TCONS_00023283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023283
Unique NameTCONS_00023283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023283 ID=TCONS_00023283|Name=TCONS_00023283|organism=Clytia hemisphaerica|type=transcript|length=553bp
cgattgacaccgtctggacgtATATGGAAGTCCGAAAAAGCTTCTGTGTA
TCCTGATGTCGATTAGACTGCatggggtgagcatttgcaacGGGTTTTCC
ATACCCAGTGTGAGAATCTTACAATGAGaacttatttttcaatattcttA
GAATGAGAATGATATACATTTTTCTCAAACAAAAGTATGCTTGGGTGATT
TGCAGGAAATTGTTCCGaaaggctgaaaaaattcttaaaaaattaattcc
cacgtCTCAGATGCAATTTAAAGTATGAGGCCCTAGGTCCTAGGAGGAAG
AAAACACAAAATAGGCAGACTAAGTAAGACGAGTATGAgaagtttttgaa
agtggtcAAAATACACTGATCTAGGTAGAGTCGAGTcgccagtgcacgaa
cggccccagtgcacgaacaagcatctttgaacttgaaaaaaacaaccaaa
aacaaacttctatagaacttcctttgtgcagcagaatcATCAAACTATCC
Cttgcaatctctccaaaaattaagataaacagagcactagaacaacacca
aac
Run BLAST on NCBI

transcript from alignment at sc0000449:188465..189017

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023283 ID=TCONS_00023283|Name=TCONS_00023283|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0000449:188465..189017 (Clytia hemisphaerica)
gtttggtgttgttctagtgctctgtttatcttaatttttggagagattgc
aaGGGATAGTTTGATgattctgctgcacaaaggaagttctatagaagttt
gtttttggttgtttttttcaagttcaaagatgcttgttcgtgcactgggg
ccgttcgtgcactggcgACTCGACTCTACCTAGATCAGTGTATTTTgacc
actttcaaaaacttcTCATACTCGTCTTACTTAGTCTGCCTATTTTGTGT
TTTCTTCCTCCTAGGACCTAGGGCCTCATACTTTAAATTGCATCTGAGac
gtgggaattaattttttaagaattttttcagcctttCGGAACAATTTCCT
GCAAATCACCCAAGCATACTTTTGTTTGAGAAAAATGTATATCATTCTCA
TTCTaagaatattgaaaaataagttCTCATTGTAAGATTCTCACACTGGG
TATGGAAAACCCgttgcaaatgctcaccccatGCAGTCTAATCGACATCA
GGATACACAGAAGCTTTTTCGGACTTCCATATacgtccagacggtgtcaa
tcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013093XLOC_013093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023283-exon-sc0000449-1491911889:188465..189017TCONS_00023283-exon-sc0000449-1491911889:188465..189017Clytia hemisphaericaexon
TCONS_00023283-exon-sc0000449-1510915933:188465..189017TCONS_00023283-exon-sc0000449-1510915933:188465..189017Clytia hemisphaericaexon
TCONS_00023283-exon-sc0000449-1575043694:188465..189017TCONS_00023283-exon-sc0000449-1575043694:188465..189017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000449supercontigsc0000449:188465..189017 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.20942	0.207677	0.851942	0.463171	0.836189	0.880194	0.532491	0.373964	0.69589	0.107861	0.104488	0.552392	0.206144	0.292024	0.541598	0.251385	0.310838	0.241934	0.998783	0.348818	0.70336	0.589098	0.237011	0	0.333768	1.48908	1.0009	0.756343	0	0.352324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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