TCONS_00023251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023251
Unique NameTCONS_00023251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023251 ID=TCONS_00023251|Name=TCONS_00023251|organism=Clytia hemisphaerica|type=transcript|length=1397bp
TAAATGATGGAAAAGACAATGGCGTGATCAAGCACTGttcattcaaaaag
aaatcTCCCTCTACTTACTTGAAAGTCTTCGTATCTTCGAATATGAGAAT
AAACAACTGCAATGGCTGCTGTAAACGTTGGTTTGTCACTTTCGATGGAC
ATGAATGTGCACCTGTGCCGATAGACGGTGTCGTTTATATGAGAGCAGGT
GCTGGAAACCGACTTAAAGATCTACATCGACCACGAGTTATCGCTGGACA
TTGTAAGAtctcgaaaaaaaaagaagtcgaTGTAGCTCTCAATGTTGGTA
ATTGTCAAGGCTACGGGAATGCAGACGCACACACTGGGTGGAAGTCATCA
ACACGAATTTACATTGAAGAAGTTGACCAGCCACAATCTTAAAACAAGTT
TTTTCTTGTGAAAAATATAAACTAAAGATAAACACACATTCTTAGGGGTA
TATTATTAAAAACTCTTTCCTACTTTAAAAGATATACCTTTTGAAAGCTT
CAGGGTAGCGTAGAAAGTGAATGAGTCCTAGAAACAAGAGTTTCTATCAA
AATAGCTGAAAACCTATAATCTTTAAACACAGTTTATTGAATTTATAACT
GCATGCGAACAAAGGGGATTTTGTTTAATCATACCtggtaaataaaagtt
ttaattttttttatctaatatCGTCATTAATATACTTATTTTATTCTTAT
ATGACACGGATAACGTATTCCAAACGTATTTTGAAACTTAGTAGAAAATG
ATATCCATGTCATCAATCTTACATTAGTCGTTAATCTTGGAAGAAATATC
AAATAATGCTACCAGAAATTTCTCGTCCTTGTTGATCATTGTTATcgtta
accctattcgtactaggggggacTGTTTCGGTTTGGTGGAGAAACTCCTG
AgaaataatagaccttttgaCACGAAAGTTTTTGTAAATTCCTTACATTA
TTAAGcttcaagaaaaaataatttttgacacatgaatattttcacacctt
gagcttGAGAATATTtgtgacagtaaggtgtcataaaaattgatacaTTG
CCAgtacaaattaatttttcatgtcAAATATATCGATTGAACCGTAATTT
ATTATATTTAGGATAAAACGAGCATTTTGAACTAAAGGAACTGATAAAAC
TTTCGTTTTTtagctcactttgggcatgataagtgacttcatcaaaaaaa
tcttttgtcaaaaGTCATCTTacatgacaaggatcttgtgcgccaaattt
aatccaaaaagaccaactagatcaaaagttaggGGGTGGTACATGAAAAG
CTCCATAGTTTTGAACCGCCTCtaaaaagcctagtatgaatagggttaag
gtttGAAATTGCTAAAAATCATCCCACtctaattcttttcaatattc
Run BLAST on NCBI

transcript from alignment at sc0000449:102648..122410+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023251 ID=TCONS_00023251|Name=TCONS_00023251|organism=Clytia hemisphaerica|type=transcript|length=19763bp|location=Sequence derived from alignment at sc0000449:102648..122410+ (Clytia hemisphaerica)
TAAATGATGGAAAAGACAATGGCGTGATCAAGGTAGGTAACAAGGATTTA
AGTTTCAGGCGAAGATCACCCCTTTTAAATGTTACATTGAAAATTTCGTT
TTCCGGGAAGACTTCGACCAAAAAAGAATAAACGTTCGATTGTTTTTATG
GGGTCCACGATCAGCCACCTTAATAAATAGAAGAAGCAAGTATTCGGAAC
AGGAAATCCGGTTTGAGACGTTGATGTCTTAGACAACTCGACCGTCTCTC
CGGAGATAAATTgatagaaattaaaaaaaacccttCTATTTTCAGCACTG
ttcattcaaaaagaaatcTCCCTCTACTTACTTGAAAGTCTTCGTATCTT
