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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023317 ID=TCONS_00023317|Name=TCONS_00023317|organism=Clytia hemisphaerica|type=transcript|length=2515bp
CTGACAACAACCACAATTCATCTTaGAAGAAAATAATAATGGCGGATGAA
GATGGGGGAGGAGAAGTGGTTGGAAGCTCCTTCATGAACACATTTATTTT
GATGGAAGAACTTCTTGATAAACTTAAACTTTTAGGCTATGAAAAAGAAT
TCTGCAGAGGTTGGGGCTTCAAAGCATTTTCAAGACATTATTTTGCTGTA
CCTACGAACCCAGGAGAACAATTTTTTGCTTTTACAAATATTGTAGCTTG
GCTGTTAAACCAATGCTCGAAATCTTTTGATCGACCCCAAGAATATGACG
ACCCAAATGCTACCATATCAGAAATTCTAGACCAATCCAGATCTCTAGGT
ATAACAGTTGATTTCCCACCAGCAAAATTGAAATCTGGTCATGGAGAGCA
AGTGATTTACTTGGTGAATAAATTGTGTTGCGAGGCTTTGAAGTCTCAAA
TGTTTTCATGGAAGAGGCCGGAATATATGGAAGAAGAGGAAGCTGAGGAG
AATATTGTGGAAGATGACGCAGAGTTGACCATGGATAAATTAAACGACGA
ACTGgctgaagaaattgaagaagaagcTGATGAAGAAGAAGCCTATCTTG
ATCTCTCTGGTatgaaacaacaaaattttgccaatGATTTTGGTACGAAA
CCAGAATCCATGTTGGAATCTAATGTTGATGCAAATGAATGGAAATTGGA
AATTGAACGTGTTTTACCCTTACTGAAAGTTCATATTCGTGCTGATAATA
AAGATTGGAGGAACCATTACGAGCAGATGCAGCAGTATAGTACTGGTATT
TCACAAACATTGCAAGAGACTCAAACTCAACTTGATAAGTTACATCAGGA
GATTAGTAAGACTCTGGAAAAAGTAGCAAGCCGTGAAAAATATATCAACA
ACCAGTTGGAAGGTAAAATCCAAGATTTCCGCTCAAAGCAAGATAATTTG
GCTGTATTGAAGGAAAAATATAACCAAAGCAGTGGCGGTGTTACAGAGTT
GACACAACAGTTGTCACAAATCACAGATGAGCTTGAGCAAGTGAAAATAC
AGATGGATGAGAGAGGAACCAATATGACGGATGCTGGCCCCTTGGTAAGA
ATCAAGCAAGCGCTCTCAAAACTCAAACAAGAGTGTATAGAGATGGATTT
GGAAGTCGGTGTCTTGGAGCATGCTTTGCTTCAAGGGAAAGTTCGAGAAA
AACTTGGATTGGAAGACAAAGTCAATAGAATTAAATCAGCAAAAACATCT
GAATTATAAAGTTagaaaaggattttttttttcaaaaatgatttttatct
tttttttctttttaaaaatatggCATGTACAataagttgtaaaattttat
gtTAATATAATGATTActccaaaagatttttatttgcTTGGATTTGGAAC
CAAGACTTGTCAGTTTATTATAATAACCAATAACCAATAGCCAATGATAA
GATACTCTGTATAACTTTAGACCTATGTTTAAAAAGTTAGGCCTGACAAT
TCAGATTAggatatcttttttttaatgaacgGAACTTTTTAGCAGCTCGA
CGAAGACTATATTTTTGTCTCAGAGTTTCGTCAAAGAACGAAAGTTTTGG
AGTCATCAGTTATCCTTTTTACATtgttaaagaaatttttagtaGAGAGC
AGCCATGATTCTTTGAAATGTGACCTTTTAATGGAATCAATATCATAAAC
AATCTAAATTAGTAAGTTTTGCATAACCTTCTAAAAACTGTATAACAATC
ATGTTTGGAAAGAGATTATACTGACCCTACATGTTTGCTTAGTCTACTAT
GTCATAACCCTTCTCGTCTTAAACTATAGATTTTCCCCCTTTTTATTTGA
