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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023358 ID=TCONS_00023358|Name=TCONS_00023358|organism=Clytia hemisphaerica|type=transcript|length=569bp
CTTTTTCCACTTGAGCAATCTTTATTAATTACATCTGCTGCATCTCCTTT
AGAAAGCAAAGCAACTCGGCcaattaattctttttcatcAACCCAACAAG
AACAATCCCATCATAGTGCTGCACCTAAAGGCATGTCAATATGGTATCAG
CCAAGAGCGTTTAAGAAGAAAACAATAATGAGTGTCCTTTATCTTGGACA
CGATATTGTCGTTGGTAGAGAAAGCCTTTCCGAATGTGATGACAATAAGA
TGGTAAAACTTTCTggactgaaaatcaaacaagcAAAAGAAATACTAAAA
ACTATGAGGAAAAAATATAATAAGGAAAGTGACCACACATTGTTTCAAGC
CTTTTATGAAAAGGCAAAATTGCTCTTTGATGCAGCCCTTCCGGAAGAAG
ATCCGTCGTTTTCATATTTGCAAACTGTCTCACCTCTTCAAAAGAAACCA
GCCTCCATCAATACACAAAGTACAACATCTCACgaatcaacaaaatcaaa
caaagagCTTTCGTCTCCTATCCAAAAAGATCAAACAATGTCAGAAGAAG
AAGATATGTTACCTTTGAA Run BLAST on NCBI transcript from alignment at sc0000452:106850..109242+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023358 ID=TCONS_00023358|Name=TCONS_00023358|organism=Clytia hemisphaerica|type=transcript|length=2393bp|location=Sequence derived from alignment at sc0000452:106850..109242+ (Clytia hemisphaerica)
CTTTTTCCACTTGAGCAATCTTTATTAATTACATCTGCTGCATCTCCTTT
AGAAAGCAAAGCAACTCGGCcaattaattctttttcatcAACCCAACAAG
AACAATCCCATCATAGTGCTGCACCTAAAGGTAGTTAttactaaattttt
gaaaagcgaTAAATAGTATCATGACAATTGTGCAACACTTTTCAGTCATT
GTGAAATGCCTTAAGGGAAAATATGGCGGATTTGGtgcattttgtttctt
ttctctaATGGTTTGTCACTAATTGACGTTTTACAGAATTTATCATGTTT
CCTGTTGTActagaaaaatcattttcaataaCACATCCTGATTCTCCTTc
agaaataaaatcaacttcGCCAATCAATTCTTTCTCGTCGATCCAACAGG
AAAAATCATGTCAAAGTTCTTCACCTAAaggaataaatttttaaaaagcg
aTAGGAACATGACATCAGCAGTGTTATTTAACCCTTTTTAAGGCCGCTCT
ACACACAAGAATAATAAGATGAATTCGACTAGAATTTTCTGTTTGAACTG
TTATTCTTGTGCAAACTGCACGcaggaattgaaaaaaaatgtaaattaga
taatacttgaaaaattttctaatatCCCTTTTAATGTTGAATTCTTCTTC
AAACTACCCATAAGAATAAAAACCACGTGTCCTTTTAAATGTCCGAACTG
AAATCAATCATGTACTCCACTTCAATGTCTTGTTCTAAGATTGAAGTTTC
ATTCTTGtgaaaatctatatattaatacgcttaaacgtgtgtgtttacaa
ggttttgtaaaaagttttcgaaaatctaacaaagctctacaaagcctcct
cttcatggcgttgaaccatcatctttttgcactttaagcagatttcctac
cactagactaaatTTGAGACACCAAtatgctattttctattcaccaagtt
tggagcttgatcagttaaaatcaaccttctttccaaatttcttttgtcaa
tttaaagaattcttattcagatattctttaaaactttctgtttacaatag
cggctccctatcactttcaaaactttttaaaacatttttatataatCTTT
TGTCCCGGTTTCAACTTTggtttttttgaagaatgtgcaTTCTTCTGAAC
CAGTAAGCCAACTGTGGCTTGCATAAAATTAGTTACTTCATTCAAGGATA
TAGTAAGAGtgtctttcaaactttcactttgaaattgtctttctaatcta
tatattaatacgcttaaacgtgtgtgtttacaacgttttgtaaaaagttt
tcgaaaatctaacaaagctctacaaagcctcctcttcatggcgtTGAACC
ATCATCTTTTTTCTCCTTAAGCAGATTTCccaccactagactaactttga
gaccccaagatactattttctattcaccaacTTTGGAGCTTGatggtttt
tttctgtttacaatagcggctcccttatcactttcaaaacttttcaaagt
ctttcaaagtcaccctcgaatgtccaactacgatggctagccacgatggc
taagacgatctaaaatatacttttgctaagtcatttatttaattgtggtt
taaaattgcaatgcaatgttaattttttttctcttttatttcctaaaatc
aaaatcaaatcatcgaTCCTTTCCGTTAGAATTTTGTAGTGATTCACTGG
ATTGGTtcacgcagcgtgcgacgctgcgcatacggctagtggTAATTATA
GCACTATTAAACAAGAAggtcatttcattttcattttttgaagtttttca
aataactttttatttaaaattattccgctcaacaatatctttccaacggt
accaaATTTGTTAAGATTGAAACATTCCTTAAATGGTTACAGCCGAAACA
AAAAAGATAAGAATACATTGATTTGATAATTTCTTGTTTTGTTTCTGTTT
CTAGGCATGTCAATATGGTATCAGCCAAGAGCGTTTAAGAAGAAAACAAT
AATGAGTGTCCTTTATCTTGGACACGATATTGTCGTTGGTAGAGAAAGCC
TTTCCGAATGTGATGACAATAAGATGGTAAAACTTTCTggactgaaaatc
aaacaagcAAAAGAAATACTAAAAACTATGAGGAAAAAATATAATAAGGA
AAGTGACCACACATTGTTTCAAGCCTTTTATGAAAAGGCAAAATTGCTCT
TTGATGCAGCCCTTCCGGAAGAAGATCCGTCGTTTTCATATTTGCAAACT
GTCTCACCTCTTCAAAAGAAACCAGCCTCCATCAATACACAAAGTACAAC
ATCTCACgaatcaacaaaatcaaacaaagagCTTTCGTCTCCTATCCAAA
AAGATCAAACAATGTCAGAAGAAGAAGATATGTTACCTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023358-exon-sc0000452-1491911889:106850..106979 | TCONS_00023358-exon-sc0000452-1491911889:106850..106979 | Clytia hemisphaerica | exon |
| TCONS_00023358-exon-sc0000452-1510915933:106850..106979 | TCONS_00023358-exon-sc0000452-1510915933:106850..106979 | Clytia hemisphaerica | exon |
| TCONS_00023358-exon-sc0000452-1575043694:106850..106979 | TCONS_00023358-exon-sc0000452-1575043694:106850..106979 | Clytia hemisphaerica | exon |
| TCONS_00023358-exon-sc0000452-1491911889:108804..109242 | TCONS_00023358-exon-sc0000452-1491911889:108804..109242 | Clytia hemisphaerica | exon |
| TCONS_00023358-exon-sc0000452-1510915933:108804..109242 | TCONS_00023358-exon-sc0000452-1510915933:108804..109242 | Clytia hemisphaerica | exon |
| TCONS_00023358-exon-sc0000452-1575043694:108804..109242 | TCONS_00023358-exon-sc0000452-1575043694:108804..109242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:106850..109242 + |
Blast
The following BLAST results are available for this feature:
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