TCONS_00023570 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023570
Unique Name	TCONS_00023570
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1564

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000456:200503..203201+
coding sequence from alignment at sc0000456:200503..203201+

transcript sequence

>TCONS_00023570 ID=TCONS_00023570|Name=TCONS_00023570|organism=Clytia hemisphaerica|type=transcript|length=1564bp
TGCCCTCGTTTTTCTTCTTGTGAAAAGTTTTGTGATGCAAGCTGAAAATA
CGACGACTTGACTTCACAAGGTTAGAGAAAGGAGAGGTGTGTGCGAAAGC
AACATGTCGTGGCAACTAcacaaagttttgattttgcaTCTTTTACTGAC
TATCACCACCTTAAAAGCATTAAATGTCGAGAAAAACATCGAGAAGAGAA
CCAGAAAGATTAATttggatgaaaatgaaaagaatttatTAAAGGTCATG
GATGATTCGTTGAAGAACGAGATCGTGTTAGACGCACTGCATTCCAACTT
ATACGACAAAGTGTTTGACGCGACGAAAGGAGAGCAAAGCAAAGAGAAGA
AAGAGAGTAAAAGTGAAAaggagaaagaagaaaagatggAGAAATTATTT
GAATCATAtgtcaaagaaaaacaaaaagaaaaatcaaaaggaactaGGGA
CGAGCCACGCGAATTGATCGATCCGAAAACTCTTTATGAAAGTCAACGAG
AATCTCCACCAGATGTGGACGATCTTGATGAGGACGAGATGCCTCACCAC
AAACAACAACCATCACTCATCACCAAAGATGAAGGTCTTCACCAGAGTGT
TTCGAGAGAACTGAAAGACATTCTCATCCACCATGAAGATGAAATTGACG
AAGATGAAAGAGATTATGAAGTTGATGAAGGACTGTTGGAAGATGAAGAA
TTTGTTGatcgaaaattgaaaagaattgCCAAAAAAGatCCATTCTGGTT
TTGGCGCCGTCGACGTCGATCGCATGCTGCAACAACAACCACAATAGTAC
CGTCTCATTATGGTTCTCATTCTTCTTATTATTATGGTAAAAAGGATGCT
CTCATCAAAAGACTCAGAAGAGGGAGGAGAAGatattaaaaagatttttg
gaaaGATTTGGACTGgagaaaattgtatattttatcATATACATGAGAGT
TGTTGGAGTATATTTAttgactaatatttttatatagtGTTATTGCGACA
TAGatttatttattgaaattcaaaaaatataaatttagtTCTTGAAGGTG
AAAAGTTACAAATcagatacacccccttctcactgaCCCGGTAGGCCTat
ttcagccagtggggtaaAAAGTAGCGGACCAAATCTCAACGGgggttgat
attcccatgttttttatggggatttgaattccattctTTGTGGAAAATGT
GGAAAAATAGCACATTGTTTTGCAGTGAGAATTTGCTAATTTTTTCAGTT
GGACAAAGATTAGAGGATAATTTCTCACTGGGGACGATATgttgaccaat
ttttccagttggaAAGGGTCCAAGtgggtctttgagaaggggTGTTTTGA
TCAAAATATCGACGAAAGAGTTTATAATGATTTCTCTGTTTCAAATATTC
CGCAACCCCTTTCCCTGCATTGGTAAAACTTTTAGTCTCTCTGATTTGAT
CTCGAAGTTGACTAACATGGAAAAAGATCgaaatatttgctttaaaaaag
atAATCAACCTGGCATCCGAAATGTGGAAATTGTGAGGcatctttttatt
tgtttttgaaaggG