CCTTTCAACAAATCGTTTTGCATCCTTTTATCAATTCTACTGcacgattt
ttttataagaacatccaaaatatttgaagccttgggatattcttaacttt
ttgagttttaagcctaaaaatgttcttaaacattttcatattttcgccat
ttgttgaatatttttgtgatattttcctttgaaatcggGTGCTTTAAGGT
ctgcaaagtcttaaaatgtccTTAACTTTGACACTTTTGCCATCagagcc
ttatgttcttatatagtttgttcttataaaaaaactgagcGAGAGTTGTC
AATAACCACTAGAAAAGATTGTACAACAGCAGGCCAATCATTTCATCAAT
TGAAAGATTGTCTTCGTATTTCAACGACATTGAAAAGTGATAACCTAACC
TTTGCCTACAGTTCAAAATATAATacgattttttaaaattcattatATTT
ATATTTCTTGTAACTTTTTGCCCCTTAATGACTGGTTGTGATTCAATCAA
TCAATGCGTTCTGTTTAATCTAAGCTGACAACAAGTGTCAACAATAAAGT
TTGTAGTTGGTTTTATCATAAAGAAACTTTATCCTGCCTGCTCAccgttt
ttatttattttggcaaaaagtaTTATCATTATATGAAAAAAGAGAGCTGT
CACATTTTATGATAT Run BLAST on NCBI protein sequence of TCONS_00023317-protein >TCONS_00023317-protein ID=TCONS_00023317-protein|Name=TCONS_00023317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MADEDGGGEVVGSSFMNTFILMEELLDKLKLLGYEKEFCRGWGFKAFSRH
YFAVPTNPGEQFFAFTNIVAWLLNQCSKSFDRPQEYDDPNATISEILDQS
RSLGITVDFPPAKLKSGHGEQVIYLVNKLCCEALKSQMFSWKRPEYMEEE
EAEENIVEDDAELTMDKLNDELAEEIEEEADEEEAYLDLSGMKQQNFAND
FGTKPESMLESNVDANEWKLEIERVLPLLKVHIRADNKDWRNHYEQMQQY
STGISQTLQETQTQLDKLHQEISKTLEKVASREKYINNQLEGKIQDFRSK
QDNLAVLKEKYNQSSGGVTELTQQLSQITDELEQVKIQMDERGTNMTDAG
PLVRIKQALSKLKQECIEMDLEVGVLEHALLQGKVREKLGLEDKVNRIKS
AKTSEL Run BLAST on NCBI transcript from alignment at sc0000450:195436..204404- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023317 ID=TCONS_00023317|Name=TCONS_00023317|organism=Clytia hemisphaerica|type=transcript|length=8969bp|location=Sequence derived from alignment at sc0000450:195436..204404- (Clytia hemisphaerica)
CTGACAACAACCACAATTCATCTTGTAAGTTACTGTTGCCATGAACTGTG
ATTTAATACATTTTTTTAACAAGACAGTTGGTCTTGGATAAAGTTAGTTA
AATCAGGATAAATATCACAAGTTTAGTGCTGTGTTTGTGGGTTTTCTTTT
TATCAAATTTGTTCAAACTTCTTGTATGTAGCATTTTCTTGTGTTTTTGT
TTGGCAAAACTTCTTTTGAGGGGTGGGAATTAAAAGCCTCAAGTTTGGCT
CCGGAGTTTGGTTTTTTAAACCAGATGGTACTAATCAATAACTTTGATTA
TCGAAGTAATCGATAATTATTGAAGTAATGAAACGACCACGTCGATTGTC
ATTGATTAATTTCTATTATAACTTCACAATAACCATTGATTTGTAGAAAA
ACCAGAAACACTGACCTCAAACCAAAGCACAAAAATAAGTGCAAGGCATA
AGAATGACCTTCAGTAATTACCACGCCATTTTGTGTGCGTTTTAAGTATT