CGAATATGAGAATAAACAACTGCAATGGCTGCTGTAAACGTTGGTTTGTC
ACTTTCGATGGACATGAATGTGCACCTGTGCCGATAGACGGTGTCGTTTA
TATGAGAGCAGGTGCTGGAGACCGACTTAAAGATCTACATCGTCCACGAG
TTATCGCTGGACATTGTAAGGTCTCGAAAAAAGAAGTCAATGTAGCTCTC
AATGTTGGAAATTGCCATGGCTACGGGAATGCGGACGCATACACTGGGTG
GAATTCAGCAACACGAATTTACATTGAAGAAGTTGACCCGCCACAATCTT
AAAAGgagttttttgttttataaatataaataaaagataaATACACATTC
TTAGGGGTTTATTATTAAAAACTCTTTCGTACTTTAAAACACACACCTTT
TGAAAGCTTCAGGGTAGCGTAGATAGTGAATGAGTCCTAGAAACAAGAGT
TTCTATCAAAATAGCTGAAAACCTATAATCTTTAAAAACAGTTTATTGAA
TTTATAACTGCTTTACTTTACTCCATGCGAACAAAGGGGATTTTGTTTAA
TCATACCtggtaaataaaaattttttattcttatATGACACGGATAACGT
ATTCCAAACGTATTTTGAAACTTAGTAGAAAATGATATCCATGTCAATAT
TACATTAGTCGTTAATCTTTGAAGAAATATCAAATAATGATACCAGAAAT
TTCTCGTCCTTGTTGATCATCGTTATcgttaaccctattcatactagggg
GGACTGTTTCGGTTTGGTGGAGAAACTCCTGAgaaataatagaccttttg
aCACGAAAGTTTTTGTAAATTCCTTACATTATTAAGcttcaagaaaaaat
aatttttgacacatgaatattttcacaccttgagcttGAGAATATTtgtg
acagtaaggtgtcataaaaattgatacaTTGCCagtacaaatttattttt
catgtcaaaTATATCGATTGAGCCGTAATTTATTATATTTAGGATAAAAC
GAGAATTTTGAACTCAAGGAACTGATAAAACTTTCGTTTTTTAGCTCACT
TTCGGCATGATAAGTGACttcaacaaaaaaatcttttgtcaaaaGTCATC
TTacatgacaaggatcttgtgcgccaaatttcatccaaaaagaccaacta
gatcaaaagttaggTGGTGGTACATGAAAAGCTCCATAGTTTTGAACCGC
CTCtaaaaagcctagtatgaatagggttaaggtttGAAATTGCTAAAAAT
CATCCCACtctaattcttttcaatattctTGCTAAAATAATGAACTGCTT
TTATCATACAAATTCTTATCAAAAATATGACCATAAAAAATCACGACTGA
CCCTGAATGGGAATTAGATCATAACCAAGATCTAAACAACTATATTTTAC
TTTATGTAACAAAGCCTTTTTGAAACGACTTTTTTCAAGCCATGATGATA
ATAgactaaaaatataaaaataataaccGTCCTGACGTCGTCCGAGATGA
ATCTTTACCAAGATAATTAAGTGTGGTTCACTCATTGTCACTTTTGAGAA
GTTGAAggtatttcaattttatgaaaaaatatttcttgtattttccaaag
gaaaatttatgtagagaaaatgtcattttttttccTTAAACAATTTGATG
TATTTTCAAGAACATTAGATAAAACACATTTCTTGTATTTGGCTAGAGAA
ACAACCTAAAGCaaacttttgttgttgttttttttcaaggaaaattgacC
AATACAAttccttgtattttccaaggaaaaaattACATAAAACAATTTAA
CTGTATCAAGAAAGTTatctgaagtatttttttgCTATCTTCACCAagct
gttttttcaaaaaaggtgaaGACGGTAGGTTCTTAAAAGCAAATCGAATC
GAAACTGCCACTTTCTTAAATCTACTGGTACGGAAAAAAGATCTTGCATT
GCTAAAATCTAACACAATCGAGAGCATCTTTTTTAAACTACTCTTATGCT
AGGAGTAGTTTAGTCATCGTGGCAAACCATCGTGGGTTGGCAATCGAGGG
TGATTTTGAAagactgaaaatttgaaaatcacatATTAaactataaaaaa
gaaaaagagaattagttttcaatttcaaagtgctcttgaaaatgttcaaa
aaaaaattagaaaaaggaaaaaaaaaacgttttcacTGCTTTTATattaa
aagctgaaaaattaccaattgaaagatcaatacagaaaaggcgcgaaaaa
gaattgccgtgtgtttaaaaatcgctagcggaAAGCTccatgcgagaatg
