TCONS_00023581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023581
Unique NameTCONS_00023581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023581 ID=TCONS_00023581|Name=TCONS_00023581|organism=Clytia hemisphaerica|type=transcript|length=718bp
GGGGACTATAAGAAATACATGACAAAGGTTGCTCAACATCTCGGCTATAC
TTGTGATACAGTTGAAGAAGAAATCGGAGAGATTCTAGAGTTTGAAAAAA
AGCTAGCAAAGCTGACTACTCCAGCAGAAGCCAAGCAGGCTGGAACTTTC
CGTCGCATTAACATCAATATTCTTGGAAAATGCATATCACAGTTTCCCTG
GTATGAGCATATCAAGGCAATCTTTCCAAAGAGCGCCAATATAAAGCGAG
ATGATGTGGTACTGGCAACTTCACCTCAATATCTTTACAATGTTGCAAGT
TTGATAACTAGTGTTGATAAAAAGCTACTATCAAAATATATTGTATGGCA
AATGTTGCGAGATAAAATCTCGTTCCTTTCTCAACCATTTCGTGACGCGA
GAGCTGCATTCAACAAGAAGATGACGGGTGTTGAAGATACAGAAGATCGA
TGGCGTTGGTGTACTTCGGTCACAAATGATAACATGGGTGTACCTATTGG
AACACTTTATGTCAATAAATACTTCTCCGATGAAACTAAAAATAAGACTC
AAGTCATGGTTGATGAAGTCATAGATGCATTTATAAGACGTATCAAAAAT
AACCATACGTGGATTGATAATACGACAAAAGAACACGTCATTGCTAAGGC
GAACGCTATGGTGGCCAAACTTGGACATGcgacatatataaaaaatatca
ctGCTCTAAATATACGAT
Run BLAST on NCBI

transcript from alignment at sc0000456:259636..262596+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023581 ID=TCONS_00023581|Name=TCONS_00023581|organism=Clytia hemisphaerica|type=transcript|length=2961bp|location=Sequence derived from alignment at sc0000456:259636..262596+ (Clytia hemisphaerica)
GGGGACTATAAGAAATACATGACAAAGGTTGCTCAACATCTCGGCTATAC
TTGTGATACAGTTGAAGAAGAAATCGGAGAGATTCTAGAGTTTGAAAAAA
AGCTAGCAAAGGTATTTCCAACTCAATTTTATTTAAGAATTAAGTATCTC
GAGAATATTCGAACGAATAGCTGATGTATGCCTTTCTCAACTTCATTTGA
GCTAGAAACTGAGAATGTCAGTCTNAGCTAGCAAAGGTATTTCCAACTCA
ATTTTATTTAAGAATTAAGTATCTCGAGAATATTCGAACGAATAGCTGAT
GTATGCCTTTCTCAACTTCATTTGAGCTAGAAACTGAGAATGTCAGTCTA
TTTTTGTGTGTGTCCGTCCTCTCAAAACTTAAGGCTGAAGACTGTCAATA
ATAGTCCATTTTGGATCAAATTTGGAATCAACTAAAAAAATTTAATTAAT
ATTTCTCTACAGCTGACTACTCCAGCAGAAGCCAAGCAGGCTGGAACTTT
CCGTCGCATTAACATCAATATTCTTGGAAAATGCATATCACAGGTATAAT
GGGATCTCTCTTTATCGCCCTGTACTGTCGAGAGACAAAAGAGCTTTGTA
TTTTTACTGTAAAATGTTTTTACCACCGAACAGCAATAATACCTGGTTTC
GGAATGAAACAGATTTCAAATTTCTTAGATGCGGATCTCACACTCTAACA
CTGTAAACTTACTTCGGAATCAAACCGCTGTCAAGAATTTTCCTCTGACT
TGAAGCTTTTTTAGATCACGATTTCAGGCGAACTCTGTAAAAGTCCTAAA
TCAGgaaaattaatattttatcGATCATTCAAGAATTCTAAGATTTCTAA
GAAAACATatctttcaaatgttttgagagattttttttctcgaaaagttg
GGATATCGAATATATAAAAATTATcataattttaacaatttttatattat
attatccTTGTATTTTCACTGTGTTTTTTTTACATTCATCATGTTTCCAG
TTTCCCTGGTATGAGCATATCAAGGCAATCTTTCCAAAGAGCGCCAATAT
AAAGCGAGATGATGTGGTACTGGCAACTTCACCTCAATATCTTTACAATG
TTGCAAGTTTGATAACTAGTGTTGATAAAAAGTAAGCATTCTTTATCTTT
AGATCACTCAACTATCCTCAATTTAAATTCAGACTTGAGTTTTTTATGAA
CAAGCATCATTGTTATACATTACTTGATGCAGCCTTTTTTCATCTACAAA
ATCAGTTGTATTATTCGTTTACCCGTTAATCCATTTCTTATTATCTGTGT
AAGCTTGCTTGGAATCTATAACTACCTTGcttcaaaaaatgaaactttta
ttGTAGGCTACTATCAAAATATATTGTATGGCAAATGTTGCGAGATAAAA
TCTCGTTCCTTTCTCAACCATTTCGTGACGCGAGAGCTGCATTCAACAAG
AAGATGACGGGTGTTGAAGATACAGAAGATCGATGGCGTTGGTGTACTTC
