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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023522 ID=TCONS_00023522|Name=TCONS_00023522|organism=Clytia hemisphaerica|type=transcript|length=861bp
TGATTTGGGCTAACAAAGTGCTGAAAAATTAACATTCACGTTAAATTTTG
TTCATTTACAGACGGAGAGACATGAAGGAGAAAAAAACATCGAACACgac
taaaaattcaaaatccgaAGgTCATGAAATTGACATACCGTATGATATAC
AAAACCAAGACCCGAATCAATCAACCCGGTTACTCTACACTCCAGAGTTC
CCGAATCACCAGAGCAAACTTAAGAAAGACGGCAAGAATAAAGCATCTAA
TTGGTCTCTTTACTTAGATGCCGGACGAAGAAGTTTAAGTCGGACATCCT
CCCGAACAAGTGGTTTGGCATACTATTCAGATGACCCGGTAAAAGGGACA
GATGGCGAGGTTGCGGTATTTGTGGAAAGTGGAAATCTAACACACCTCCA
TGTCAAACAATCTTTGTTACAGCCAATAAGAAGAGAGAATTCTTTTAATC
CATAACAGAACTTTTGGTGCGACCCTATAAAAGACTTTGGAATTTTGATA
CGATTTAACTCaaactagactagtaaaccacgtcgttgtatttcgctgca
gcttAAGCTTGCAATGGGCTCTGTGTctatgttcactgaatacaatgtct
ttccaaaccactctcccgcggAAATTTctattcttttataagaactcttt
atatAAGCACTATctgcgttcctgtgtccaaggaaagacagacgcttgct
agtctaaaCTCAAACCTGTATAACTCGAATATTATCTTAACTCAACAATA
TTTATGGTCCCTTTGGTTAATACTACTTAATaaatcttactccataactc
gaaatttccataactcgaacagaGATTTGTGTTCCCCgggttcgaattat
ggagagtTAAT Run BLAST on NCBI protein sequence of TCONS_00023522-protein >TCONS_00023522-protein ID=TCONS_00023522-protein|Name=TCONS_00023522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MKEKKTSNTTKNSKSEGHEIDIPYDIQNQDPNQSTRLLYTPEFPNHQSKL
KKDGKNKASNWSLYLDAGRRSLSRTSSRTSGLAYYSDDPVKGTDGEVAVF
VESGNLTHLHVKQSLLQPIRRENSFNP Run BLAST on NCBI transcript from alignment at sc0000455:309112..310420- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023522 ID=TCONS_00023522|Name=TCONS_00023522|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at sc0000455:309112..310420- (Clytia hemisphaerica)
TGATTTGGGCTAACAAAGTGCTGAAAAATTAACATTCACGTTAAATTTTG
TTCATTTACAGACGGAGAGACATGAAGGAGAAAAAAACATCGAACACGAC
TAAAAATTCAAAATCCGAAGGTTAGCATTACTTGCATTTATTCACCTTAT
TCAAAGAGTTACCTTGTATAGCTCTTTGTTATAGCGAGCCTCTCGATACT
AGAATCTGATTTTAAGAACTATATTGCCGCCCGTATAAACGGACAATCGT
CAGCTAAGATGCTCTGATAAATACACCTTTTCAACTGTAACCGTGGTAAG
CCGCCTGCCACGGGCCTGTCACGTGCTTTATTATTTAGTTATCCCCCTAA
ACTCGATCCAATCCTTTTTTTACCCTTTTTTTATAGGTGCGAAAAAAAGA
CTGGGACGGTTTTAGGGTGGTAAAACGGCCAAAAAATGCTCTCGCGCTAA
TTGGCGGCTACGGTCGAAAAGGTGTATTACATTTACAAGTTTTTCTAATG
TATAATTTCACTCGTTCCAGGCCTACAAGTTTTCATGAACGTCATTTATA
AATGTTATATATTTTTAGGTCATGAAATTGACATACCGTATGATATACAA
AACCAAGACCCGAATCAATCAACCCGGTTACTCTACACTCCAGAGTTCCC
GAATCACCAGAGCAAACTTAAGAAAGACGGCAAGAATAAAGCATCTAATT
GGTCTCTTTACTTAGATGCCGGACGAAGAAGTTTAAGTCGGACATCCTCC
CGAACAAGTGGTTTGGCATACTATTCAGATGACCCGGTAAAAGGGACAGA
TGGCGAGGTTGCGGTATTTGTGGAAAGTGGAAATCTAACACACCTCCATG