ggagagtaTTATAGTATAGATGGTACCTAAAGACGGTCAATTTTAAAAGT
AATAAGGAGAAATTTTGTTATCACATTCAAAAAAACTCTTACAAGCAACC
TCTCGTCACCACATAATGCTAATgagcccccccccagcggaccttcaatt
cacgcaatcacgcacaTCCCCCCCCCCGAATTCACGCATCTGCGCAATGT
TTTTTCGTAATTCATGCAAAGCTttcaaattcacgcattcacgcaatttg
ttcttaattttcaaGCCGTGGGTCGGACCATGTCAGTGCCCTCCCCCCGG
CTCTCTACAAAAGGGAAAAAAACGTAAATACATtcactttttgtagaaat
aaagTATTAAATGTAATAATATTTCATCTGTTACGTTATATTTCCTCTTT
CACATGAGGAATTTCAAACTGATAATATCAAAGGTTTAAACCTTTTAAGG
GATATAATGcagataaatttgaaaaaaaagaacatacTGGAATGGTGTGT
AAGATTTCAATTTAGTCACGTAAGTTGTTGGCTTTTGACAGACCGGTCCG
TATTTTACCCGAAATGCCCATTTTGAGCATAACCACTGGTACGATTTTGc
tgaaagttttttattatcaataccTAATATTTGTCAACATTTCAAGAAAC
AAGCATGCTGTTGTTGGTCCTATTCTCGGCATCTTCAAATCACGATAACG
TGATCACTTGATAGTTACGTAatcgacgaaaaaaaattcaagtaaATTGG
atgaagatttcaaaagttatcgaaaattaataattaaataattaaaaatt
ctGGTTTTCAGATCCCCCTTGTACGAAGAGTAGTAGAAAATCTTTTCAGG
CAGATTTATTAGAGGTTTTAATCTCGATTTCTTTGAGATGTTACCGAACC
TTCAGAcatctttgaaaagaaaacttttataaCTTATATATAAAACATTC
TTGAGCTTCCCATGACGAATGATCCTTTAAAGTTATTATATGTAGGCAGT
TTTTAATTCCTTAtttcatagtataagaaagccgcggctggaatgatgac
GCTAATGTTTTTGTCGTTaatggatgttctatctgtgtctcCGTGGTTTA
TAAGAGCTAAGTCGAAGGTAACAAAATCCTTAAACTTAAAAGTGTttata
atattcaattgaagaacaaCTACTTTTTAAGTCTCAAATTTTCCCACTAT
CCTCTCTTATTACcttatttgaagtatattttataaattccaaataaact
tttataaatttaggaccaaataacacacattttattaaaagaactttttt
ccaaatgttaaactttgaatgcttgctgtcacctcaatactgttgttttt
cgaatggaattttcacagaatgcagcttgaatatttatttactaatacca
gtgataatttttcagaataatcaGGAAGGCATTTCAAggcactcaatttt
cttcaaattcttaaagcactgacattctgacgttctgtacttttaaacca
agagtcttttcttttactttgatgttatgaatgcttgaattatcaagaga
tttgcgtttatgagcaaaattacgtctaacgaggtagtttgttaaaagtc
aaattaaattgacaatAGAAATTGTCACcaaaccataaaaaaattcgttc
ttacgacatagatagaacaacagaaattcagctgtactcattccagccgc
ggctttcttatactatgcttatttcaaagtttttcagaaTGAGAATGGTA
TTTAATGATTAAATGATTGATACATTTGATATAATAAATCTGATAATAAT
AAATTCATCAAGTTTGTAGGAAGTGTAATTTTTCGTGTCTAAAAGACTAG
GTGTCGTTGTAAAAAGAATTACTAGATAcacttttgtctttttaaataaa
gagaTTATCAAAATGGTTGCTATAAAATAAAACGTTCACTTGTTCCagct
taaaaacaaaacatcaaaatcgCTCAAGTCGGAGGCGGTTATAAGAAAAG
GATTCAAAACACCATTGAGAAAGAGAGCAAGAATTTGGACAACATGAAGA
CTGTTCATATTACCGTTCTTTCTTCTATTTGTGGCCGTGTTGGGTTGTAT
TCAAGCAACgaaaaatgtaaattaactaacATAATTCGGCCTTCTTACAC
CGATATAACGGATTATTTTAACTCCCTCCCCATTGGTAACCAAGCATTTT
GATGTATACTGATGGTACCAAATCATCGACCTCGTGAAAGAAAATGCGGA
CCCTTAAGATATGCAACCCCTTTGGAATGATATGTTGAATCTAGCAtcac
