|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023356 ID=TCONS_00023356|Name=TCONS_00023356|organism=Clytia hemisphaerica|type=transcript|length=557bp
NNATCTCACgaatcaacaaaatcaaacaaagagCTTTCGTCTCCTATCCA
AAAAGATCAAACAATGTCAGAAGAAGAAGATATGTTACCTTTTAAGAAGA
AATCATCTCCAAATGAAAGCATGTCAATATGGTATCAGCCAAGAGCGTTT
AAGAAGAAAACAATAATGAGTGTCCTTTATCTTGGACACGATATTGTCGT
TGGTAGAGAAAGCCTTTCCGAATGTGATGACAATAAGATGGTAAAACTTT
CTggactgaaaatcaaacaagcAAAAGAAATACTAAAAACTATGAGGAAA
AAATATAATAAGGAAAGTGACCACACATTGTTTCAAGCCTTTTATGAAAA
GGCAAAATTGCTCTTTGATGCAGCCCTTCCGGAAGAAGATCCGTCGTTTT
CATATTTGCAAACTGTCTCACCTCTTCAAAAGAAACCAGCCTCCATCAAT
ACACAAAGTACAACATCTCACgaatcaacaaaatcaaacaaagagCTTTC
GTCTCCTATCCAAAAAGATCAAACAATGTCAGAAGAAGAAGATATGTTAC
CTTTGAA Run BLAST on NCBI transcript from alignment at sc0000452:106724..109242+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023356 ID=TCONS_00023356|Name=TCONS_00023356|organism=Clytia hemisphaerica|type=transcript|length=2519bp|location=Sequence derived from alignment at sc0000452:106724..109242+ (Clytia hemisphaerica)
NNATCTCACgaatcaacaaaatcaaacaaagagCTTTCGTCTCCTATCCA
AAAAGATCAAACAATGTCAGAAGAAGAAGATATGTTACCTTTTAAGAAGA
AATCATCTCCAAATGAAAGTACGTTTCTTTTTCCACTTGAGCAATCTTTA
TTAATTACATCTGCTGCATCTCCTTTAGAAAGCAAAGCAACTCGGCcaat
taattctttttcatcAACCCAACAAGAACAATCCCATCATAGTGCTGCAC
CTAAAGGTAGTTAttactaaatttttgaaaagcgaTAAATAGTATCATGA
CAATTGTGCAACACTTTTCAGTCATTGTGAAATGCCTTAAGGGAAAATAT
GGCGGATTTGGtgcattttgtttcttttctctaATGGTTTGTCACTAATT
GACGTTTTACAGAATTTATCATGTTTCCTGTTGTActagaaaaatcattt
tcaataaCACATCCTGATTCTCCTTcagaaataaaatcaacttcGCCAAT
CAATTCTTTCTCGTCGATCCAACAGGAAAAATCATGTCAAAGTTCTTCAC
CTAAaggaataaatttttaaaaagcgaTAGGAACATGACATCAGCAGTGT
TATTTAACCCTTTTTAAGGCCGCTCTACACACAAGAATAATAAGATGAAT
TCGACTAGAATTTTCTGTTTGAACTGTTATTCTTGTGCAAACTGCACGca
ggaattgaaaaaaaatgtaaattagataatacttgaaaaattttctaata
tCCCTTTTAATGTTGAATTCTTCTTCAAACTACCCATAAGAATAAAAACC
ACGTGTCCTTTTAAATGTCCGAACTGAAATCAATCATGTACTCCACTTCA
ATGTCTTGTTCTAAGATTGAAGTTTCATTCTTGtgaaaatctatatatta
atacgcttaaacgtgtgtgtttacaaggttttgtaaaaagttttcgaaaa
tctaacaaagctctacaaagcctcctcttcatggcgttgaaccatcatct
ttttgcactttaagcagatttcctaccactagactaaatTTGAGACACCA
Atatgctattttctattcaccaagtttggagcttgatcagttaaaatcaa
ccttctttccaaatttcttttgtcaatttaaagaattcttattcagatat
tctttaaaactttctgtttacaatagcggctccctatcactttcaaaact
ttttaaaacatttttatataatCTTTTGTCCCGGTTTCAACTTTggtttt