Run BLAST on NCBI

protein sequence of TCONS_00023570-protein

>TCONS_00023570-protein ID=TCONS_00023570-protein|Name=TCONS_00023570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MSWQLHKVLILHLLLTITTLKALNVEKNIEKRTRKINLDENEKNLLKVMD
DSLKNEIVLDALHSNLYDKVFDATKGEQSKEKKESKSEKEKEEKMEKLFE
SYVKEKQKEKSKGTRDEPRELIDPKTLYESQRESPPDVDDLDEDEMPHHK
QQPSLITKDEGLHQSVSRELKDILIHHEDEIDEDERDYEVDEGLLEDEEF
VDRKLKRIAKKDPFWFWRRRRRSHAATTTTIVPSHYGSHSSYYYGKKDAL
IKRLRRGRRRY

Run BLAST on NCBI

transcript from alignment at sc0000456:200503..203201+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023570 ID=TCONS_00023570|Name=TCONS_00023570|organism=Clytia hemisphaerica|type=transcript|length=2699bp|location=Sequence derived from alignment at sc0000456:200503..203201+ (Clytia hemisphaerica)
TGCCCTCGTTTTTCTTCTTGTGAAAAGTTTTGTGATGCAAGCTGAAAATA
CGACGACTTGACTTCACAAGGTTAGAGAAAGGAGAGGTGTGTGCGAAAGC
AACATGTCGTGGCAACTAcacaaagttttgattttgcaTCTTTTACTGAC
TATCACCACCTTAAAAGCATTAAATGTCGAGAAAAACATCGAGAAGAGAA
CCAGAAAGATTAATttggatgaaaatgaaaagaatttatTAAAGGTCATG
GATGGTAAGTAGATTTGCTCAGACTAAGAGGAGGAGAGTGACCAGATTTC
TTCCATACGAACATTTACCTCAGAATTTTTCTCCCTAAGGTATGGTTCAA
AAAGCTTGTGTCTGTTATGTATCTTTTTATTTGGTTGCCGTTGTCCGGTT
TGGTAACATAATCCAGGCAGGGGCATCTAACAATGGTAAATCTATCTGAA
TCGCAATATTTTCTTGAGCTGCAAAAATTCACATCTTGTAAGACTTTAAA
ACATGCTTAAACATCTTTTTCAGATTCGTTGAAGAACGAGATCGTGTTAG
ACGCACTGCATTCCAACTTATACGACAAAGTGTTTGACGCGACGAAAGGA
GAGCAAAGCAAAGAGAAGAAAGAGAGTAAAAGTGAAAaggagaaagaaga
aaagatggAGAAATTATTTGAATCATAtgtcaaagaaaaacaaaaagaaa
aatcaaaaggaactaGGGACGAGCCACGCGAATTGATCGATCCGAAAACT
CTTTATGAAAGTAAGTGGTACAGTTTGTATTTCTTGGACTAAGATTCCAC
TTTCATACCAAGCAAAAGGTCTCGGTGAGtcgaaaatgtttttgtttcgt
tGCTAACGAGTCTATTGTGTGTACTATTTTCAGTCGGGTATTGTAAGAAA
TAGTTCCAGAAGAGTTCCGGAGAAGTCGATCCAGTCTGGGAAAGACAAAT