tttctttgtttcaaaGTGGTACATTTTTCGACACctacaaaggaaatttt
ttaaatcgagcGGATCAAGTGTTTCCGATGAGAAAGAAATCATCCAAGAC
TTCGGGACTCTTCCAAAGTACAGTCCCTTTTTCTTATAATAACAATGACG
ctcaaaaatacacaaaaacaaGAACCATTCAAGAACAATCGTGAGTCTAG
AAAGGCcgaattttaaataaaataagtTTTGTAGAAATAGGactttaaaa
gctttaaaaagaCAGAAAATACACTCGAAGTACGATTTGTTATGATTAGG
CACCATTCCACATCTGGAACTATTGTTCGCTTTATCTGCTGTGGGGTCAC
GTTCTATTATTAGCATATGAACTGTTAAACCAAAAGTGACGTTAATTCAC
CTTAACCTAGTGcgctctgttttttttttaaagttgaaatttttcttgat
ttttttaaaactgaaaACTTTAAAGTGCCATACAAGCTTGTAGCTTTTCT
TTAGAAGATGGTTTTGATACCATTGAAAAGCtatttttatactcttttta
aaagcattcggtttatgcccctttaaataaAAAGCTATGGCCTCAAGTCT
GAGACTCTTTTGGATGCATTATTATACGCGTCCGTCGTGGTCTAAGAGTT
AATAATAGAAAAGAGGAATAAAAGTCAGTAAACTCAAGTCTGAGACTCTT
TTGGATGCATTATTATAAGAGTTATCAATAGAAACTAGCCGGtgcccggc
gtcgcacgccggtttagctgtttgctgaacgcaagtcctttggatgttgg
gaaggtggcttaaacatgatgaaatcaaaattaaagagaaaaattatctt
caaagtttgactttatccctcccgggtgacgtatcttttaaccatatttt
gaaaaagatttttgtggcaaaaatgatcagaaagcagaAAAAGGGCGTCA
TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgtggagcaaga
agcaaaagtcatcttttaaaagaacaaaacattgcttgcgaaaacgaaag
tgacacacaaaaaacaaaccaacaaaaaacaaaccaacaacaaactgaca
tacagactacggctattaatatatagaagaGGAATAAAAGTCAGTAAACT
CAACGTCAAGTATGAGATTCCCTTCCCCAGATTATTTCGCTCGTCTCCTA
CAATTAAAACTAAAGCACGATGAGCAATAAATGTTATAGAAAAAGCTCGT
ACAAGATCCATTTTTTTTAACGCGGTCTTGTATTACGGTACAATATGACG
TAAagcatttatgtacgcgtttttagctaatcagattgctcatatttttc
atgttgatgataaACGTCAGTAAACTCAATGTCAAGTATGAGATTCTCTT
CCCAAGATTATTCCGCTTATCTCCTACAATTAAAACTAAAGCACAAGGAG
CAATCGCAGGTCGTCCGAAACATCCAGATTTGAAATAACATCGCtgttga
aaaagattttgaagtaAATGCAGGTGAATGAATCTAAAGTCTAAATTTTG
CCTTCCTTCTTACTCAGAAATACTTCAGCTTATTGTCTTCATATGGCACC
AAATTCAAAGAGGATGAttaggaaaacagcgagcggcagcgtcGTTACTT
ATCCTCTTTTCCTAAATCTCTGATAACGATTCACGCGAAATAATTTCTGC
CATCCAAACTTTCCGCCCTAAAAATATTATCAGTAAGCGTTCCCTGAAAA
ATAACTGTTTTCTACTGTGCTACTAATTAAGTAGAGATATGAAGACAGGA
GTAAATGTATGATATAAGAATGAGTCTTCTTTAGTACAGAACGGTTCTCA
ATTCTAACTTATACTTCccagtaatattttcaaaagaagttTCCGCAAAG
TTGTATGACTATGTTGATAAGGTTTAAAAATATTCTGCAGACTTACTCTA
AATCACTTCATAAATAACCTATAAGCTCATAAGGAAATTGGATGTAGGAG
TTCTTCAAGACAAATTTTGCAGTAAACTGTTAAAACGGTACCATTATGTG
ATCGTAAACAGGATTATTTATAACGACTCTTTAAAAGACCTCTTTTAAAA
CAACTAACAAAATTGTTAGGAAATGAAGCAACGGATTAAGGATTTTAGGC
CAATTTTAAAGCATTTGTTGAAGACGTCACTAGAATGACTATGgtatatt
ctttttatttagaTATACCACTCCCTTTACTCAAATACATCTTTTGAGTT
TAGCGCCGGCTCTTTTTCTAGACAAGCTAACCTTATAAATAGGGGGGTTC