AATTCGTATCGTGCATTTTGATTGGTTGGAGAAAACAAAAGTGGTTTTGG
TGTCATGTGAATCGCGCATTTTGATTGGTCTAGATAAACTCGATTTCAGA
TTCTGCCATGCTGCTGCCAGGAGCAATATTAGATACAATCAGTCTAGACT
TAAACTCCTATATCAGCATTAGAAACTCCCGTAGAATCGTCTAATATCGA
CATGCGTCTTGTTATTTTACATAGCTGTAGGCTGGTCTTCGAAATAAAAA
ATCAAACATACAGTAAACAAATACATACCAAAGTTATCAATTAATCACTA
AATTGTACTCTCCCTATCACATCAAAATTTGCAACAAAAACGAAAGTAAT
CTCTTCTACCGATTGCTTTGTGGCGCTCCTTGTCCTCGCAGACTGTTTAT
TTGATTTCCACCAATAAGATTGCATTTCACACTGCCCTTCTTTTCAGCGC
TGTGGTCTAAAATCTCACCCTTCAAAACACCTCTTTTACCGTGAGATTGG
GTAACTTGCATCAGTGGAGGCTGGGCAAAATTATTTTAAAGGGAACCAAA
AAGTTCATCTGGGAGCTGAAAATCTTTTTTCAGTAAACATTTTCAAATTT
ATATGTATCATTTTTCATAGTATCTTAAACTCATTTGCAGTTGTTTAGAG
CTACAGCACTTCCGAAACTTGATTTTGCCATTTTTCAGGCTAAAAAGCCT
TGAAATTAAAGCTTTTTAGCCTAAAAAACGGCCACAGCCATATCACAAAA
AATACAATGAATGCTGCAGTTTTAGTTATTCAAAATCCAACATAGGCCAA
CAATTGATCAAGAAAACTCATTTACAGCATGATTGGCCTTCCCTGGATTG
AACGGTTGAGGATTTTATTTTCCAAAAATCTTGGTTACGGAATGACGGAA
AAATTAAAAATGCTGTAAAGTTTTAAGGAAACATTTTTAGAGTAAAATAT
TTGGCAAGTTTCTACCTCTTACTGAGTACTTTCAAACCAGGCATAAATTA
ATTGCTATTGGGGGAAGACTGGTTTTTAATTGAGAAATCATTTTTGGTTA
CGGAATGACGGAAAAATTAAAAATGCTGTAAAGTTTTAAGGAAACATTTT
TAGAGTAAAATATTTGGCAAGTTTCTACCTCTTACTGAGTACTTTCAAAC
CAGGCATAAATTAATTGCTATTGGGGGAAGACTGGTTTTTAATTGAGAAA
TCATTTTTGGTTACGGAATGACGGAAAAATTAAAAATGCTGTAAAGTTTT
AAGGAAACATTTTTAGAGTAAAATATTTGGCAAGTTTCTACCTCTTACTG
AGTACTTTCAAACCAGGCATAAATTAATTGCTATTGGGGGAAGACTGGTT
TTTAATTGAGAAATCATTTTTGGTTACGGAATGACGGAAAAATTAAAAAT
GCTGTAAAGTTTTAAGGAAACATTTTTAGAGTAAAATATTTGGCAAGTTT
CTACCTCTTACTGAGTACTTTCAAACCAGGCATAAATTAATTGCTATTGG
GGGAAGACTGGTTTTTAATTGAGAAATCATTTTTGGTTACGGAATGACGG
AAAAATTAAAAATGCTGTAAAGTTTTAAGGAAACATTTTTAGAGTAAAAT
ATTTGGCAAGTTTCTACCTCTTACTGAGTACTTTCAAACCAGGCATAAAT
TAATTGCTATTGGGGGAAGACTGGTTTTTAATTGAGAAATCATTTTTGGT
TACGGAATGACAGAAAATTATCTTACTTTACTGAAATAAAAATTATGAAA
TTTTCACTTAACCATATCACCTCAAACATTTTTTAAGCTGATACAGTAAC
TTTGTAGTCCAGGGTCTGGAGCTCAACTATTTTTTGCCTTTGATAATCTG
ATGGTGGAAAAAATAGAGAAATGGCAGCGCCATCATTCAAATCAGAAAGC
GAAGATAGTATACGGCAGACTTTCTGACTAGTAACTTTGTATCAAAATCT
AAGCATTTGATCCATCTTGAAAACCTTTCCATTGACCCTATATAGGGTTC
TAAAGTTGAATAAGATTTTTACAGCAGATTCTGTTTCATATCATGTGTAC
