCGATGTAAGCTTTATCAGAAAC
ACTTTTGTCTTTTTTAGCAATTTGCGAACTTGATGTCCTTGTTCAGATCT
ATGATTGTAAGTATTCGATAAAACTAAAAAACGAAATATCATGAAAATCA
TGAAAATCTGTTATATTCTCATTTCTTTATCTAAATTTTGAAAATTGTAT
CATATTTTTGTTTTGAAAATTTTGTTTGTTCGTGATTAATTGGATTTTTA
CCAAAGATGAAAAATTTATACAATTATGTCTACGAGAATTAACACACTCG
TGGTATTCATCCTTCGTCTCTCTTTGTTCTTAGTGCTACACAAATCAAAG
ATTTTCAAGAAATGTTCAAAACCAGGTGAGTTTTGGGTACTGAAAGGGGG
GGGGGGGGGGTGAAAAAAGGGGGGGGGGGGGGGTGAAAAAAGGGGGGGGG
GGGGGGTGAAAAAAGGGGGGGGGGGGCGTACGGGGTTTGCGATTTCCGAA
ATACCGAATAATTCTGCCAAAATTTCCGAAATTCCGTAAAAAAATACTTG
CAATTCCGAAACCGTTTTTTTGGGTATTGTTCCTCTTTTTGACTAATTTT
TCATCAAATTTGATTTTTCATGTATGGATTCCGAAAAAGGGGGATAAAAA
CTTTGTAATACCGAAATTTAGCAAAAAAGGTAGATTTCCGCAATTCCGAA
ATACCGTACGCCCCCCACTGAAATCAGCACAAAAATCCTTATCAGCTAAA
TCTACTAAATTTTTGAATGAATGGTTCAAATTCTCATGTTTCTCTAATTT
TTAGGATATATGGCAAGATTGAGGATAGCTAAACGAATTTGTTTACTACA
TCCAACAGATAAAACGAAACGACGTGAATATGTTGCAAGAAAATTGATGG
AGAGAAAATGCCGGTTCGAACTAAGAACTTGAGATGACGTGTTCACAGGG
TATTACTTAGTGAAAAACTAAATAGAAAGCAAAAGAGAAAAGAAGGCAAA
GAATCTTCAAAGAATATGTCTGATATACTCTGCTGTGTTGGAACTCGATT
CAAGATGGCCTTTCGTACTTTTAACACAGATGTTATGTCATTATTGCTCT
TGTAAATAAATATTCCTTCAAAATAGTTATATGTTAGAAAAATAAAAACA
GTACTATACATATTAAAAAAAGAAATAGCATTTCTAAATCCATTACATCA
ATTCACCTGGTAATCCTCTGGTTACCCTTACACGTTGAATTTCATGATAT
TTACTTCATGTTTATTCGTACTGCTAAAATAACAGCTTGTGAGATAGAAT
TGAAGGTCACACAAACATAAGAAACCAACTGATTTTGGTGCCATATTAAT
CGCTCCAACGAGAATGGTATTGTAAATAAAATGAAAGAGCTAGTCAATAG
AATACCTAAAAAAAGTTGATGAAAGTGTGACGAGTCGTGTAAAAGATGCG
CGTGAACTCTACAAATCGTGTCACTTGAAAGGTCGTTCGAGTGTTTCTCG
CGAACTTCCATACGCCGGTTAATGATTGTACGTCGTGTGATATCTATGTA
ACATGCAAGCAAGAAGAAGTCTGTGACCAAGATAATACAACTGAATATCA
GGGTGATTTCGTGTTCCAGATACACGAAAAATAGCAGGAAAGTGCAAACA
AGGGTCGAGATCCACGTTAGAGCGATGTAGAAATTATTTTCTTCGGGTAG
AACGTCATCTCGGCACGAAATTTTAAAGTCGTTCACCATGATACTCAACA
GGTGAAACATAGTACTGATAACAGTCATTGCTAGAATGAACGTTTCTGCG
AGCCCCATGTATGGATAATAGCCAGATAAGTGATAGGTTATCAAAGTAAC
TATAGCGGTAACGAGCAAGCAAGCACCACTTAACACATTCAAAAGAGATA
AACTGTTACCAAATTTCTTTATTGTGTGCAATTCGTTAGGTATGTGTGGT
GGTGAAATGAGATTTTGAGCGGAAGACGGTACTCGAGCATTTAGAAAATG
GAAGAGAATAATGTTAATCAATATAACGGCCGTACTGAAGATGAGCTGGA
GAATCAACCAATCATTTGATGCCATTTCCTGATTATTTAAATGAAAATAT
GATAAATTCCATCCAGTTTTGGTTCCTGAAAAGATAACGATTTTGTATGA
GAATAAGTCACCGAGAAGAAATTTCAATACGTTCCCTTACAAGTCAAGAA
ACATCCAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013252XLOC_013252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023583-exon-sc0000456-1575043694:24923..25089TCONS_00023583-exon-sc0000456-1575043694:24923..25089Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1575043694:24576..24626TCONS_00023583-exon-sc0000456-1575043694:24576..24626Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1575043694:23861..24086TCONS_00023583-exon-sc0000456-1575043694:23861..24086Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1575043694:23142..23342TCONS_00023583-exon-sc0000456-1575043694:23142..23342Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1575043694:22934..22972TCONS_00023583-exon-sc0000456-1575043694:22934..22972Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1575043694:20829..22235TCONS_00023583-exon-sc0000456-1575043694:20829..22235Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1510915933:24923..25089TCONS_00023583-exon-sc0000456-1510915933:24923..25089Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1510915933:24576..24626TCONS_00023583-exon-sc0000456-1510915933:24576..24626Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1510915933:23861..24086TCONS_00023583-exon-sc0000456-1510915933:23861..24086Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1510915933:23142..23342TCONS_00023583-exon-sc0000456-1510915933:23142..23342Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1510915933:22934..22972TCONS_00023583-exon-sc0000456-1510915933:22934..22972Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1510915933:20829..22235TCONS_00023583-exon-sc0000456-1510915933:20829..22235Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1491911889:24923..25089TCONS_00023583-exon-sc0000456-1491911889:24923..25089Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1491911889:24576..24626TCONS_00023583-exon-sc0000456-1491911889:24576..24626Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1491911889:23861..24086TCONS_00023583-exon-sc0000456-1491911889:23861..24086Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1491911889:23142..23342TCONS_00023583-exon-sc0000456-1491911889:23142..23342Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1491911889:22934..22972TCONS_00023583-exon-sc0000456-1491911889:22934..22972Clytia hemisphaericaexon
TCONS_00023583-exon-sc0000456-1491911889:20829..22235TCONS_00023583-exon-sc0000456-1491911889:20829..22235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:20829..25089 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0482496	0.0381143	0	0	0	0	0	0	0	0.232717	0	0	0	0	0.277037	0	0	0	0	0	0	0	0	0	0.0825466	0	0.389079	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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