GGTCACAAATGATAACATGGGTGTACCTATTGGAACACTTTATGTCAATA
AATACTTCTCCGATGAAACTAAAAATAAGGTATCATCTTCACTTTGCATA
CTtgaagttatttttttctttggtcttagacttttctatttttgtatctt
ttttcaACTCACCTGAGACTCACGGAGCTGAAAAAGCATCCTGTCTAGTG
GCACAATTGTATTCTCTTTTTTAAATTAACATTCTACTTTTTGGGGTTAG
AATATAAGTAAATTTTGACCAGAGGGCACGAAAAAAGGATCCCCTCCGCT
CTTGGGGTGATCTCGCACATTCACAGCAACCAATGCATTTTGTCTTTAAA
ATTTCTGTCACTATTATTCATTTTTAGACTCAAGTCATGGTTGATGAAGT
CATAGATGCATTTATAAGACGTATCAAAAATAACCATACGTGGATTGATA
ATACGACAAAAGAACACGTCATTGCTAAGGTTAGTTAAAAAACTTAATTG
cttgaaaataaatattcttTGTTCAAATCCGCAACGTACCTCAGCCCctg
ggggggtactacccttgccgactgacgggggtgctccgctgaggttcgaa
aaatggaccctatgcgggactcgttttttcaaaaatgttgacgaaatttg
cgaaaaaaatgaccctgaatgggactgaaattcctaaattttctcaaatt
ttctactttttcccaaaaattttcaaaaaaggcaccctaggagggactga
tttttctattatgGTGTTTTTGCgtccctacctgggactcgtggaggtta
aaaaaggtaccctgaccagcggcgcatccccgtaacccagcCATTACAAC
AAGGCATCATTGTTACTGCATAATGATCTAATAAGTAAGTAATGAATTTA
TTTGTCTTAATAAGCGAGACGAGCGACCACACTCGTGGACATAAAGCTAA
ACTAACGAGGTGGCCGCACGCtactgttacaagaaaaatcgtTTTTAAGA
TCTTACTAGgatacattgaaaataaatttttaaaataaaatagcaataaa
gaaatgaaaattcagAACCAAACTCGAAAATCGtaaaaataaagtaaatg
aggagaggaaatataattttgttaaatCTTTAAGATGATCCAATGTTAGT
GTAGAGATGTCGTCGAAGAGGAAGAGGTAGCGtgtgatttaaaagtttta
acaaaaaaatgttatttagGTATTTGACAAAGTCAAAAAAGGAAAGAAGT
TTCAAATCCAAAAGAAGGGGAAAAGAATGTGCACGAAAATCAGAGACGGA
CATAATTCTAAGAGCTTGCTTCTGGAGAATAAGAACTCGTTGAGCATAAC
TCTCAGATATATTATAAGTTCTTTTATATTTCCTTTTTAAGGCGAACGCT
ATGGTGGCCAAACTTGGACATGcgacatatataaaaaatatcactGCTCT
AAATATACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013251XLOC_013251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023581-exon-sc0000456-1491911889:259636..259746TCONS_00023581-exon-sc0000456-1491911889:259636..259746Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1510915933:259636..259746TCONS_00023581-exon-sc0000456-1510915933:259636..259746Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1575043694:259636..259746TCONS_00023581-exon-sc0000456-1575043694:259636..259746Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1491911889:260098..260178TCONS_00023581-exon-sc0000456-1491911889:260098..260178Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1510915933:260098..260178TCONS_00023581-exon-sc0000456-1510915933:260098..260178Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1575043694:260098..260178TCONS_00023581-exon-sc0000456-1575043694:260098..260178Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1491911889:260636..260766TCONS_00023581-exon-sc0000456-1491911889:260636..260766Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1510915933:260636..260766TCONS_00023581-exon-sc0000456-1510915933:260636..260766Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1575043694:260636..260766TCONS_00023581-exon-sc0000456-1575043694:260636..260766Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1491