CGCATTCATGATAAATTAAAAAAATTGGTTGAGTGTTACCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGATAAATTTAAAAAATTGGTTGAGTGTTACCAAAAATCTTTTTGA
TTTTCTCAAAGTGTTATCGTTGCTATGGCTAAAATCATGACTTTGATAGC
ATAATCATTAGTCAGTGTCAATTTATTAACCACTTTATAACAATGCAAAT
TTTTGGGTGACACTCTGTTTCATGGAAAAAATGGGCAGTTTTTGAGTTTT
AAAATGCCATAACTTTAGTTTCGCTTGTGCTACAGACTTGTATGAGCTCT
CATTTTTCAGCATTTTTTATTGTGCATCCTCTGAAATTAAAATCATTCAA
TGACAATCTCTACTTTATGCACAATATCCTTTTGAAATCAAGGTGGTCTC
TGGTTCCCTTTAAAATAATTTTGCCCGGCTAACATACATACCTCCAAATG
AATAACCTGGCTGGTCATTAAAATACAAAATTGAATCAAAATAAAATGGT
AGAGTAGAAGAGCTGCAAGCGGAGCTGCGTCGTTCGTTTGTTTTGAAATT
TTGCTGCTTTGCTTGGTCAGTCATTTGATGGCTATGCAAGTTTCCCTCCA
CTGTGATCCTAAGAATTTATAGACTATTTTTCATCTTTAATTCTCAGAAG
AGTTAATAAAGTATCATAAAAATCATTGAATACCGTCAACTGCTCTAACT
TGGGATGATTGGTCGAAACATGGGACTGTTAATATCTGGCCTGTATTTTT
ACTTACTGTTAAATCGCTTTGACAAAAAATTTGTTTTGATAACTCCACCA
AGTTTATCGATCATCGATCATACTTTCTGTCATAACATGTCACGATAATT
TTCACTGATAGTGGGTCCTTTTTAACTTTTTTGTTTTTATTCAAAATGAC
TGGACGCCAATTGGAGAATTAGAGAACGCCCGCCGCCTAACTGCCTATCG
CCCGATGGGATTAAGAAATTACGAGTGTGTAACTTGCCGCGTTAGTGACG
TCAAACACTCCATCGTTTTGCCACTAATTTGGTCTTATTCGTTCCAGACA
TTCGCGTGTGTTCCACTACTGATTTTTTTCATATTTCGATTTAAAAGCCT
ACTCAGTGCGAAAGAGAAATTGTGTATTTCTTCAATACGCCCTTCATTAA
CTCAAATCAAATGACTTTGGAGGTTCGGTGAAATGGTGGCCAAATTGTTT
TGTCAGATAGTCCAAGTTAGAGCAGTTGACAGTAAAAGAAGAACTTAAAA
TCTTCTTAGATATTTTCATTTTGAAAGAAGAGTGAAACATGAGAAAGTTT
TTATTGCTTTAATTCAAATGGGGGATTTGGAAAATGTTCTATGTTTGGGT
TTTTGCACAAACCCCTGTAACTATGGGCGAGCACCTGATTGCTAAGATGT
TGGCTTGAAATCAATAATGAAATCATTGAAAACAAAAGTAAAATCAGCGC
GCACTGCAAATCACATAATCTTGATATAGGAGTTTTAGTCTATACTGACA
ATCAAAGTTATTCAACAGCCCTCGAAATTCAAGTAAAAGTAAGTCGGCAC
GTAAGTGCCGTCCAAATCCGGCCGAAGGCCGGCAAAATTTTGCCGACCTA
AGCTTGTTTTTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCTGAGCTATATTTTAGGTCGGCAAAGTTGTTTAA
AGGCTACGGCAATGTTTGTTTTTTTATTTGAGTGCGATATGGTTCTTATT
AGAGACTTTCATTTTACAGTTACCGGATAAAAGAATAATAAAATAACAAA
ACGAGGAATAAAATTTGCTGACCTAAAAGATAACTTATGGTCGGCTGCCG
AGAGAATCAATGAATATGGTCGGCAATGAACTGCCGACTATACGCACTCT
TTGGTCGGCTTTTAGGTCGGCACTGTCGAATGCCGACCTGAAATTCGAGG
GCTGATTCAATATGATCAAAAATAATCAAAAAATAATCAAACTGATAGAA
CAAATCGAAAATGTTGAAGAAAATGCCATAATTTGGAGACAAGTGAGTAT
