|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023537 ID=TCONS_00023537|Name=TCONS_00023537|organism=Clytia hemisphaerica|type=transcript|length=1689bp
ttttttcagatCATGCCTTCTCAGGACGCTCTCCACTGGATTTGAAACAT
TTAACGAAAAGTGATCGGTATTAGATAGttgccaaaaatattttttatga
aacttACATTTTTAACACAACACCTTTCATATATCAGATCTAAAGAAAAG
AGTATACGTGATAGACAGGAACCAAAACTGGATGGaatttatcatatttt
catttAAATAATCAGGAAATGGCATCAAATGATTGGTTGATTCTCCAGCT
CATCTTCAGTACGGCCGTTATATTGATTAACATTATTCTCTTCCATTTTC
TAAATGCTCGAGTACCGTCTTCCGCTCAAAATCTCATTTCACCACCACAC
ATACCTAACGAATTGCACACAATAAAGAAATTTGGTAACAGTTTATCTCT
TTTGAATGTGTTAAGTGGTGCTTGCTTGCTCGTTACCGCTATAGTTACTT
TGATAACCTATCACTTATCTGGCTATTATCCATACATGGGGCTCGCAGAA
ACGTTCATTCTAGCAATGACTGTTATCAGTACTATGTTTCACCTGTTGAG
TATCATGGTGAACGACTTTAAAATTTCGTGCCGAGATGACGTTCTACCCG
AAGAAAATAATTTCTACATCGCTCTAACGTGGATCTCGACCCTTGTTTGC
ACTTTCCTGCTATTTTTCGTGTATCTGGAACACGAAATCACCCTGATATT
CAGTTGTATTATCTTGGTCACAGACTTCTTCTTGCTTGCATGTTACATAG
ATATCACACGACGTACAATCATTAACCGGCGTATGGAAGTTCGCGAGAAA
CACTCGAACGACCTTTCAAGTGACACGATTTGTAGAGTTCACGCGCATCT
TTTACACGACTCGTCACACTTTcatcaactttttttaggtaTTCTATTGA
CTAgctctttcattttatttacaaTACCATTCTCGTTGGAGCGATTAATA
TGGCACCAAAATCAGTTGGTTTCTTATGTTTGTGTGACCTTCAATTCTAT
CTCACAAGCTGTTATTTTAGCAGTACGAATAAACATGAAGTAAATATCAT
GAAATTCAACGTGTAAGGGTAACCAGAGGATTACCAGGTGAATTGATGTA
ATGGATTTAGAAAtgctatttctttttttaatatgtATAgtactgttttt
atttttctaacatATAACTATTTTGAAGGAATATTTATTTACAAGAGCAA
TAATGACATAACATCTGTGTTAAAAGTACGAAAGGCCATCTTGAATCGAG
TTCCAACACAGCAGAGTATATCAGACATATTCTTTGAAGATTCTTTGCCT
TCTTTTCTCTTTTGCTTTCTATTTAGTTTTTCACTAAGTAATACCCTGTG
AACACGTCATCTCAAGTTCTTAGTTCGAACCGGCATTTTCTCTCCATCAA
TTTTCTTGCAACATATTCACGTCGTTTCGTTTTATCTGTTGGATGTAGTA
AACAAATTCGTTTAGCTATCCTCAATCTTGCCATATATCCTAAAAATTAG
AGAAACATGAGAATTTGAACCATTCATTCAAAAATTTAGTAGATTTAGCT
GATAAGGATTTTTGTGCTGATTtcagtggggggcgtacggtatttcggaa
ttgcggaaatctaccttttttgctaaatttcggtattacaaagtttttat
ccccctttttcggaatccatacatgaaaaatcaaatttg Run BLAST on NCBI transcript from alignment at sc0000456:20275..22435+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023537 ID=TCONS_00023537|Name=TCONS_00023537|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at sc0000456:20275..22435+ (Clytia hemisphaerica)
ttttttcagatCATGCCTTCTCAGGACGCTCTCCACTGGATTTGAAACAT
TTAACGAAAAGTGATCGGTATTAGATAGttgccaaaaatattttttatga
aacttACATTTTTAACACAACACCTTTCATATATCAGATCTAAAGAAAAG
AGTATACGTGATAGACAGGTATGTTACTTTCATTTCCCATGATAAGCACC
AGAGGCTCGGATTTTAAAAGGACACCCCTGTCTAGGTGACCTGATCAGAA
TTTATTTATCTAACGGACCCGTGATAtacatacactcttttttataagaa
ccagtaaattttttttcttcatttttttgcaCTTAGAGCCCAAAACTATT
CTTGTTCTTCTGTTTGGGCAATTTGAAGTATTTCAGGCACGACCTTGTAT
CAGTAATCCGGATAACCCGGTGAAAAATAAGTGTAGGGTCGGTGGCAGTT
CTGGTGTAGGGATAGATGTTTCTTCCTTTTGAAGATGCAATCATGTTCTG
ATTTCATACATTACAGGTTTgacttttaaattaaattttcaaacaagcGT
