TCONS_00023297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023297
Unique NameTCONS_00023297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023297 ID=TCONS_00023297|Name=TCONS_00023297|organism=Clytia hemisphaerica|type=transcript|length=313bp
TTACCTGGAGTAGTAAATCGACTTGCGTGTTGGGACGTGTTCCGACTTCT
GCGCATGCCCCCACCTGATCCTGCGCGACTTCGATTCAAAGTAAAGCCTC
CACCGACTGCAGAATTGGTTAGCAGACCATCAGTATTGGGAATTGAACCA
TAAGTAGACATCATACTATCAGCAGTGAAAGAGTAAGCAGGATCTCTAGA
TTTCTCAGCGCGTCTCAAAATGTAAGTCGTCATCGGTTCAGCTTTGCCCT
TCATTTTGACTTGCCCTCTTTTTTCGAAATGAAAATGCTCAAAACTGTTA
CTTTCTTCCAGCA
Run BLAST on NCBI

transcript from alignment at sc0000450:185863..186248+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023297 ID=TCONS_00023297|Name=TCONS_00023297|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0000450:185863..186248+ (Clytia hemisphaerica)
TTACCTGGAGTAGTAAATCGACTTGCGTGTTGGGACGTGTTCCGACTTCT
GCGCATGCCCCCACCTGATCCTGCGCGACTTCGATTCAAAGTAAAGCCTC
CACCGACTGCAGAATTGGTTAGCAGACCATCAGTATTGGGAATTGAACCA
TAAGTAGACATCATACTATCAGCAGTGAACGAGTAAGCAGGATCTCTGGA
TTTCTCAGCGCGTCTCAAANCCATAAGTTGACATCATACTATCAGCAGTG
AAAGAGTAAGCAGGATCTCTAGATTTCTCAGCGCGTCTCAAAATGTAAGT
CGTCATCGGTTCAGCTTTGCCCTTCATTTTGACTTGCCCTCTTTTTTCGA
AATGAAAATGCTCAAAACTGTTACTTTCTTCCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013101XLOC_013101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023297-exon-sc0000450-1491911889:185863..186021TCONS_00023297-exon-sc0000450-1491911889:185863..186021Clytia hemisphaericaexon
TCONS_00023297-exon-sc0000450-1510915933:185863..186021TCONS_00023297-exon-sc0000450-1510915933:185863..186021Clytia hemisphaericaexon
TCONS_00023297-exon-sc0000450-1575043694:185863..186021TCONS_00023297-exon-sc0000450-1575043694:185863..186021Clytia hemisphaericaexon
TCONS_00023297-exon-sc0000450-1491911889:186095..186248TCONS_00023297-exon-sc0000450-1491911889:186095..186248Clytia hemisphaericaexon
TCONS_00023297-exon-sc0000450-1510915933:186095..186248TCONS_00023297-exon-sc0000450-1510915933:186095..186248Clytia hemisphaericaexon
TCONS_00023297-exon-sc0000450-1575043694:186095..186248TCONS_00023297-exon-sc0000450-1575043694:186095..186248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000450supercontigsc0000450:185863..186248 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38011	0.301742	0.941603	0	16.3317	17.7838	9.54669	20.8681	24.5625	32.8012	40.6184	89.4244	3.36674	2.8823	0.250283	3.08798	3.40524	0	4.89187	1.93429	1.47742	0.836267	3.02445	3.28296	3.0792	1.97068	44.187	42.5822	1.9528	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001054A/G_cyclase
IPR029787Nucleotide_cyclase
Vocabulary: Biological Process
TermDefinition
GO:0009190cyclic nucleotide biosynthetic process
GO:0035556intracellular signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0016849phosphorus-oxygen lyase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009190 cyclic nucleotide biosynthetic process
biological_process GO:0035556 intracellular signal transduction
molecular_function GO:0016849 phosphorus-oxygen lyase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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