TCONS_00023428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023428
Unique NameTCONS_00023428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023428 ID=TCONS_00023428|Name=TCONS_00023428|organism=Clytia hemisphaerica|type=transcript|length=308bp
ATTACATACATTATTAACGCCCCtgttttttagttttgtctAGTTTCCAA
TCTCGGAATATGATGAACCCTcgactgaccgaaattgcaattataaatta
ttgtggaattGAACATGTAAGGCGAATGTTGCACTTTGTTATGCACTGGT
TAGGTTTATTGGTCGGTAGGTTGATGGGTCGGTAGGTTGATGGGTTGGTA
GGTTGATGGGTCGGTAGGTTGATTGATTGGTAGGTCAACAAATTAGATGG
TTGATGGATTGGTAGATTGATGGGTTTGTAGGTTGACAGATTGGTTCGTC
GATGAATT
Run BLAST on NCBI

transcript from alignment at sc0000453:88901..89208

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023428 ID=TCONS_00023428|Name=TCONS_00023428|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0000453:88901..89208 (Clytia hemisphaerica)
AATTCATCGACGAACCAATCTGTCAACCTACAAACCCATCAATCTACCAA
TCCATCAACCATCTAATTTGTTGACCTACCAATCAATCAACCTACCGACC
CATCAACCTACCAACCCATCAACCTACCGACCCATCAACCTACCGACCAA
TAAACCTAACCAGTGCATAACAAAGTGCAACATTCGCCTTACATGTTCaa
ttccacaataatttataattgcaatttcggtcagtcgAGGGTTCATCATA
TTCCGAGATTGGAAACTagacaaaactaaaaaacaGGGGCGTTAATAATG
TATGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013179XLOC_013179Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023428-exon-sc0000453-1491911889:88901..89208TCONS_00023428-exon-sc0000453-1491911889:88901..89208Clytia hemisphaericaexon
TCONS_00023428-exon-sc0000453-1510915933:88901..89208TCONS_00023428-exon-sc0000453-1510915933:88901..89208Clytia hemisphaericaexon
TCONS_00023428-exon-sc0000453-1575043694:88901..89208TCONS_00023428-exon-sc0000453-1575043694:88901..89208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000453supercontigsc0000453:88901..89208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05654	3.14339	10.7197	6.94273	2.89802	1.85002	3.22333	3.44333	0.301818	5.00141	2.17721	2.35041	1.50788	5.00664	1.73538	1.39147	1.8821	1.69511	0	1.59365	2.77034	5.06729	1.64265	0.746705	3.32917	4.46156	3.92891	1.04826	2.3852	2.51355
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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