TAGCTGTTTGCTCAATCATCAACAATCAAAGAGATCAACCACAAGAACAC
TGACGGACTAGAAGAAAGTAGGGACAAAAACACATTGTCGAACGTAttca
agaaagtttttcaagatTAACATTCGATATGAACAAGCTTTTATGTATTC
CAGTTCTTTTGACAATGATGTTTGTCTTTGTATCGACTGCTAACAATCAG
GTGGGTAATCagtgtttataattttttcattaaaaacaaactaactaatc
ggggaaaaaatgtcagagtttatttagtcggggttctttttcgtcgggaa
aaaaattcttcacctagaggcattttcgtcactttcccacgatatttttt
ccccgatgaggtatataagaacattatacATCGATgaccgaaaaattaag
aacaagttaggagTATTTTAAGGGTTTGCGGACGTAAGAAgtcgtattgt
ataagggttgcgaagcgatggTGAATAAAAGAACAGTTTAAGAACCTttt
tagttcaaaagttatggacgTGTAAAATTGACCTTAAAAAGCATTAAATT
GCTCCCCGAAATTGTCTTAAAACGGCTCGTGTGGATCAATTGGGCAcagt
tttcagaaaaatgtgAATATTTCGTTGAAATAAGATTTTCAACCCCTAAA
TTGAAATATAGGCCTAAAAGGtctaaaaataccatttttcataaattttg
ccTTAAGTGCAAATCAGTGCCCCTAACTATAAAAAAGGACAGAAAACGAT
aggctaaattttcaaaaaaacatcaatCTTGAATTTTCGACCCAGAAGGG
ACTGTTGACCCCTACAATACTGAAAGATTCTTGGTGATTTACGTGATGAA
TTTTTTAGCTTTGTAGCTTTCCAAAAGCTTTGAAAGATAACTATGTCGCA
TCAAAGGTTTACAAACCCTAGAGGTTTTTCAGTCATTCctaattttaaaa
atgattttttttatataaggaatgCAAAGATGGGCGTGACGGTCGGGATG
GAAAAGATGGAAAGGACGGCAGAGACGGCAAAGACGGAGTCTGTTTATAT
CGAAAAGGCATATTCGTAATAAAgggagaaaaaggaaaagatggCAGAGA
TGGAAAGGATGGAAAAGACGGTGTGACAAAAAACTGGAAAGAATGCGCTT
GGAACAAAATTAACGAATACAAAGATAGTGGTGTTATAAAGGTAGGCTAT
AAAATAGGCGCATTGTTACAATTGCTGTCAGTAGGAAAAGCTCTGCTTTC
AGTTCTGTCATCAAATATGTCTAACATAAAACACTAGATCAAGCCATTCT
GTCCATTGATTGAACAAATTTCTGGTCTACTGTTGTCCACTTTTCGAaaa
gattgttttgttttaactGCAGCAGGCTTGGAAAAAACGGattagctcta
tctagtgtttatTATTACGCATAGCATACACAACTGTGTTTTTTATGTTC
ACCTAGTGTTTATTATTAGATATTTTTGGTCCTACCTAGCAAACATACCC
CGAAAATGGTATGGTATTGGTCCATGATGCATATCATAAAGAAAATTAGA
ACCTTTTATAATAATACGATTCTtcataatttcagaaaaatctttACAAT
CACGAATAATAAATACTCCTCCACCACTCATTAATGGTTGGATTGTTTTG
CAAACCCCCCGCCTTTATCAAGTTAAAAATACTTTCGgctgtcaaaagaa
aagtacCATATGTTTCTCTAAATAGCCAGATTTTAGTCTATAATTATACC
TTACCAACCCCCTTGTTAATCAGACATCTGAGAGTACAGTTTATTAGGTC
AGAACCACGAATATATAAGAATCTGGTTGATTTCGAAGATCAGCCTTTAC
AAAGAATAGTTCCCATTATATAAAccaaattgaataaaaatgaaataatc
gGTATCATTAACCATTTCTattattgattgaaaaaaaccCGACCTTTCTT
TTTTTTAGTCTTGCGATTTCAAAAAGGAATCTCGCTCTACTCACTTGAAA
GTCTTCGTATCTTCGGTTATGAGAATACACAATTGCAATAAGTGCTGTAA
AAGATGGTTTGTCACATTCGATGGACAGGAATGTGCACCTGTGCCGATAG
ACGGTATCGTTTATATGCATGCAGGTGCTGGAAACCGTATGAAAAATCTA
CATCGAACACGAGTTATCGCTGGACATTGTAaggtttcgaaaaaaaatca
aatcaatgtgGCCCTTAATGTTGGTGATTGTACTGGGTATCCCGGGGGCG
ACGCATCCACTGGGTGGAATTCAGCAACACGAATTTACATTGAAGAAGTT