TTCTTTGCTGGATGTTTCTTGACTTGTAAGGGAACGTATTGAAATTTCTT
CTCGGTGACTTATTCTCATACAAAATCGTTATCTTTTCAGGAACCAAAAC
TGGATGGaatttatcatattttcatttAAATAATCAGGAAATGGCATCAA
ATGATTGGTTGATTCTCCAGCTCATCTTCAGTACGGCCGTTATATTGATT
AACATTATTCTCTTCCATTTTCTAAATGCTCGAGTACCGTCTTCCGCTCA
AAATCTCATTTCACCACCACACATACCTAACGAATTGCACACAATAAAGA
AATTTGGTAACAGTTTATCTCTTTTGAATGTGTTAAGTGGTGCTTGCTTG
CTCGTTACCGCTATAGTTACTTTGATAACCTATCACTTATCTGGCTATTA
TCCATACATGGGGCTCGCAGAAACGTTCATTCTAGCAATGACTGTTATCA
GTACTATGTTTCACCTGTTGAGTATCATGGTGAACGACTTTAAAATTTCG
TGCCGAGATGACGTTCTACCCGAAGAAAATAATTTCTACATCGCTCTAAC
GTGGATCTCGACCCTTGTTTGCACTTTCCTGCTATTTTTCGTGTATCTGG
AACACGAAATCACCCTGATATTCAGTTGTATTATCTTGGTCACAGACTTC
TTCTTGCTTGCATGTTACATAGATATCACACGACGTACAATCATTAACCG
GCGTATGGAAGTTCGCGAGAAACACTCGAACGACCTTTCAAGTGACACGA
TTTGTAGAGTTCACGCGCATCTTTTACACGACTCGTCACACTTTcatcaa
ctttttttaggtaTTCTATTGACTAgctctttcattttatttacaaTACC
ATTCTCGTTGGAGCGATTAATATGGCACCAAAATCAGTTGGTTTCTTATG
TTTGTGTGACCTTCAATTCTATCTCACAAGCTGTTATTTTAGCAGTACGA
ATAAACATGAAGTAAATATCATGAAATTCAACGTGTAAGGGTAACCAGAG
GATTACCAGGTGAATTGATGTAATGGATTTAGAAAtgctatttctttttt
taatatgtATAgtactgtttttatttttctaacatATAACTATTTTGAAG
GAATATTTATTTACAAGAGCAATAATGACATAACATCTGTGTTAAAAGTA
CGAAAGGCCATCTTGAATCGAGTTCCAACACAGCAGAGTATATCAGACAT
ATTCTTTGAAGATTCTTTGCCTTCTTTTCTCTTTTGCTTTCTATTTAGTT
TTTCACTAAGTAATACCCTGTGAACACGTCATCTCAAGTTCTTAGTTCGA
ACCGGCATTTTCTCTCCATCAATTTTCTTGCAACATATTCACGTCGTTTC
GTTTTATCTGTTGGATGTAGTAAACAAATTCGTTTAGCTATCCTCAATCT
TGCCATATATCCTAAAAATTAGAGAAACATGAGAATTTGAACCATTCATT
CAAAAATTTAGTAGATTTAGCTGATAAGGATTTTTGTGCTGATTtcagtg
gggggcgtacggtatttcggaattgcggaaatctaccttttttgctaaat
ttcggtattacaaagtttttatccccctttttcggaatccatacatgaaa
aatcaaatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023537-exon-sc0000456-1491911889:20275..20442 | TCONS_00023537-exon-sc0000456-1491911889:20275..20442 | Clytia hemisphaerica | exon |
| TCONS_00023537-exon-sc0000456-1510915933:20275..20442 | TCONS_00023537-exon-sc0000456-1510915933:20275..20442 | Clytia hemisphaerica | exon |
| TCONS_00023537-exon-sc0000456-1575043694:20275..20442 | TCONS_00023537-exon-sc0000456-1575043694:20275..20442 | Clytia hemisphaerica | exon |
| TCONS_00023537-exon-sc0000456-1491911889:20915..22435 | TCONS_00023537-exon-sc0000456-1491911889:20915..22435 | Clytia hemisphaerica | exon |
| TCONS_00023537-exon-sc0000456-1510915933:20915..22435 | TCONS_00023537-exon-sc0000456-1510915933:20915..22435 | Clytia hemisphaerica | exon |
| TCONS_00023537-exon-sc0000456-1575043694:20915..22435 | TCONS_00023537-exon-sc0000456-1575043694:20915..22435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000456 | supercontig | sc0000456:20275..22435 + |
Blast
The following BLAST results are available for this feature:
|
