TCONS_00023384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023384
Unique NameTCONS_00023384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023384 ID=TCONS_00023384|Name=TCONS_00023384|organism=Clytia hemisphaerica|type=transcript|length=509bp
gctataattaccattttcacaagaATGAAACTTCAATCTTAGAACAAGAC
TTTGTAGTGGAGTATATGATTGATTTCTACCGGACATTTAAAAGGACACG
TGGTTTTTATTCTCATGGGTAGTTTGAAGAAGAATTCAACATTATAAAGG
GATATTAgaaaattcttcaagtattatctaatttacatttttttcaattc
ctgCGTGTAGTTTGCACAAGAATAACAGTTCAAACAGAAAATTCTAGTCG
AATTCATCTTATTATTCTCGTGGGTAGAGCAGCCTTAAAAGGGGTTAAAT
AACACTACTTATGTTATGTTCCTAtcgctttttaaaaatttattcctTTA
GGTGAAGAACTTTGACATGATTTTTCCTGTTGGATCGATGAGAAAGAATT
GATTGGcgaagttgatattttttctgaaGGAGAATCAGGATCTgtaattg
aaaatgatttttctagTACAACAGGAAACATGATAAATTCTGTAAAACGT
CAATTAGTG
Run BLAST on NCBI

transcript from alignment at sc0000452:97269..97777

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023384 ID=TCONS_00023384|Name=TCONS_00023384|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0000452:97269..97777 (Clytia hemisphaerica)
CACTAATTGACGTTTTACAGAATTTATCATGTTTCCTGTTGTActagaaa
aatcattttcaattacAGATCCTGATTCTCCttcagaaaaaatatcaact
tcgCCAATCAATTCTTTCTCATCGATCCAACAGGAAAAATCATGTCAAAG
TTCTTCACCTAAaggaataaatttttaaaaagcgaTAGGAACATAACATA
AGTAGTGTTATTTAACCCCTTTTAAGGCTGCTCTACCCACGAGAATAATA
AGATGAATTCGACTAGAATTTTCTGTTTGAACTGTTATTCTTGTGCAAAC
TACACGcaggaattgaaaaaaatgtaaattagataatacttgaagaattt
tcTAATATCCCTTTATAATGTTGAATTCTTCTTCAAACTACCCATGAGAA
TAAAAACCACGTGTCCTTTTAAATGTCCGGTAGAAATCAATCATATACTC
CACTACAAAGTCTTGTTCTAAGATTGAAGTTTCATtcttgtgaaaatggt
aattatagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013152XLOC_013152Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023384-exon-sc0000452-1491911889:97269..97777TCONS_00023384-exon-sc0000452-1491911889:97269..97777Clytia hemisphaericaexon
TCONS_00023384-exon-sc0000452-1510915933:97269..97777TCONS_00023384-exon-sc0000452-1510915933:97269..97777Clytia hemisphaericaexon
TCONS_00023384-exon-sc0000452-1575043694:97269..97777TCONS_00023384-exon-sc0000452-1575043694:97269..97777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:97269..97777 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354777	0.230643	4.44694	5.35407	0.199242	0	0	0.284677	0.0996547	0	0	0	0	0	0.323823	0.0720638	0	0.0909932	0	0	0.228679	0	0	0	0.380909	0.226635	0	0.519174	0.354608	0.401195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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