TTAACTTATTTCGATATTCTAATTTGAACCTCGTATGCAGCTGAGTCGAT
CAGTTATGAGTGattcaacttcaaaaatcagaaattcTATATTTGTAGGC
GAAGCTAGGTTGGATAAATTATCTTCAAAGACTCGagagttctcttttct
ttcGGTAAGGTCAACGAGAATCTCCACCAGATGTGGACGATCTTGATGAG
GACGAGATGCCTCACCACAAACAACAACCATCACTCATCACCAAAGATGA
AGGTCTTCACCAGAGTGTTTCGAGAGAACTGAAAGACATTCTCATCCACC
ATGAAGATGAAATTGACGAAGATGAAAGAGATTATGAAGTTGATGAAGGA
CTGTTGGAAGATGAAGAATTTGTTGatcgaaaattgaaaagaattgCCAA
AAAAGGTGAGCatgttaaaatagaaatacgTACCTAAATCGcgtgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
tttagatCCATTCTGGTTTTGGCGCCGTCGACGTCGATCGCATGCTGCAA
CAACAACCACAATAGTACCGTCTCATTATGGTTCTCATTCTTCTTATTAT
TATGGTAAAAAGGATGCTCTCATCAAAAGACTCAGAAGAGGGTAactata
tattttcattttgtggTCATCAAAAGGTCAACGTAATCTTGATTTAgctt
gaattttgaaagatgCTTTATGAAAAATTATTCGTTGATCTTTTCATCTT
ATCTCTTGGAACCTGATTCCCTTTGAGCTATAAAATAGAGAAATAAACCT
AATTCAGAACCCTTTATAACTGACAGGGCAATCCCTTAGAGAGTAGCATT
TACAGTTTCGGGAAAATTAGCCAAACCCAAATTTTTCCACTTCCATGGCA
AAGTATTTCGATACGAAATAGTTTCAAAACAAGTTTCATCATCGtgactt
tttgggaaaatcaaatttattgaacATATGCATATTTCCCACCGTGAATT
TAACCAAAAACAATTATCTTTAAGTCTTTAACACTATTTTCACTATCTAA
TTTTATAGGAGGAGAAGatattaaaaagatttttggaaaGATTTGGACTG
gagaaaattgtatattttatcATATACATGAGAGTTGTTGGAGTATATTT
AttgactaatatttttatatagtGTTATTGCGACATAGatttatttattg
aaattcaaaaaatataaatttagtTCTTGAAGGTGAAAAGTTACAAATca
gatacacccccttctcactgaCCCGGTAGGCCTatttcagccagtggggt
aaAAAGTAGCGGACCAAATCTCAACGGgggttgatattcccatgtttttt
atggggatttgaattccattctTTGTGGAAAATGTGGAAAAATAGCACAT
TGTTTTGCAGTGAGAATTTGCTAATTTTTTCAGTTGGACAAAGATTAGAG
GATAATTTCTCACTGGGGACGATATgttgaccaatttttccagttggaAA
GGGTCCAAGtgggtctttgagaaggggTGTTTTGATCAAAATATCGACGA
AAGAGTTTATAATGATTTCTCTGTTTCAAATATTCCGCAACCCCTTTCCC
TGCATTGGTAAAACTTTTAGTCTCTCTGATTTGATCTCGAAGTTGACTAA
CATGGAAAAAGATCgaaatatttgctttaaaaaagatAATCAACCTGGCA
TCCGAAATGTGGAAATTGTGAGGcatctttttatttgtttttgaaaggG

