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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023310 ID=TCONS_00023310|Name=TCONS_00023310|organism=Clytia hemisphaerica|type=transcript|length=3210bpRun BLAST on NCBI transcript from alignment at sc0000450:92943..113675- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023310 ID=TCONS_00023310|Name=TCONS_00023310|organism=Clytia hemisphaerica|type=transcript|length=20733bp|location=Sequence derived from alignment at sc0000450:92943..113675- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023310 vs. Swiss-Prot (Human)
Match: SAP (Prosaposin OS=Homo sapiens GN=PSAP PE=1 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 7.634e-41 Identity = 131/473 (27.70%), Postives = 217/473 (45.88%), Query Frame = 3
Query: 423 IRQSLKHLHKMKQVKTDYCTTCEQYVGTVHLILSNQETKTQVLNELTSLCNQYVK---SSELCPLISTLGGSVYDELVAYLATPQKLCTTLGLC-SGGKKIALL------------QLQQTKNIVQFSRMLPAV------------KSLNGELCDVCKFGVNYLDSMLKDNATEAE-LKQAVLGLCGDLPPSVSSICKSYVNSYWSAAIGLIVSELNDSAALCTTLHACTSV-----QKATPAKKVQAN--------------------PVTCEVCEYAMNYLDSILTDKSTEQEIISALDSLCSKLPSSLSGECTTLINNYGEAILQMLVQEFKPDVICKELGLCTSKL-------VKKTKSNAVTCELCEYAMSYLDSILTDKSTEQEITSAVESLCSKLPASISGECKSLVDEYSETIIKMLIEDFQPAFVCQKLGLCTSTRKAKKPVVQSLKVKANP-VTCEVCEYAMQ 1655
++ L+ + VK+ C C+ V +L + T+ ++L L C+ K S+ ++ + + D + ++ P ++C+ L LC S K +A L +L T+ + F +P + NG++C C V + + ++ N+T + L + V C L P ++ ICK+Y++ Y AI +++ +C + C V Q PAK N V CEVCE+ + + ++ + TE+EI+ A D +CSKLP SLS EC +++ YG +IL +L++E P+++C L LC+ V + K CE+C+ + YLD L ST+QEI +A+E CS LP +C V EY +I++L+E P+FVC K+G C S A KP++ + K P C+ E A Q
Sbjct: 45 VKHCLQTVWNKPTVKSLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLYPQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMH--MQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGF-CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACPS---AHKPLLGTEKCIWGPSYWCQNTETAAQ 511 HSP 2 Score: 157.918 bits (398), Expect = 2.759e-40 Identity = 107/428 (25.00%), Postives = 195/428 (45.56%), Query Frame = 3
Query: 1071 VTCEVCEYAMNYLDSILTDKSTEQEIISALDSLCSKLP-SSLSGECTTLINNYGEAILQMLVQEF-KPDVICKELGLCTS---------------------------------------------KLVKKTKSNAVTCELC-EYAMSYLDSILTDKSTEQEITSAVESLCSKLPASISGECKSLVDEYSETIIKMLIEDFQPAFVCQKLGLCTSTRK-----------AKKPVVQSLKV----------KANPVTCEVCEYAMQYLDSMLSDNATEAEIRQGLDQLCGYLPASVSGECTSLVNQYADTIIKLIVQELDPATICKELQLCAASK------KVTNVKDDLTCTVCQDALEVLDNIIKENKTEEAIKNGLDKLCSLLPSSLSGECQSLVTLYGDAILNLLINEIDPSAICKELKLCASARK 2129
+ C++C+ + +L D +TE+EI+ L+ C LP ++S C ++++Y IL ++ E +P +C L LC S + + K N C+ C + ++ T+ + Q + V+ C +L ++ CK+ + +YSE I+M++ QP +C +G C ++ A K V+ +L++ + V CEVCE+ ++ + ++ +N TE EI D++C LP S+S EC +V+ Y +I+ ++++E+ P +C L LC+ ++ VT KD C VC+ + LD +++N T++ I L+K CS LP +C V Y ++ +L+ +DPS +C ++ C SA K
Sbjct: 61 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLYPQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMH-MQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACPSAHK 487 HSP 3 Score: 150.984 bits (380), Expect = 5.207e-38 Identity = 113/445 (25.39%), Postives = 200/445 (44.94%), Query Frame = 3