TATAAAAATCGTATCGATAAAATAGATAGGTGGTTAGTGATCACCTTCGA
TTATTATATCGGTCATTATTGATTATTCGATCACAATCGAACGTTCAATT
AGTACCTTCTGGTTTAAACTAGACATTTTTCAAGCTTGGACAGTCAAGTA
ATTCCCTCAATTACACAAATGTTGCCAGTAAACTGTCTACCGGATTATTT
CCTGCTGTAATTGATGGATTACTCAACAAGAGTGTTACCAGCAAGATGCC
AATAGTTTTGCCAGTATAAATCTGGAAGATTTTTATATACTTATCGCTTG
GAGACTCACATTTGTCCTTCTAAGCCAGTTTTTTGTGTGTAAATTTTCAA
TTTTTGATTTGCAAAAGTTTATGCTTGCTAAAAAAGATTTGTCCCTGTAT
TTTGAATACTGCAATTTTTGGCCCTTACAAAACTTTTCTTCTTGCAAAAG
TTTACACACTGTTACACACCTAAAAAAACTTCCAAACTCATTGTTTAGCC
ATATTAGAATTTAAACACATGTTAGTAATTGATAATTTGAATTTAGCCTG
GGAATGCATGCTCATAATATTAGAAAAAAACAAAAAATACCTCACCTCGC
AAAGTTGTTTATAGAGCATGGTGCAGGTAAATTAGTCTGACACAGAATGT
TATAAACAGTCTGTGTGTGAACCCTTGTTGACAGATTTCCTGAACTTTGG
AAACCCAGGCAAACACACATAATCAACTTACCATAAAAAGTCTTTCACAA
GCCCTAAAGACTTTCAAAACAACTAAAAAAAACATCAAAACATCAGCCAC
ATGAGTTCCAGTCAACAGCCATTTTGTTTCTAAATGAATCTATGTTTTCA
TTTTCATTTGTTTTCCTTTTTTTGCAGAGACAACTTTTTCCATAAGTTAT
GTGCGCGCATCGAAATTATAAAAATGCGCGCAAAAGTACTGCTAAATAGT
TCGCACAAAATCTGGCCAATCAGACTGAATATTGCATTGCAGGGAAAAAT
CTCCCTGCAGGTGAGTTACCTGCGTCAAAAAACAAACAAGCAGCAAAATA
TCATAAGCTAGACTGTGGAAAAAGTTTAACGCTTGGATTCCCAGCCTAAT
TTGAATTGAAAAATATGTAAGATGATATGACACCATCCTGCATCATTATG
TATTTTAAGTCATCAATGTAAATTTCACTCATTTTCAGCATTGATAGTAA
CTGTAATAAAGCTTCATAAAAACACACAAAAAAAAAAGTTACATTTTCTA
GGATTAGAAGTTAGCGTATTGAACTTGACAGTACCTATCTGCCTCTAAAA
GATGGTACCTCTTTACCAATAAAGAAGTTTCTAGCATCAAAGGAAAAAGT
TGTTTTTCTTCTCCTTTTTCATTTCCATTTTGAATTATTTTTCTCAAAGA
TTGTAGTGCTAAATTATACTTTTCAACAGTAGATATTTTTTTAGAATTGA
AATACTAGTTGAAAAATGGCACAATGGCAAGCAAAACAAGAGTTAATGCA
CACCTAGGCAAATGGACTCTCGAAAGTTGAAAATCATGTTCTGTGCAATC
ATGCTTCTATAAAATTTGAAAGAAGATCTTTTCTTTGCCATTTTCAATTT
TCTGAACTATTATAATTACTCCAGATAAATATTGACTATTAAGAAGCTTT
GTGCACTAGGTTTAAAAAGACCACTGAATTATTGTTAAACCTTAATTATA
AATAATAAATTGCTTTTGATAATTTTAGAGAAGAAAATAATAATGGCGGA
TGAAGATGGGGGAGGAGAAGTGGTTGGAAGCTCCTTCATGAACACATTTA
TTTTGATGGAAGAACTTCTTGATAAACTTAAACTTTTAGGCTATGAAAAA
GAATTCTGCAGAGGTTGGGGCTTCAAAGCATTTTCAAGACATTATTTTGC
TGTACCTACGAACCCAGGAGAACAATTTTTTGCTTTTACAAATATTGTAG
CTTGGCTGTTAAACCAATGCTCGAAATCTTTTGATCGACCCCAAGAATAT
GACGACCCAAATGCTACCATATCAGAAATTCTAGACCAATCCAGATCTCT
AGGTATAACAGTTGATTTCCCACCAGCAAAATTGAAATCTGGTCATGGAG
