TCONS_00023312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023312
Unique NameTCONS_00023312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023312 ID=TCONS_00023312|Name=TCONS_00023312|organism=Clytia hemisphaerica|type=transcript|length=1272bp
CCCGATTGACCTGACAACAGTGCATAAAGTTACGTAACATTCCttgaaag
tattttttgatATTGTGCTAGGTTCCCTaaataaactttaaaacaaaaat
gtacaaacaaaaaaatatttattccacGGATGAGTACAATAGTTAAAAAT
GAGAAGCTTTCTCGTAATTGGCAAAGAAAATATCTAATTGAAATAATACT
TTTGTAAGATTGCAAGACTTTTCATTAATGGCTACAACAGTAGTGCGAAA
TATTTGCCCCAGAGAGTAAACCtgactaaaataatttaaacaCTTGAGTA
GCCTGGGATGTGCAGGCCCAATTGGGTAGATTTATCGAAGTGATTCAAAG
GTTTACAAAGGGCCCTTGACGTATGCAGTGGAGAGCCTATTCTAAAAATT
AATTTCCGTTTGCAGCAGAGATAGTCACTGAGCTTTTTGAGTAGCTAGAA
ATGTCACTTTTTAAGAACCATTCCGAATCAATATGAAAGTAATTAATTGA
AAAagaacttgaaaatttcaaaatagaattTCTTGGCCATGTGAGGTGCC
ATGGCAACGGGGCACCCTGTTATCATGCAAATCGAGCCCTCTTCATGTTA
TGAATAATTGCTCTAacgttaaaaaatatttaccctactaaaattcaaaa
tgagatgcataaatttgtttaaaaatcaatttcataaGTAATATATTAAT
AAAAATTTCGACCGTGCAAAAGTGCGATTCTTGAAATCTATTCATTTCTt
agatttcatttgtttattgTAGTCTCTAAGCATTTTGTTGAAGATTTCGG
TGAATCCAGATTTATCTTGACCTCCAATTTGCAATGGTTTTGCATCATTG
AAGCCAACTATGGAAATCTGGAAAAGTGGGATTCCCAACAACCCTCTTTT
CTTAGTTTTCTGAATTTCACCATAAAGTTTTTTAATGTTATCTTCACTTG
TAAAGTAATTCAATGCGTGTTCTGGGTTGAGACCAACTTGAGCTGCAAGA
CTTTGCAATACTTTATCACTGTTGATATTCAAAGCTTCTTCAAAATATTG
TTGACATATCAAATAGTAAAGTTCGGTCTCTTTCTGTGGACCCTGGTATT
CACGTGCAAATTGTAATAATAAATGACTTTTCAATGAATGAACCACATAC
CTCTCTGGATCAAACTTTATGCCctagaaataataaaaaaatgtttcctt
TCTATAGCAGATTATGTCCTTTAATTTGGGCACTCCAGGGCATTCGCAAC
CCCTCTAAAAATTCGTTTAATT
Run BLAST on NCBI

transcript from alignment at sc0000450:125285..126611-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023312 ID=TCONS_00023312|Name=TCONS_00023312|organism=Clytia hemisphaerica|type=transcript|length=1327bp|location=Sequence derived from alignment at sc0000450:125285..126611- (Clytia hemisphaerica)
CCCGATTGACCTGACAACAGTGCATAAAGTTACGTAACATTCCTTGAAAG
TATTTTTTGATATTGTGCTAGGTTCCCTAAATAAACTTTAAAACAAAAAT
GTACAAACAAAAAAATATTTATTCCACGGATGAGTACAATAGTTAAAAAT
GAGAAGCTTTCTCGTAATTGGCAAAGAAAATATCTAATTGAAATAATACT
TTTGTAAGATTGCAAGACTTTTCATTAATGGCTACAACAGTAGTGCGAAA
TATTTGCCCCAGAGAGTAAACCTGACTAAAATAATTTAAACACTTGAGTA
GCCTGGGATGTGCAGGCCCAATTGGGTAGATTTATCGAAGTGATTCAAAG
GTTTACAAAGGGCCCTTGACGTATGCAGTGGAGAGCCTATTCTAAAAATT
AATTTCCGTTTGCAGCAGAGATAGTCACTGAGCTTTTTGAGTAGCTAGAA
ATGTCACTTTTTAAGAACCATTCCGAATCAATATGAAAGTAATTAATTGA
AAAAGAACTTGAAAATTTCAAAATAGAATTTCTTGGCCATGTGAGGTGCC
ATGGCAATGGGGCACCCTGTTATCATGCAAATCGAGCCCNGCCATGTGAG
GTGCCATGGCAACGGGGCACCCTGTTATCATGCAAATCGAGCCCTCTTCA
TGTTATGAATAATTGCTCTAACGTTAAAAAATATTTACCCTACTAAAATT
CAAAATGAGATGCATAAATTTGTTTAAAAATCAATTTCATAAGTAATATA
TTAATAAAAATTTCGACCGTGCAAAAGTGCGATTCTTGAAATCTATTCAT
TTCTTAGATTTCATTTGTTTATTGTAGTCTCTAAGCATTTTGTTGAAGAT
TTCGGTGAATCCAGATTTATCTTGACCTCCAATTTGCAATGGTTTTGCAT
CATTGAAGCCAACTATGGAAATCTGGAAAAGTGGGATTCCCAACAACCCT
CTTTTCTTAGTTTTCTGAATTTCACCATAAAGTTTTTTAATGTTATCTTC
ACTTGTAAAGTAATTCAATGCGTGTTCTGGGTTGAGACCAACTTGAGCTG
CAAGACTTTGCAATACTTTATCACTGTTGATATTCAAAGCTTCTTCAAAA
TATTGTTGACATATCAAATAGTAAAGTTCGGTCTCTTTCTGTGGACCCTG
GTATTCACGTGCAAATTGTAATAATAAATGACTTTTCAATGAATGAACCA
CATACCTCTCTGGATCAAACTTTATGCCCTAGAAATAATAAAAAAATGTT
TCCTTTCTATAGCAGATTATGTCCTTTAATTTGGGCACTCCAGGGCATTC
GCAACCCCTCTAAAAATTCGTTTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013107XLOC_013107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023312-exon-sc0000450-1575043694:126067..126611TCONS_00023312-exon-sc0000450-1575043694:126067..126611Clytia hemisphaericaexon
TCONS_00023312-exon-sc0000450-1575043694:125285..126011TCONS_00023312-exon-sc0000450-1575043694:125285..126011Clytia hemisphaericaexon
TCONS_00023312-exon-sc0000450-1510915933:126067..126611TCONS_00023312-exon-sc0000450-1510915933:126067..126611Clytia hemisphaericaexon
TCONS_00023312-exon-sc0000450-1510915933:125285..126011TCONS_00023312-exon-sc0000450-1510915933:125285..126011Clytia hemisphaericaexon
TCONS_00023312-exon-sc0000450-1491911889:126067..126611TCONS_00023312-exon-sc0000450-1491911889:126067..126611Clytia hemisphaericaexon
TCONS_00023312-exon-sc0000450-1491911889:125285..126011TCONS_00023312-exon-sc0000450-1491911889:125285..126011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000450supercontigsc0000450:125285..126611 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.20458	0	0	0	4.41161	2.47194	4.37803	4.56984	1.29505	1.53492	0.455842	0.546992	0.133535	0	0	0.466358	0	0.11587	0	0	0.17076	0	0	0.299602	0.385132	1.5552	0	0	0.322924	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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