Query: 1278 CKELGLCTSKLVKKTKSNAVTCELCEYAMSYLDSILTDKSTEQEITSAVESLCSKLP-ASISGECKSLVDEYSETIIKMLIEDF-QPAFVCQKLGLCTSTRKAKKPVVQSLKVKANPV----------------------------------TCEVCEYAMQYLDSMLSDNATEAEIRQGL----DQLCGYLPASVSGECTSLVNQYADTIIKLIVQELDPATICKELQLC---------------AASKKV--------------TNVKDDLTCTVCQDALEVLDNIIKENKTEEAIKNGLDKLCSLLPSSLSGECQSLVTLYGDAILNLLINEIDPSAICKELKLCASAR----KVVKTPIKNEVTCEFCKYAMTYLDNQLKSDRTEAKIKSALDSLCTHLPSSVSGECESLINSNLDFLVQLLVRELDPTTICDALKVCTTS 2393
C + C + K ++ C++C+ ++ +L D +TE+EI +E C LP ++S CK +VD Y I+ ++ + +P VC L LC S +K + ++++N + +VC+ +Q + + + T + Q L + C L ++ C + ++QY++ I++++ + P IC + C ASK V K D+ C VC+ ++ + +I NKTE+ I + DK+CS LP SLS ECQ +V YG +IL++L+ E+ P +C L LC+ R V T K+ CE CK + YLD L+ + T+ +I +AL+ C+ LP +C+ + L+++LV +DP+ +C + C ++
Sbjct: 42 CGAVKHCLQTVWNKPTVKSLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLYPQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMH-MQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACPSA 485 HSP 4 Score: 138.272 bits (347), Expect = 6.149e-34 Identity = 108/436 (24.77%), Postives = 202/436 (46.33%), Query Frame = 3
Query: 1584 KPVVQSLKVKANPVTCEVCEYAMQYLDSMLSDNATEAEIRQGLDQLCGYLP-ASVSGECTSLVNQYADTIIKLIVQELD-PATICKELQLCAASKKV-----------TNVKDDLTCT-------------------------------VCQDALEVLDNI---IKENKTE-EAIKNGLDKLCSLLPSSLSGECQSLVTLYGDAILNLLINEIDPSAICKELKLC---------------ASARKVV------------KTPIKNEVTCEFCKYAMTYLDNQLKSDRTEAKIKSALDSLCTHLPSSVSGECESLINSNLDFLVQLLVRELDPTTICDALKVCTTSP----TKVKTNPVE---CEVCQSAIGYLDSVLTEQSTEDEIKTAVKSLCSHLPAAIDNECDALITEYGDELIKLVVQQIKPDTICKALKVC 2645
KP V+SL C++C+ + ML DNATE EI L++ C +LP ++S C +V+ Y I+ +I E+ P +C L LC + +K +N +L T VCQD ++++ +I ++ N T +A+ + + C L ++ C++ ++ Y + + ++++ + P IC + C +++ V+ + P K++V CE C++ + + + +++TE +I A D +C+ LP S+S EC+ ++++ ++ +L+ E+ P +C L +C+ + T T P + CEVC+ +GYLD L + ST+ EI A++ CS LP +CD + EY LI+++V+ + P +C + C
Sbjct: 55 KPTVKSL-------PCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLYPQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMH-MQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 482 HSP 5 Score: 106.301 bits (264), Expect = 1.362e-23 Identity = 85/317 (26.81%), Postives = 150/317 (47.32%), Query Frame = 3
Query: 141 AKEGDDICAECQEYVGLLHGMLASNSTR-QMIIDELTSACKQLPDAYQEMCQAMIENYVEKAIDMMEQYTTDAKAVCTSLGLCNG-KKLSHKVMIHIRQSLKHL------------HKMKQVKTDYCTTCEQYVGTVHLILSNQETKTQVLNELTSLCNQYVKS-SELC-PLISTLGGSVYDELVAYLATPQKLCTTLGLCSGGKKIAL-LQLQQTKNIVQFSRMLPAVKSLNGELCDVCKFGVNYLDSMLKDNATEAELKQAVLGLCGDLPPSVSSICKSYVNSYWSAAIGLIVSELNDSAALCTTLHACTSVQKA 1040
K+ D+C +C + V + + +NST Q +++ + C +L ++C+ I Y E AI MM K +C +G C+ K++ + ++ + + K++ H++ YC CE V V ++ N +T+ ++L+ +C++ KS SE C ++ T G S+ L+ + +P+ +C+ L LCSG + AL + + Q K +G C+VCK V YLD L+ N+T+ E+ A+ C LP C +V Y I ++V E+ D + +C + AC S K
Sbjct: 191 PKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMH--MQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALELVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEV-SPELVCSMLHLCSGTRLPALTVHVTQPK---------------DGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILV-EVMDPSFVCLKIGACPSAHKP 488 The following BLAST results are available for this feature:
BLAST of TCONS_00023310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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