TCONS_00023368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023368
Unique NameTCONS_00023368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023368 ID=TCONS_00023368|Name=TCONS_00023368|organism=Clytia hemisphaerica|type=transcript|length=909bp
aaaatattgacaagTACGTCAACCACTAGACCTGACGCCGAGGacgtttt
ttcattttcacgcAACTTTAATTATGAATGTCGaaggttttttgaaaaag
gcagAAGAGTACTGTTGAGTTCGGTAAATGATTATAAACGCCAGAACCAA
CGTGTTGAGCGATTCCTCTCGCACAAGATAGCAAGATTCGAACATCACAA
TAAATCACATAGTGATATTTCTCAGAAATATTGAATTCAGACAAAATTAC
ACCAAACAACATGAAGCATAGATTCTTTATCGAAACCGGTTATCAATAAA
CCTATCACCACCATTCACCTCATCTTCTGCACCCGCCTCTGAATTCGATG
CTTTCGTTAAAAAGAACGCCGTACAGCTCGCGCACGCGGCCAAGCAACAC
GTGCACAAACAAATCAATCCCAACATCAGGTAACTGGTTGTGATTACCCA
AAAAGCAAACACGTACACAGTCTTATTACAATAGTTGAATGGTTGATGAG
GCGGAGGCGTGTAATTTGGTTTATATTTGGAATACACCCATATATTTCCC
GCCACGAACCACGTGAATAAAAACAAGTTTAATACGCCGTCAACGAACAA
CCATGCGATTGGACGCTCCTCCTCGTTGCTTTTATCACTTTGAAAGATAT
CTCCGTTATATGTGATTCGCTGAATTATGATGGAGAGCATTTTGATGATA
CCGAACGATCCACCGACAATGAGATAGATCGGAATGAATGGTTCGATCGG
ACAAAAATCTTTGTATGACACTCCTATAGAAATAAAGTTATTACAATTTT
GATTAACATGTTCTAAAGGGGGACCTCTAAAGAGTGGGGAAACCTTTGAA
ACGGACAGCGATTGGCTATATTTATATTGAGATATCTTTGGTATGGCGTG
GTATTTCAG
Run BLAST on NCBI

transcript from alignment at sc0000452:256874..258431-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023368 ID=TCONS_00023368|Name=TCONS_00023368|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at sc0000452:256874..258431- (Clytia hemisphaerica)
AAAATATTGACAAGTACGTCAACCACTAGACCTGACGCCGAGGACGTTTT
TTCATTTTCACGCAACTTTAGTAAGTCTTTTGTAATGTCTATTACTATTG
TAAGTTAATATTTTAAAGAAAGTTTTTTCTAAATTGTTTGGGCCAAAATA
CTAAAATCTTTGCCAGATAAATCTTACGCAAATTGCAGACAGTCTAACCT
TCTAACCTTATCGGACAGTTTGTTTTTTTCTCTAATGCTATACTGGTAGA
TAACGATGCGTAATTTCAAATTAGTCTAAGGGTTTTATATTTCTATTTAA
TAGATTATGAATGTCGAAGGTTTTTTGAAAAAGGCAGAAGAGTACTGTTG
AGTTCGGTAAATGATTATAAACGCCAGAACCAACGTGTTGAGCGATTCCT
CTCGCACAAGGTAATATTATGTTCGAACATCTTTCTTTTGTGATTAAACA
ATATACAAATTGTTATTTTTTAATTAACACATGCGAACCCGGTCAAAATC
TAATGAGCTCCGAGAAAACCAAACTAGTTTTTAAGATGTCGACACCGACA
ACCCGATGTGATTTTTCTTTTTTCATAGCCGGTGAATTTCAAAACTTACC
CTGGTCACTGAGGGTTATCTAGGCCTTAGGTGGTTTTTGATGAATGTTTG
ATGAATGTTGTATGAATCTAAGAACTTTTGACCCCGTGAAAGGTTATTAC
GTCATAAATTAATCAATTAATAAAAAACCTTATTTGATTATCTCTATCCT
GCCAACAAAGAAATGAAGGTCTAACAATATTTCCCAATGAGTTACATATT
GACCAGTAAATAATTTTCTCTTTCAGATAGCAAGATTCGAACATCACAAT
AAATCACATAGTGATATTTCTCAGAAATATTGAATTCAGACAAAATTACA
CCAAACAACATGAAGCATAGATTCTTTATCGAAACCGGTTATCAATAAAC
CTATCACCACCATTCACCTCATCTTCTGCACCCGCCTCTGAATTCGATGC
TTTCGTTAAAAAGAACGCCGTACAGCTCGCGCACGCGGCCAAGCAACACG
TGCACAAACAAATCAATCCCAACATCAGGTAACTGGTTGTGATTACCCAA
AAAGCAAACACGTACACAGTCTTATTACAATAGTTGAATGGTTGATGAGG
CGGAGGCGTGTAATTTGGTTTATATTTGGAATACACCCATATATTTCCCG
CCACGAACCACGTGAATAAAAACAAGTTTAATACGCCGTCAACGAACAAC
CATGCGATTGGACGCTCCTCCTCGTTGCTTTTATCACTTTGAAAGATATC
TCCGTTATATGTGATTCGCTGAATTATGATGGAGAGCATTTTGATGATAC
CGAACGATCCACCGACAATGAGATAGATCGGAATGAATGGTTCGATCGGA
CAAAAATCTTTGTATGACACTCCTATAGAAATAAAGTTATTACAATTTTG
ATTAACATGTTCTAAAGGGGGACCTCTAAAGAGTGGGGAAACCTTTGAAA
CGGACAGCGATTGGCTATATTTATATTGAGATATCTTTGGTATGGCGTGG
TATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013136XLOC_013136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023368-exon-sc0000452-1575043694:258362..258431TCONS_00023368-exon-sc0000452-1575043694:258362..258431Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1575043694:258022..258128TCONS_00023368-exon-sc0000452-1575043694:258022..258128Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1575043694:256874..257605TCONS_00023368-exon-sc0000452-1575043694:256874..257605Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1510915933:258362..258431TCONS_00023368-exon-sc0000452-1510915933:258362..258431Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1510915933:258022..258128TCONS_00023368-exon-sc0000452-1510915933:258022..258128Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1510915933:256874..257605TCONS_00023368-exon-sc0000452-1510915933:256874..257605Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1491911889:258362..258431TCONS_00023368-exon-sc0000452-1491911889:258362..258431Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1491911889:258022..258128TCONS_00023368-exon-sc0000452-1491911889:258022..258128Clytia hemisphaericaexon
TCONS_00023368-exon-sc0000452-1491911889:256874..257605TCONS_00023368-exon-sc0000452-1491911889:256874..257605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:256874..258431 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.073208	0.223403	0	0	0.40821	0.451153	0.138366	0.117623	0.34187	0.168931	1.52633	0.254244	0.267337	0.419058	0.462863	0.543226	0	0.185598	0.125132	0.733644	0	0	0.316411	0	0.788605	1.05668	0	0.370839	0.314583	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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