TCAAACAATCTTTGTTACAGCCAATAAGAAGAGAGAATTCTTTTAATCCA
TAACAGAACTTTTGGTGCGACCCTATAAAAGACTTTGGAATTTTGATACG
ATTTAACTCAAACTAGACTAGTAAACCACGTCGTTGTATTTCGCTGCAGC
TTAAGCTTGCAATGGGCTCTGTGTCTATGTTCACTGAATACAATGTCTTT
CCAAACCACTCTCCCGCGGAAATTTCTATTCTTTTATAAGAACTCTTTAT
ATAAGCACTATCTGCGTTCCTGTGTCCAAGGAAAGACAGACGCTTGCTAG
TCTAAACTCAAACCTGTATAACTCGAATATTATCTTAACTCAACAATATT
TATGGTCCCTTTGGTTAATACTACTTAATAAATCTTACTCCATAACTCGA
AATTTCCATAACTCGAACAGAGATTTGTGTTCCCCGGGTTCGAATTATGG
AGAGTTAAT Coding sequence (CDS) from alignment at sc0000455:309112..310420- >TCONS_00023522 ID=TCONS_00023522|Name=TCONS_00023522|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000455:309112..310420- (Clytia hemisphaerica)
GTCATGAAATTGACATACCGTATGATATACAAAACCAAGACCCGAATCAA
TCAACCCGGTTACTCTACACTCCAGAGTTCCCGAATCACCAGAGCAAACT
TAAGAAAGACGGCAAGAATAAAGCATCTAATTGGTCTCTTTACTTAGATG
CCGGACGAAGAAGTTTAAGTCGGACATCCTCCCGAACAAGTGGTTTGGCA
TACTATTCAGATGACCCGGTAAAAGGGACAGATGGCGAGGTTGCGGTATT
TGTGGAAAGTGGAAATCTAACACACCTCCATGTCAAACAATCTTTGTTAC
AGCCAATAAGAAGAGAGAATTCTTTTAATCCATAAATGAAGGAGAAAAAA
ACATCGAACACGACTAAAAATTCAAAATCCGAAGGTCATGAAATTGACAT
ACCGTATGATATACAAAACCAAGACCCGAATCAATCAACCCGGTTACTCT
ACACTCCAGAGTTCCCGAATCACCAGAGCAAACTTAAGAAAGACGGCAAG
AATAAAGCATCTAATTGGTCTCTTTACTTAGATGCCGGACGAAGAAGTTT
AAGTCGGACATCCTCCCGAACAAGTGGTTTGGCATACTATTCAGATGACC
CGGTAAAAGGGACAGATGGCGAGGTTGCGGTATTTGTGGAAAGTGGAAAT
CTAACACACCTCCATGTCAAACAATCTTTGTTACAGCCAATAAGAAGAGA
GAATTCTTTTAATCCATAAATGAAGGAGAAAAAAACATCGAACACGACTA
AAAATTCAAAATCCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023522-exon-sc0000455-1575043694:310301..310420 | TCONS_00023522-exon-sc0000455-1575043694:310301..310420 | Clytia hemisphaerica | exon |
| TCONS_00023522-exon-sc0000455-1575043694:309112..309852 | TCONS_00023522-exon-sc0000455-1575043694:309112..309852 | Clytia hemisphaerica | exon |
| TCONS_00023522-exon-sc0000455-1510915933:310301..310420 | TCONS_00023522-exon-sc0000455-1510915933:310301..310420 | Clytia hemisphaerica | exon |
| TCONS_00023522-exon-sc0000455-1510915933:309112..309852 | TCONS_00023522-exon-sc0000455-1510915933:309112..309852 | Clytia hemisphaerica | exon |
| TCONS_00023522-exon-sc0000455-1491911889:310301..310420 | TCONS_00023522-exon-sc0000455-1491911889:310301..310420 | Clytia hemisphaerica | exon |
| TCONS_00023522-exon-sc0000455-1491911889:309112..309852 | TCONS_00023522-exon-sc0000455-1491911889:309112..309852 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000455 | supercontig | sc0000455:309112..310420 - |
Blast
The following BLAST results are available for this feature:
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