GACCAGCCACAATCTTAAAAcaagttttttgtttgaaaaatataaataaa
agataaacacatatttttaggaGTATATTATTAAAAACTCTTTCCTACTT
TAAAAAGATATACCTTTTGAAAGCTTCAGGGTAGCGAAGATAGTGGATGA
GTCCCAGAAACAAGAATTTCTATCAAAAACCTATAATCTTTAAAAATAGT
TTATTGAATTTATAACTGCTTTGCTTTACTCTATGCGAACAAAGGGAATT
TTGTTTAAACTTACTtggtaaataaaagttttaattttttttatctaata
tCGTCATTAACATTCTTATTATAATCTTATTTTATTCTTATATGACACGG
ATAAGGTATTGCAAACGTATTTTGAAACTTAGTAGAAAATTGTATCAATG
TCAACAATCTTACATTTGTCGTTAATTATGAAAGAAATATCAAATAATGG
TACCAGACAGTTCTCGTCCTTGTTGATCATCGTTATcgttaaccctattc
atactaggggGGACTGTTTCGGTTTGGTGGAGAAGATAATAGTGCTAATA
ACTCCTGAgaaataatagaccttttgaCACGAAAGTTTTTGTAAATTCCT
TACATTATTAAGcttcaagaaaaaataatttttgacacatgaatattttc
acaccttgagcttGAGAATATTTTTGACAGTAAGGTGTCGTAAAAATTGA
TACATTGGCagtacaaatttatttttcatgtcaaatatatcgtttgaACC
GTAATTTATTATATCTAGGATAAAACGAGCATTTTGAACTCAAGGAACTG
ATAAAACTTTCGTTTTTtagctcactttgggcatgataaGTGACtccatc
aaaaaaatattttgtcaaaagtcaTCTTacatgacaaggatcttgtgcgc
caaatttaatccaaaaagaccaactagatcaaaagttaggGGGTGGTACA
TGAAAAGCTCCATAGTTTTGAACCGCCTCtaaaaagcctagtatgaatag
ggttaaggtttGAAATTGCTAAAAATCATCCCACTCTTATTCTTTTCAAT
ATTCTTGCTAAAATAATAAACTGCTTTTATCATACAAATTCTTATTGAAA
ATATGACCAAAAAAAATCACGACTGACCCTGATTGGGAATTAGATCATAA
CAAAGATCTAAACAACTATttcaaattcacgcattcacgcaattctttct
taattttcaagccgtgggtcggaccatatCAGTGCCCTCCCCCCGGGTCT
CTACAAAAGGGAAAAAAACGTAAatacatttaaggctcaaaaggccgatt
tcttaagacacattgaggctgcttggtataactaaagtctgtccagatat
aattggcagtggaaacaagaatgcctgtaacttttaataGCCAAAtataa
tttcgaaaattttttttgcttgttttagagaatcaaaagcgctatatttg
aatatatttttggttgaaaaattcgcgatttttagcggttaaatttgcga
ttgcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNgtgctaccaaggggtatttcgagtcccatatcttccgaagg
acttttctgtttgccttgaaatttgacaaccttcttTACCTAAGGCTGAT
TTACCACtgatgtaaaaatgaacgttatagcataagtagaaaaaaagcac
aatttttacaatcgtaaatttaaccgctaaaaatcgcgaatttttcaacc
aaaaatacattcaaatataacgcttttgattctctggaacaagcaaaaaa
aaattccataattatatttgactatcaaaagttacaggcattcttgtttc
cactgccaattatatctggacagactttagtttcttaaaaaaaaaaaaaa
cgtgtagctaaAAAGACCGTAAATGCATTCGCTTTTTGTAGAAATGCAGA
GTGCTTTCTGAGGGAAACATAAAAGCGGtaaatataataatatttcatCT
GTTACGTTATATTTCCTCTTTCGCATGAGGAATTTCAAACTGATAATATC
AAAGGTTTAAACCTTTTAAGGGATGTAATGCagttaaattagaaaaaaaa
agaaaataataataatcttttTTATCAATCGAAAGCAAAAGATAATCTTT
CAGCATTCCTTGAACTGATAAAAAAGATACTGCACGCACAGAAagtcaat
tgaaaaaaaaatgtttttgtcagATCTAAATTTAGCATTATATAGTCAGA
CAGTTTTAATTCTTTTGACCTGTAATTCTGCGCTGAAAAAGCCTTTCTTG
