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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023315 ID=TCONS_00023315|Name=TCONS_00023315|organism=Clytia hemisphaerica|type=transcript|length=5658bpRun BLAST on NCBI protein sequence of TCONS_00023315-protein >TCONS_00023315-protein ID=TCONS_00023315-protein|Name=TCONS_00023315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=629bp MYGFFNHAFEKFITLQYGEDKWEIIRLEAGVFEESFDEKIVYDDNMIHELRun BLAST on NCBI transcript from alignment at sc0000450:181468..195187- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023315 ID=TCONS_00023315|Name=TCONS_00023315|organism=Clytia hemisphaerica|type=transcript|length=13720bp|location=Sequence derived from alignment at sc0000450:181468..195187- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000450:181468..195187- >TCONS_00023315 ID=TCONS_00023315|Name=TCONS_00023315|organism=Clytia hemisphaerica|type=CDS|length=13230bp|location=Sequence derived from alignment at sc0000450:181468..195187- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023315 vs. Swiss-Prot (Human)
Match: GCYB1 (Guanylate cyclase soluble subunit beta-1 OS=Homo sapiens GN=GUCY1B3 PE=1 SV=1) HSP 1 Score: 476.863 bits (1226), Expect = 7.272e-149 Identity = 269/614 (43.81%), Postives = 379/614 (61.73%), Query Frame = 1
Query: 160 MYGFFNHAFEKFITLQYGEDKWEIIRLEAGVFEES-FDEKIVYDDNMIHELIDAAADVLDIEP-EVLQADFGTCYFEHCLGTSHGDLLGKLGRNLYDFLSNVDSLHDYLSLQYAGLKIPTFRVKEDSFRRCITLQYYSDREDLEFITKGIIEQAAKKLFDLSVTVQIFFDANQ--DTNTFLITANDPDDSDRMFPKVMELSRDLIPHANEPKVSPLEFCKIFPFHMIFNRDMELLQIGTTLRRILKDINNFKTPPVAKFFTLSRPQIDFTFEAIYSRLNNTFVMTSLDDVVKPSLVLQQAHQTGSLPRRSNIRLKGEMIYIDDRDAMLFMCSPSVSNIADMRNKGLCLSDIPIHDATRDLVLLSENIQKELELTQQLRVVSDHLTKIHSELESEMHLYNRLLESVLPNSIAASLCEMKAVPAERFDCVTLMFSGINKFADLCQGMESHE----IVSMLNDLYTKFDVFVTFLEG-FAYKVETVGDTYMTASGLPERVSNHAYVMCTLALDMQDAAKEVTIKGKKIMLTFGIHSGEVVAGVIGQKMPRYCVFGNAVNLTSRTQSTGIPGRINVTEYTYR-LLXXXXXXXXXXXXKRGQVKMKGKAEPMTTYILRR 1971
MYGF NHA E + YG + WE I+ EA + EE F +I+YDD+ ++L+ AA+ VL++ E+LQ FG +F C + + +L LG N+ +FL N+D+LHD+L+ Y G++ P+FR + + + L YYS+RE L+ I GII+ A+++ + +++ N+ D FLI + + D +L R E ++SP FCK FPFH+IF+RD+ + Q G + R+L + + F+L RP ID +F I S +N FV+ S + ++ + + TG+ S +RLKG+MIY+ + D++LF+CSPSV N+ D+ +GL LSDIP+HDATRDLVLL E ++E +LTQ+L +++D L LE E + LL SVLP S+A L + VPA+R+D VT++FSGI F C S E IV++LNDLYT+FD + F YKVETVGD YMT SGLPE +HA +C LALDM + A +V + G+ + +T GIH+GEVV GVIGQ+MPRYC+FGN VNLTSRT++TG G+INV+EYTYR L+ NS FH E RG V MKGK EPM + L R
Sbjct: 1 MYGFVNHALELLVIRNYGPEVWEDIKKEAQLDEEGQFLVRIIYDDSKTYDLVAAASKVLNLNAGEILQM-FGKMFFVFCQESGYDTILRVLGSNVREFLQNLDALHDHLATIYPGMRAPSFRCTDAEKGKGLILHYYSEREGLQDIVIGIIKTVAQQIHGTEIDMKVIQQRNEECDHTQFLIEEKESKEEDFY----EDLDRFEENGTQESRISPYTFCKAFPFHIIFDRDLVVTQCGNAIYRVLPQLQPGNCS-LLSVFSLVRPHIDISFHGILSHINTVFVLRSKEGLLDVEKLECEDELTGT--EISCLRLKGQMIYLPEADSILFLCSPSVMNLDDLTRRGLYLSDIPLHDATRDLVLLGEQFREEYKLTQELEILTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRHKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSR 606 The following BLAST results are available for this feature:
BLAST of TCONS_00023315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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