Coding sequence (CDS) from alignment at sc0000456:200503..203201+

>TCONS_00023570 ID=TCONS_00023570|Name=TCONS_00023570|organism=Clytia hemisphaerica|type=CDS|length=3930bp|location=Sequence derived from alignment at sc0000456:200503..203201+ (Clytia hemisphaerica)
ATGTCGTGGCAACTAcacaaagttttgattttgcaTCTTTTACTGACTAT
CACCACCTTAAAAGCATTAAATGTCGAGAAAAACATCGAGAAGAGAACCA
GAAAGATTAATttggatgaaaatgaaaagaatttatTAAAGGTCATGGAT
GATTCGTTGAAGAACGAGATCGTGTTAGACGCACTGCATTCCAACTTATA
CGACAAAGTGTTTGACGCGACGAAAGGAGAGCAAAGCAAAGAGAAGAAAG
AGAGTAAAAGTGAAAaggagaaagaagaaaagatggAGAAATTATTTGAA
TCATAtgtcaaagaaaaacaaaaagaaaaatcaaaaggaactaGGGACGA
GCCACGCGAATTGATCGATCCGAAAACTCTTTATGAAAGTCAACGAGAAT
CTCCACCAGATGTGGACGATCTTGATGAGGACGAGATGCCTCACCACAAA
CAACAACCATCACTCATCACCAAAGATGAAGGTCTTCACCAGAGTGTTTC
GAGAGAACTGAAAGACATTCTCATCCACCATGAAGATGAAATTGACGAAG
ATGAAAGAGATTATGAAGTTGATGAAGGACTGTTGGAAGATGAAGAATTT
GTTGatcgaaaattgaaaagaattgCCAAAAAAGatCCATTCTGGTTTTG
GCGCCGTCGACGTCGATCGCATGCTGCAACAACAACCACAATAGTACCGT
CTCATTATGGTTCTCATTCTTCTTATTATTATGGTAAAAAGGATGCTCTC
ATCAAAAGACTCAGAAGAGGGAGGAGAAGatattaaATGTCGTGGCAACT
AcacaaagttttgattttgcaTCTTTTACTGACTATCACCACCTTAAAAG
CATTAAATGTCGAGAAAAACATCGAGAAGAGAACCAGAAAGATTAATttg
gatgaaaatgaaaagaatttatTAAAGGTCATGGATGATTCGTTGAAGAA
CGAGATCGTGTTAGACGCACTGCATTCCAACTTATACGACAAAGTGTTTG
ACGCGACGAAAGGAGAGCAAAGCAAAGAGAAGAAAGAGAGTAAAAGTGAA
AaggagaaagaagaaaagatggAGAAATTATTTGAATCATAtgtcaaaga
aaaacaaaaagaaaaatcaaaaggaactaGGGACGAGCCACGCGAATTGA
TCGATCCGAAAACTCTTTATGAAAGTCAACGAGAATCTCCACCAGATGTG
GACGATCTTGATGAGGACGAGATGCCTCACCACAAACAACAACCATCACT
CATCACCAAAGATGAAGGTCTTCACCAGAGTGTTTCGAGAGAACTGAAAG
ACATTCTCATCCACCATGAAGATGAAATTGACGAAGATGAAAGAGATTAT
GAAGTTGATGAAGGACTGTTGGAAGATGAAGAATTTGTTGatcgaaaatt
gaaaagaattgCCAAAAAAGatCCATTCTGGTTTTGGCGCCGTCGACGTC
GATCGCATGCTGCAACAACAACCACAATAGTACCGTCTCATTATGGTTCT
CATTCTTCTTATTATTATGGTAAAAAGGATGCTCTCATCAAAAGACTCAG
AAGAGGGAGGAGAAGatattaaATGTCGTGGCAACTAcacaaagttttga
ttttgcaTCTTTTACTGACTATCACCACCTTAAAAGCATTAAATGTCGAG
AAAAACATCGAGAAGAGAACCAGAAAGATTAATttggatgaaaatgaaaa
gaatttatTAAAGGTCATGGATGATTCGTTGAAGAACGAGATCGTGTTAG
ACGCACTGCATTCCAACTTATACGACAAAGTGTTTGACGCGACGAAAGGA
GAGCAAAGCAAAGAGAAGAAAGAGAGTAAAAGTGAAAaggagaaagaaga
aaagatggAGAAATTATTTGAATCATAtgtcaaagaaaaacaaaaagaaa
aatcaaaaggaactaGGGACGAGCCACGCGAATTGATCGATCCGAAAACT
CTTTATGAAAGTCAACGAGAATCTCCACCAGATGTGGACGATCTTGATGA
GGACGAGATGCCTCACCACAAACAACAACCATCACTCATCACCAAAGATG
AAGGTCTTCACCAGAGTGTTTCGAGAGAACTGAAAGACATTCTCATCCAC
CATGAAGATGAAATTGACGAAGATGAAAGAGATTATGAAGTTGATGAAGG
ACTGTTGGAAGATGAAGAATTTGTTGatcgaaaattgaaaagaattgCCA