TCTGatatttctaaaattgagaTGTTCGAATCGATTTTTTCCATTTACTA
CTCGAGGACCGTCCTTTTTTTCGGCCACCagtctggttggtattttaaTA
GAGACCAGAATAAAAAGTTGATTGAAATCATATATTGACTGTTTGGCTCT
TCCAATTTGATTGATATTTGTTCCTGAGGGCTGATTTGTCAAATGAAAGA
GACCAGTAGGAGAAAACATTTGGTCCTATgagtatttggtactttgcagg
tccgtctgtaaaatacacgttgacCATCTGCCAGAAATCAGAGGAATTTA
GTAGCTtttcacttgaaattttcacaagctTCAGATATTGACCATCTCAG
ATAGTGTGTAAGATTTCAATTTAGTCATGTAAGTGGTTGGCtttttacag
accggtccatATTTTACCCGAAATACCCACTTTGAGCATAACCACTGCCC
ACTTTGAGCATAACCACTGGTACGATTTTGCTGAAAGTTCTTTATCATCA
ATACCTCAGTGTAACCTCTAATTAaaggacaccatcggggaaaggcgtta
gtgtccgctaattggaagtgtccgccttttagaaacttttgatctcgggg
CTCCAATTTTAAAACTAGGCCATctcagggtgtcgaaaatacaaaattag
gGACTAAAGTACTTATCTTCAAACACTAGGCTatagaagaacaagagaaa
ggttattaaaaagcaacaatttagtttttaacaaataaaagaaaatcagc
gatttatgatttttttggcccacctaaattcgttgaatgggtcaagggaa
aactggaaatttgtagaaataatttgaatattaagactaataagtgcttg
aaataaaaatatctaaaaatttttttttcgattttggacgtctgtgaccc
gtttgatattcaatgtccgctaattggagagctaaaatagggatTTTTGC
CATTTCatgcgaaaaaatttgtcctctaatcagagggtcctaattgagtg
tccgccttttagaaacttgtttatgaggatttgactaggaaacggccggg
gaaattaaaattgtccgctaatcagaggtgtccgccttctagagtgtccg
ttaattagaggttttatttcaagtaaattggaggaagatttcaaaagtta
tcgaAAATTCTGGTTTTGAGAGACCCCTTAAGATGTACGAAgagttaaca
aaaaaaaaacaatagggTATCTTTAAGATACTCTATAGTAGAAAATCTTT
TCAGGCAGATTTATTAGAGGTTTTAATCTCGGTTTTTATGAGATCTTACC
AAACCTTCAGAcatctttgaaaagaaaacttataTATAAAACATTCTTGA
GCTTCCCACGACAAATGATCCTTTAAAATTATTATATGTAGGCGTATGTA
GGCAGTTTATATTTCCttatatttcaaagtttttcaaaatcagaatgATA
TTTAATGATAAGATGATTGATACATTTGATATAATAAATCTGATTATTCA
TaataaattgatcaaatttttaGGAAGTGTAATTTTTCGTGTCTAAAAGA
CTAGGTGTCGTTGTAAAAAGAATTATTAGATAcacttttgtctttttaaa
tAAAGCGATTACCAAAATGGTTGCTATAAAAGAAAATGTTCGCTTGTTCC
AGCttaaacaaaacatcaaaatcgCTCAAGTCGGAAGAGGTTATAAGAAA
AGGATTTAAAACACCGTTCAGAAAGAGAGCGAGAATTTGGACAACATGAA
GACTGTATTACCGCTCTTTCTTCTATTTGTGACCGTGTTTGGTTGTACAC
AAGAAACGAAAAATGTAAGTTAATAACATAATTGGGCTTTTTTACACCGG
TGTAGCGGATTATATTAACTCCTTGTAAAAGATAATTCCCCCAGTCATAA
TAAACTAGTAAAAAACACTCCTTTAGAGTGGAAATTTCTAAGGAAATTAA
TACTTccttagtaaataatgacttcctttttctaaagaagtagcgagtta
aaaaaactagtTGGATAAGACTCCCCGCCTCGAATGTCAAgcaaaagaag
tcattgtattaCATCGCATCAACCCTAACTAACCCTAACACACTGATTTT
TCTGGTATAGGCAGTATCAAACAGACAGGCATTCTTAGATTCTAACTCGA
CCAATGAAATTAGGGAAAGTCTAAATTTGCTAGGAAATGTTAACTCTAGG
GAGTCAAAATTTACTAGCATTGAAAAATGTTTCGTTGGGCTAACAGCTTA
ATGGCAAACAAAATAACCagaagcatttttgttttttcattaaaaactac