tttgaagaatgtgcaTTCTTCTGAACCAGTAAGCCAACTGTGGCTTGCAT
AAAATTAGTTACTTCATTCAAGGATATAGTAAGAGtgtctttcaaacttt
cactttgaaattgtctttctaatctatatattaatacgcttaaacgtgtg
tgtttacaacgttttgtaaaaagttttcgaaaatctaacaaagctctaca
aagcctcctcttcatggcgtTGAACCATCATCTTTTTTCTCCTTAAGCAG
ATTTCccaccactagactaactttgagaccccaagatactattttctatt
caccaacTTTGGAGCTTGatggtttttttctgtttacaatagcggctccc
ttatcactttcaaaacttttcaaagtctttcaaagtcaccctcgaatgtc
caactacgatggctagccacgatggctaagacgatctaaaatatactttt
gctaagtcatttatttaattgtggtttaaaattgcaatgcaatgttaatt
ttttttctcttttatttcctaaaatcaaaatcaaatcatcgaTCCTTTCC
GTTAGAATTTTGTAGTGATTCACTGGATTGGTtcacgcagcgtgcgacgc
tgcgcatacggctagtggTAATTATAGCACTATTAAACAAGAAggtcatt
tcattttcattttttgaagtttttcaaataactttttatttaaaattatt
ccgctcaacaatatctttccaacggtaccaaATTTGTTAAGATTGAAACA
TTCCTTAAATGGTTACAGCCGAAACAAAAAAGATAAGAATACATTGATTT
GATAATTTCTTGTTTTGTTTCTGTTTCTAGGCATGTCAATATGGTATCAG
CCAAGAGCGTTTAAGAAGAAAACAATAATGAGTGTCCTTTATCTTGGACA
CGATATTGTCGTTGGTAGAGAAAGCCTTTCCGAATGTGATGACAATAAGA
TGGTAAAACTTTCTggactgaaaatcaaacaagcAAAAGAAATACTAAAA
ACTATGAGGAAAAAATATAATAAGGAAAGTGACCACACATTGTTTCAAGC
CTTTTATGAAAAGGCAAAATTGCTCTTTGATGCAGCCCTTCCGGAAGAAG
ATCCGTCGTTTTCATATTTGCAAACTGTCTCACCTCTTCAAAAGAAACCA
GCCTCCATCAATACACAAAGTACAACATCTCACgaatcaacaaaatcaaa
caaagagCTTTCGTCTCCTATCCAAAAAGATCAAACAATGTCAGAAGAAG
AAGATATGTTACCTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023356-exon-sc0000452-1491911889:106724..106841 | TCONS_00023356-exon-sc0000452-1491911889:106724..106841 | Clytia hemisphaerica | exon |
| TCONS_00023356-exon-sc0000452-1510915933:106724..106841 | TCONS_00023356-exon-sc0000452-1510915933:106724..106841 | Clytia hemisphaerica | exon |
| TCONS_00023356-exon-sc0000452-1575043694:106724..106841 | TCONS_00023356-exon-sc0000452-1575043694:106724..106841 | Clytia hemisphaerica | exon |
| TCONS_00023356-exon-sc0000452-1491911889:108804..109242 | TCONS_00023356-exon-sc0000452-1491911889:108804..109242 | Clytia hemisphaerica | exon |
| TCONS_00023356-exon-sc0000452-1510915933:108804..109242 | TCONS_00023356-exon-sc0000452-1510915933:108804..109242 | Clytia hemisphaerica | exon |
| TCONS_00023356-exon-sc0000452-1575043694:108804..109242 | TCONS_00023356-exon-sc0000452-1575043694:108804..109242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:106724..109242 + |
Blast
The following BLAST results are available for this feature:
|