AGCAAGTGATTTACTTGGTGAATAAATTGTGTTGCGAGGCTTTGAAGTCT
CAAATGTTTTCATGGAAGAGGCCGGAATATATGGAAGAAGAGGAAGCTGA
GGAGAATATTGTGGAAGATGACGCAGAGTTGACCATGGATAAATTAAACG
ACGAACTGGCTGAAGAAATTGAAGAAGAAGCTGATGAAGAAGAAGCCTAT
CTTGATCTCTCTGGTATGAAACAACAAAATTTTGCCAATGATTTTGGTAC
GAAACCAGAATCCATGTTGGAATCTAATGTTGATGCAAATGAATGGAAAT
TGGAAATTGAACGTGTTTTACCCTTACTGAAAGTTCATATTCGTGCTGAT
AATAAAGATTGGAGGAACCATTACGAGCAGATGCAGCAGTATAGTACTGG
TATTTCACAAACATTGCAAGAGACTCAAACTCAACTTGATAAGTTACATC
AGGAGATTAGTAAGACTCTGGAAAAAGTAGCAAGCCGTGAAAAATATATC
AACAACCAGTTGGAAGGTAAAATCCAAGATTTCCGCTCAAAGCAAGATAA
TTTGGCTGTATTGAAGGAAAAATATAACCAAAGCAGTGGCGGTGTTACAG
AGTTGACACAACAGTTGTCACAAATCACAGATGAGCTTGAGCAAGTGAAA
ATACAGATGGATGAGAGAGGAACCAATATGACGGATGCTGGCCCCTTGGT
AAGAATCAAGCAAGCGCTCTCAAAACTCAAACAAGAGTGTATAGAGATGG
ATTTGGAAGTCGGTGTCTTGGAGCATGCTTTGCTTCAAGGGAAAGTTCGA
GAAAAACTTGGATTGGAAGACAAAGTCAATAGAATTAAATCAGCAAAAAC
ATCTGAATTATAAAGTTAGAAAAGGATTTTTTTTTTCAAAAATGATTTTT
ATCTTTTTTTTCTTTTTAAAAATATGGCATGTACAATAAGTTGTAAAATT
TTATGTTAATATAATGATTACTCCAAAAGATTTTTATTTGCTTGGATTTG
GAACCAAGACTTGTCAGTTTATTATAATAACCAATAACCAATAGCCAATG
ATAAGATACTCTGTATAACTTTAGACCTATGTTTAAAAAGTTAGGCCTGA
CAATTCAGATTAGGATATCTTTTTTTTAATGAACGGAACTTTTTAGCAGC
TCGACGAAGACTATATTTTTGTCTCAGAGTTTCGTCAAAGAACGAAAGTT
TTGGAGTCATCAGTTATCCTTTTTACATTGTTAAAGAAATTTTTAGTAGA
GAGCAGCCATGATTCTTTGAAATGTGACCTTTTAATGGAATCAATATCAT
AAACAATCTAAATTAGTAAGTTTTGCATAACCTTCTAAAAACTGTATAAC
AATCATGTTTGGAAAGAGATTATACTGACCCTACATGTTTGCTTAGTCTA
CTATGTCATAACCCTTCTCGTCTTAAACTATAGATTTTCCCCCTTTTTAT
TTGACCTTTCAACAAATCGTTTTGCATCCTTTTATCAATTCTACTGCACG
ATTTTTTTATAAGAACATCCAAAATATTTGAAGCCTTGGGATATTCTTAA
CTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAAACATTTTCATATTTTCG
CCATTTGTTGAATATTTTTGTGATATTTTCCTTTGAAATCGGGTGCTTTA
AGGTCTGCAAAGTCTTAAAATGTCCTTAACTTTGACACTTTTGCCATCAG
AGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAACTGAGCGAGAGT
TGTCAATAACCACTAGAAAAGATTGTACAACAGCAGGCCAATCATTTCAT
CAATTGAAAGATTGTCTTCGTATTTCAACGACATTGAAAAGTGATAACCT
AACCTTTGCCTACAGTTCAAAATATAATACGATTTTTTAAAATTCATTAT
ATTTATATTTCTTGTAACTTTTTGCCCCTTAATGACTGGTTGTGATTCAA
TCAATCAATGCGTTCTGTTTAATCTAAGCTGACAACAAGTGTCAACAATA
