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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023281 ID=TCONS_00023281|Name=TCONS_00023281|organism=Clytia hemisphaerica|type=transcript|length=874bp
atcgcaaaatttaatacatGTGAAAGGtttcttggaaaaaaatttcgcga
cttACGAAAATGTAGTACACGCGAAATGTATACACTTTCaggtaaaaaat
caaattaaaaaaaaaatcaattgaataaatcaaacaaagttaAGTTTTTT
AAACGTTCAATTAGCGAGGTTCAAGACAGCAGTGACTTTAAAACACCAGA
AACCCACTCTCTTGAAGATTCCGACCTTGAAATTTTGGCACTGAGCTCAT
TTGTCGACTTGGTATCAATCTGGTACGATAACCTTTTTAGCTCAGAAGCA
TGTAGATTGAACGTCTTTAAGATTTTTGATAAGCTGTACTTCCCATATTT
GTCTAAAAGCTCGTACAAAAGCAGTATTTCGACATCAGACCAAGGACCTT
TACGTGCTTCTTCACCAACACATGTAAGATGCTCTGCTGTCGTAATTCGC
TTTGTAGATAGCTGGGGTTTCGATCTTTTTCTGGACTTTTTAATGGGGTC
CCCCTGATTAATTCCAAAAGGATTACCACAACATCTGCAATTGCAACCTG
AACATCCAGTACCAGAGTTGAAACATCCACATCTGGTTTTGTATGAAAAG
GCTTCACAACAATATTTTCGATCGGAATTAGGTTTTCCACAGTTACACGG
ACCTGTTTTGGCTTTCTTCAAAGATGGCCCCTCATTGATCCTCTCGACAC
ACGGATAGAACAATTGATCAAGATATGCGATGTGGATAGAGGTTTTCATG
GATACACAAGTGACGGGCAAAATTGTGATAACAGGGACATCAGCAAAGCC
TGTGTAAACGATTAAACCAACTGATATGAAATTAACTAATTTTTGGATGT
CGGCTGAACGGCTAACACTTTGGC Run BLAST on NCBI protein sequence of TCONS_00023281-protein >TCONS_00023281-protein ID=TCONS_00023281-protein|Name=TCONS_00023281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
QSVSRSADIQKLVNFISVGLIVYTGFADVPVITILPVTCVSMKTSIHIAY
LDQLFYPCVERINEGPSLKKAKTGPCNCGKPNSDRKYCCEAFSYKTRCGC
FNSGTGCSGCNCRCCGNPFGINQGDPIKKSRKRSKPQLSTKRITTAEHLT
CVGEEARKGPWSDVEILLLYELLDKYGKYSLSKILKTFNLHASELKRLSY
QIDTKSTNELSAKISRSESSREWVSGVLKSLLS Run BLAST on NCBI transcript from alignment at sc0000449:166471..167344 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023281 ID=TCONS_00023281|Name=TCONS_00023281|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0000449:166471..167344 (Clytia hemisphaerica)
GCCAAAGTGTTAGCCGTTCAGCCGACATCCAAAAATTAGTTAATTTCATA
TCAGTTGGTTTAATCGTTTACACAGGCTTTGCTGATGTCCCTGTTATCAC
AATTTTGCCCGTCACTTGTGTATCCATGAAAACCTCTATCCACATCGCAT
ATCTTGATCAATTGTTCTATCCGTGTGTCGAGAGGATCAATGAGGGGCCA
TCTTTGAAGAAAGCCAAAACAGGTCCGTGTAACTGTGGAAAACCTAATTC
CGATCGAAAATATTGTTGTGAAGCCTTTTCATACAAAACCAGATGTGGAT
GTTTCAACTCTGGTACTGGATGTTCAGGTTGCAATTGCAGATGTTGTGGT
AATCCTTTTGGAATTAATCAGGGGGACCCCATTAAAAAGTCCAGAAAAAG
ATCGAAACCCCAGCTATCTACAAAGCGAATTACGACAGCAGAGCATCTTA
CATGTGTTGGTGAAGAAGCACGTAAAGGTCCTTGGTCTGATGTCGAAATA
CTGCTTTTGTACGAGCTTTTAGACAAATATGGGAAGTACAGCTTATCAAA
AATCTTAAAGACGTTCAATCTACATGCTTCTGAGCTAAAAAGGTTATCGT
ACCAGATTGATACCAAGTCGACAAATGAGCTCAGTGCCAAAATTTCAAGG
TCGGAATCTTCAAGAGAGTGGGTTTCTGGTGTTTTAAAGTCACTGCTGTC
TTGAACCTCGCTAATTGAACGTTTAAAAAACTtaactttgtttgatttat
tcaattgattttttttttaatttgattttttacctGAAAGTGTATACATT
TCGCGTGTACTACATTTTCGTaagtcgcgaaatttttttccaagaaaCCT
TTCACatgtattaaattttgcgat Coding sequence (CDS) from alignment at sc0000449:166471..167344 >TCONS_00023281 ID=TCONS_00023281|Name=TCONS_00023281|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000449:166471..167344 (Clytia hemisphaerica)
CAAAGTGTTAGCCGTTCAGCCGACATCCAAAAATTAGTTAATTTCATATC
AGTTGGTTTAATCGTTTACACAGGCTTTGCTGATGTCCCTGTTATCACAA
TTTTGCCCGTCACTTGTGTATCCATGAAAACCTCTATCCACATCGCATAT
CTTGATCAATTGTTCTATCCGTGTGTCGAGAGGATCAATGAGGGGCCATC
TTTGAAGAAAGCCAAAACAGGTCCGTGTAACTGTGGAAAACCTAATTCCG
ATCGAAAATATTGTTGTGAAGCCTTTTCATACAAAACCAGATGTGGATGT
TTCAACTCTGGTACTGGATGTTCAGGTTGCAATTGCAGATGTTGTGGTAA
TCCTTTTGGAATTAATCAGGGGGACCCCATTAAAAAGTCCAGAAAAAGAT
CGAAACCCCAGCTATCTACAAAGCGAATTACGACAGCAGAGCATCTTACA
TGTGTTGGTGAAGAAGCACGTAAAGGTCCTTGGTCTGATGTCGAAATACT
GCTTTTGTACGAGCTTTTAGACAAATATGGGAAGTACAGCTTATCAAAAA
TCTTAAAGACGTTCAATCTACATGCTTCTGAGCTAAAAAGGTTATCGTAC
CAGATTGATACCAAGTCGACAAATGAGCTCAGTGCCAAAATTTCAAGGTC
GGAATCTTCAAGAGAGTGGGTTTCTGGTGTTTTAAAGTCACTGCTGTCTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023281-exon-sc0000449-1491911889:166471..167344 | TCONS_00023281-exon-sc0000449-1491911889:166471..167344 | Clytia hemisphaerica | exon |
| TCONS_00023281-exon-sc0000449-1510915933:166471..167344 | TCONS_00023281-exon-sc0000449-1510915933:166471..167344 | Clytia hemisphaerica | exon |
| TCONS_00023281-exon-sc0000449-1575043694:166471..167344 | TCONS_00023281-exon-sc0000449-1575043694:166471..167344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000449 | supercontig | sc0000449:166471..167344 . |
Blast
The following BLAST results are available for this feature:
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