911889:260992..261214TCONS_00023581-exon-sc0000456-1491911889:260992..261214Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1510915933:260992..261214TCONS_00023581-exon-sc0000456-1510915933:260992..261214Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1575043694:260992..261214TCONS_00023581-exon-sc0000456-1575043694:260992..261214Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1491911889:261513..261614TCONS_00023581-exon-sc0000456-1491911889:261513..261614Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1510915933:261513..261614TCONS_00023581-exon-sc0000456-1510915933:261513..261614Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1575043694:261513..261614TCONS_00023581-exon-sc0000456-1575043694:261513..261614Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1491911889:262527..262596TCONS_00023581-exon-sc0000456-1491911889:262527..262596Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1510915933:262527..262596TCONS_00023581-exon-sc0000456-1510915933:262527..262596Clytia hemisphaericaexon
TCONS_00023581-exon-sc0000456-1575043694:262527..262596TCONS_00023581-exon-sc0000456-1575043694:262527..262596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:259636..262596 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05511	0.880531	0.402573	0	0.0939876	0	15.6277	16.5971	9.19231	4.90699	2.44089	4.37162	13.0532	9.4934	5.00766	19.272	11.7332	10.937	0.422413	0.142599	8.95146	8.14202	6.29859	6.28518	11.1401	14.1976	0	0.172042	0	0
Blast
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BLAST of TCONS_00023581 vs. Swiss-Prot (Human)
Match: PHEX (Phosphate-regulating neutral endopeptidase OS=Homo sapiens GN=PHEX PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.958e-24
Identity = 66/239 (27.62%), Postives = 122/239 (51.05%), Query Frame = 1 
Query:   13 KYMTKVAQHLGYTCDTVXXXXXXXXXXXXXXAKLTTPAEAKQA-GTFRRININILGKCISQFPWYEHIKAI-----FPKSANIKRDDVVLATSPQYLYNVASLITSVDKKLLSKYIVWQMLRDKISFLSQPFRDARAAFNKKMTGVEDTEDRWRWCTSVTNDNMGVPIGTLYVNKYFSDETKNKTQVMVDEVIDAFIRRIKNNHTWIDNTTKEHVIAKANAMVAKLGHATYIKNITALN 711
            K+M   A  LG      E ++  +L  E K+A++  P E + +   + ++NI+ L   I QF W  +IK +     +P   +I   + V+   PQY  ++  ++ S  KK ++ Y+VW+M+  +I  LS+ F+     F++ + G      +W  C +     +   +G ++V+ YF ++ K   + +V+ V  AFI  ++  + W+D  TK     KA A++AK+G+  +I N T +N
Sbjct:  251 KFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISELSAMIPQFDWLGYIKKVIDTRLYPHLKDISPSENVVVRVPQYFKDLFRILGSERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESALPYVVGKMFVDVYFQEDKKEMMEELVEGVRWAFIDMLEKENEWMDAGTKRKAKEKARAVLAKVGYPEFIMNDTHVN 489
The following BLAST results are available for this feature:
BLAST of TCONS_00023581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHEX9.958e-2427.62Phosphate-regulating neutral endopeptidase OS=Homo... [more]
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