AAGTTTGTAGTTGGTTTTATCATAAAGAAACTTTATCCTGCCTGCTCACC
GTTTTTATTTATTTTGGCAAAAAGTATTATCATTATATGAAAAAAGAGAG
CTGTCACATTTTATGATAT Coding sequence (CDS) from alignment at sc0000450:195436..204404- >TCONS_00023317 ID=TCONS_00023317|Name=TCONS_00023317|organism=Clytia hemisphaerica|type=CDS|length=1221bp|location=Sequence derived from alignment at sc0000450:195436..204404- (Clytia hemisphaerica)
ATGGCGGATGAAGATGGGGGAGGAGAAGTGGTTGGAAGCTCCTTCATGAA
CACATTTATTTTGATGGAAGAACTTCTTGATAAACTTAAACTTTTAGGCT
ATGAAAAAGAATTCTGCAGAGGTTGGGGCTTCAAAGCATTTTCAAGACAT
TATTTTGCTGTACCTACGAACCCAGGAGAACAATTTTTTGCTTTTACAAA
TATTGTAGCTTGGCTGTTAAACCAATGCTCGAAATCTTTTGATCGACCCC
AAGAATATGACGACCCAAATGCTACCATATCAGAAATTCTAGACCAATCC
AGATCTCTAGGTATAACAGTTGATTTCCCACCAGCAAAATTGAAATCTGG
TCATGGAGAGCAAGTGATTTACTTGGTGAATAAATTGTGTTGCGAGGCTT
TGAAGTCTCAAATGTTTTCATGGAAGAGGCCGGAATATATGGAAGAAGAG
GAAGCTGAGGAGAATATTGTGGAAGATGACGCAGAGTTGACCATGGATAA
ATTAAACGACGAACTGGCTGAAGAAATTGAAGAAGAAGCTGATGAAGAAG
AAGCCTATCTTGATCTCTCTGGTATGAAACAACAAAATTTTGCCAATGAT
TTTGGTACGAAACCAGAATCCATGTTGGAATCTAATGTTGATGCAAATGA
ATGGAAATTGGAAATTGAACGTGTTTTACCCTTACTGAAAGTTCATATTC
GTGCTGATAATAAAGATTGGAGGAACCATTACGAGCAGATGCAGCAGTAT
AGTACTGGTATTTCACAAACATTGCAAGAGACTCAAACTCAACTTGATAA
GTTACATCAGGAGATTAGTAAGACTCTGGAAAAAGTAGCAAGCCGTGAAA
AATATATCAACAACCAGTTGGAAGGTAAAATCCAAGATTTCCGCTCAAAG
CAAGATAATTTGGCTGTATTGAAGGAAAAATATAACCAAAGCAGTGGCGG
TGTTACAGAGTTGACACAACAGTTGTCACAAATCACAGATGAGCTTGAGC
AAGTGAAAATACAGATGGATGAGAGAGGAACCAATATGACGGATGCTGGC
CCCTTGGTAAGAATCAAGCAAGCGCTCTCAAAACTCAAACAAGAGTGTAT
AGAGATGGATTTGGAAGTCGGTGTCTTGGAGCATGCTTTGCTTCAAGGGA
AAGTTCGAGAAAAACTTGGATTGGAAGACAAAGTCAATAGAATTAAATCA
GCAAAAACATCTGAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023317-exon-sc0000450-1575043694:204381..204404 | TCONS_00023317-exon-sc0000450-1575043694:204381..204404 | Clytia hemisphaerica | exon |
| TCONS_00023317-exon-sc0000450-1575043694:195436..197926 | TCONS_00023317-exon-sc0000450-1575043694:195436..197926 | Clytia hemisphaerica | exon |
| TCONS_00023317-exon-sc0000450-1510915933:204381..204404 | TCONS_00023317-exon-sc0000450-1510915933:204381..204404 | Clytia hemisphaerica | exon |