AAAAAGatCCATTCTGGTTTTGGCGCCGTCGACGTCGATCGCATGCTGCA
ACAACAACCACAATAGTACCGTCTCATTATGGTTCTCATTCTTCTTATTA
TTATGGTAAAAAGGATGCTCTCATCAAAAGACTCAGAAGAGGGAGGAGAA
GatattaaATGTCGTGGCAACTAcacaaagttttgattttgcaTCTTTTA
CTGACTATCACCACCTTAAAAGCATTAAATGTCGAGAAAAACATCGAGAA
GAGAACCAGAAAGATTAATttggatgaaaatgaaaagaatttatTAAAGG
TCATGGATGATTCGTTGAAGAACGAGATCGTGTTAGACGCACTGCATTCC
AACTTATACGACAAAGTGTTTGACGCGACGAAAGGAGAGCAAAGCAAAGA
GAAGAAAGAGAGTAAAAGTGAAAaggagaaagaagaaaagatggAGAAAT
TATTTGAATCATAtgtcaaagaaaaacaaaaagaaaaatcaaaaggaact
aGGGACGAGCCACGCGAATTGATCGATCCGAAAACTCTTTATGAAAGTCA
ACGAGAATCTCCACCAGATGTGGACGATCTTGATGAGGACGAGATGCCTC
ACCACAAACAACAACCATCACTCATCACCAAAGATGAAGGTCTTCACCAG
AGTGTTTCGAGAGAACTGAAAGACATTCTCATCCACCATGAAGATGAAAT
TGACGAAGATGAAAGAGATTATGAAGTTGATGAAGGACTGTTGGAAGATG
AAGAATTTGTTGatcgaaaattgaaaagaattgCCAAAAAAGatCCATTC
TGGTTTTGGCGCCGTCGACGTCGATCGCATGCTGCAACAACAACCACAAT
AGTACCGTCTCATTATGGTTCTCATTCTTCTTATTATTATGGTAAAAAGG
ATGCTCTCATCAAAAGACTCAGAAGAGGGAGGAGAAGatattaaATGTCG
TGGCAACTAcacaaagttttgattttgcaTCTTTTACTGACTATCACCAC
CTTAAAAGCATTAAATGTCGAGAAAAACATCGAGAAGAGAACCAGAAAGA
TTAATttggatgaaaatgaaaagaatttatTAAAGGTCATGGATGATTCG
TTGAAGAACGAGATCGTGTTAGACGCACTGCATTCCAACTTATACGACAA
AGTGTTTGACGCGACGAAAGGAGAGCAAAGCAAAGAGAAGAAAGAGAGTA
AAAGTGAAAaggagaaagaagaaaagatggAGAAATTATTTGAATCATAt
gtcaaagaaaaacaaaaagaaaaatcaaaaggaactaGGGACGAGCCACG
CGAATTGATCGATCCGAAAACTCTTTATGAAAGTCAACGAGAATCTCCAC
CAGATGTGGACGATCTTGATGAGGACGAGATGCCTCACCACAAACAACAA
CCATCACTCATCACCAAAGATGAAGGTCTTCACCAGAGTGTTTCGAGAGA
ACTGAAAGACATTCTCATCCACCATGAAGATGAAATTGACGAAGATGAAA
GAGATTATGAAGTTGATGAAGGACTGTTGGAAGATGAAGAATTTGTTGat
cgaaaattgaaaagaattgCCAAAAAAGatCCATTCTGGTTTTGGCGCCG
TCGACGTCGATCGCATGCTGCAACAACAACCACAATAGTACCGTCTCATT
ATGGTTCTCATTCTTCTTATTATTATGGTAAAAAGGATGCTCTCATCAAA
AGACTCAGAAGAGGGAGGAGAAGatattaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013245	XLOC_013245	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023570-protein	TCONS_00023570-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000456	supercontig	sc0000456:200503..203201 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
230.979	209.382	32.6456	11.2554	0.616439	0.473344	0	0.252113	0.0882551	0.779795	0.0265267	0.045934	0.0348268	0.018084	0.0594699	0.0319102	0.0589661	0	0	0.0582503	1.1002	0.822761	147.093	113.305	0	0	6.52594	9.35643	73.8482	90.2609

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023570 vs. Swiss-Prot (Human)

BLAST of TCONS_00023570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023570 (transcript) - C. hemisphaerica