| TCONS_00023317-exon-sc0000450-1510915933:195436..197926 | TCONS_00023317-exon-sc0000450-1510915933:195436..197926 | Clytia hemisphaerica | exon |
| TCONS_00023317-exon-sc0000450-1491911889:204381..204404 | TCONS_00023317-exon-sc0000450-1491911889:204381..204404 | Clytia hemisphaerica | exon |
| TCONS_00023317-exon-sc0000450-1491911889:195436..197926 | TCONS_00023317-exon-sc0000450-1491911889:195436..197926 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:195436..204404 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019530 | Intra-flagellar_transport_57 |
Blast
BLAST of TCONS_00023317 vs. Swiss-Prot (Human)
Match: IFT57 (Intraflagellar transport protein 57 homolog OS=Homo sapiens GN=IFT57 PE=1 SV=1) HSP 1 Score: 366.311 bits (939), Expect = 3.249e-117 Identity = 210/391 (53.71%), Postives = 285/391 (72.89%), Query Frame = 3
Query: 51 DGGGEVV-----GSSFMNTFIXXXXXXXXXXXXXXXXXFCRGWGFKAFSRHYFAVPTNPGEQFFAFTNIVAWLLNQCSKSFDRPQEYDDPNATISEILDQSRSLGITVDFPPAKLKSGHGEQVIYLVNKLCCEALKSQMFSWKRPXXXXXXXXXXXXXXXXXXLTMDKLNXXXXXXXXXXXXXXXXXXXXSGMKQQNFANDFG--TKPESMLESNVDANEWKLEIERVLPLLKVHIRADNKDWRNHYEQMQQYSTGISQTLQETQTQLDKLHQEISKTLEKVASREKYINNQLEGKIQDFRSKQDNLAVLKEKYNQSSGGVTELTQQLSQITDELEQVKIQMDERGTNMTDAGPLVRIKQALSKLKQECIEMDLEVGVLEHALLQGKVREK 1202
+G GEVV G+++ + F++ME+L++KLKLL YE+EF R KA SRHYFA+PTNPGEQF+ F + AWL+N+ + F++PQEYDDPNATIS IL + RS G T DFPP+KLKSG+GE V Y+++ EALK F+WKRP Y EE EE++ EDDAELT++K+++E EE + + +K Q + D K E +LES DA EW LE+ERVLP LKV IR DNKDWR H +QM Q+ +GI L+ET+ LDKLH EI++TLEK++SREKYINNQLE +Q++R+ Q L+ KE+Y Q +GGVTE T+ LS++ +ELE+VK +M+E+G++MTD PLV+IKQ+L+KLKQE +EMD+ +G++EH LLQ K++EK
Sbjct: 23 EGTGEVVLERGPGAAY-HMFVVMEDLVEKLKLLRYEEEFLRKSNLKAPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNATISNILSELRSFGRTADFPPSKLKSGYGEHVCYVLDCFAEEALKYIGFTWKRPIYPVEELEEESVAEDDAELTLNKVDEEFVEEETDNEENFIDLNV---LKAQTYHLDMNETAKQEDILESTTDAAEWSLEVERVLPQLKVTIRTDNKDWRIHVDQMHQHRSGIESALKETKGFLDKLHNEITRTLEKISSREKYINNQLENLVQEYRAAQAQLSEAKERYQQGNGGVTERTRLLSEVMEELEKVKQEMEEKGSSMTDGAPLVKIKQSLTKLKQETVEMDIRIGIVEHTLLQSKLKEK 409
The following BLAST results are available for this feature:
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