tAAAGTTAACTAATATTAGGAGTTATAGAGNGCGTGGCCAAAccccaaaa
agggcaaaaaggaTTGAGTAACTCTAAAAAACTTTGGAACTATATTTTTG
CCCTAAAGTTTTGCATACCCACCCTCAGTTATCTATCTTGACGAATCCTG
AGAATATTTCCAAAAGTAAATTCGTTATTTCGTAAATAATTATTTCGATG
TCCgtaaaaaaaggggaaatataGACGGGCGAGGGCTCATTCATAAATCG
TGTAATTCAATTGAAATTCCCTCTAGAAATTGGTATTCTTGATCCAAGAA
CAGTTTGAAGCCTTTCAGAGTCGAAATTCatgtaaaagtttcaattttcc
gCTTTCAGATCCCTTTTCACGTCTTCTGAACTTCACTGAGGTAGTGCTAA
ATTAAGGAAAGTGTTTTTATCACATAGAGCAAAATTGTCGGCAGTTCAAC
GAGAATTTACATTATTTCAGATATAAAAGAAGTGCTTACAATTCACAGAC
ATACATTTTGATGGATTTTCTGTTGTTCAAGATCATATAAATAAATGGTT
GTCAAGTTTTCATATATTTAGGACGAAAAGTCACTCCCTCTAGGtaggaa
aaacaaaatttttaagatttcaaaatttacacGGACAAATCTTCACCTGA
AGAGATAATGTGCCAAATTTAAGCAGGAAAGAATGTCTGTCGCCTTTATA
GTCAAGCCTTCCTCCTTTTGCCTGCGTAAAGCCTTTGGGCTACGCCAAAA
TTgtctaaaattatatttctcgaataaatgttttgatataCTTTATTTCT
GTCCCTGAGAAGTGAATGTGCCAAATTTGCGCGGAATTCAATCACTGTGT
GTCTCATTTCCAACATAATTTGGGTAGTTGGGTAGATggaaaaatattga
tttgaGGGCACAAACTTTAGTCTACAAAAAGGCTTCCCACATtttgtttc
ttcatttttgttcaaaaattctaTTTGACCTGTCTACACTTATAATTTAG
AcctcaaaaaaaattagtttgacactttttgaaaaatcacccACTCCTAC
GTAGTATATAAGAAATGGGAAATCATAATAAACTAGTGTATTTTAACTGG
GGAGTCATAATGAACTAGTTTATTATAACTGGACGGAGTTATGATTTAGG
GCAGTTAAGTTTAACTGCGAAACCGGCTCTAAGTTAACGCAGAACTTCTA
CTTCGACCCATAATCCGCAATTGTCGAGTTTTTAGCTGACGCAAATGAGA
ATTTAAAGGACGCAAAGATTATTGGCCGGCTTTAATTCTCCCACAGGTCA
AAGAACGCCAATAACGACCAGCGTAAAATGCCTAATAAAGTATTTCCAAT
TTTAGTCGGTCTAAATTCTTTCTGGTTGTCATTAGTGTTTCTGGTAGTGC
CACGCAGTCTACAAAACACAGTAATGAGAAAGTTCTTCTAAAAATTGTTT
AATCTCAAAAGCATCTTTTTCTTTAACACAACAGGATTGTTGTAATTGTT
GTAAAGATGGACGTGTGACGGACGGGATGGAAAGGATGGAATCGGAAAGG
ATGGAATCGGAAAAGACGGAATTGGAATTAACGGAAAAGATGGAAGAGAT
GGTCGAAACGGGGTAGACGGAAAAAACGGAATGAATGGAAAACCGGGAAA
AGACGGATTAAATGGAAAAGATGGAAAAGACGGAAAAGATGGAGAACCCG
GCGAAGACGGGAAAAATGGAATCGATGGAAAAGATGGCTTTAAGGGGACC
AATGGAAAAGACGGAAAGAATGGAGAACCCGGTAAGGACGGAAAGGATGG
ATTAGATGGAAAAGACGGAAAAGACGGAAAAGACGGAAAAGATGGAAAAC
ACGGAACGAACGAATTGTCGAAGAAAAACTGGAAAGAATGCGCTTGGAAA
AATGTATATGATGGAAAAGACAATGGGGTGATAAAGGTAGGTAACAAGGA
TTTAAGTTTCAGGCGAAGATCACCCCTTTTAAATGTCACATTGAAAATTT
CGTTTTCCGGGAAGACTTCGACCAAAAAAGAATAAACGTTCGATTGTTTT
TATGGGGTCCACGGTCAGCCGCCTTAATAAATAGAAGAAGCAAGTATTCG
GAACAGGAAATCCGGTTTGAGACGTTGATGTCTTAGAAAACTCGACCGTT
TCTCTGgagataaaatgatagaaattaaaaaaacccTTCTATTTTCAGCA
CTGTTCATTCAAAAAGAGCTCAATCAATTCATACTTGAAAGTCTTCGTAT
CTTCGAATATGAGAATATACAACTGTAATCGTTGTTGCAAACGTTGGTTT
GTCACTTTCGATGGACATGAATGTGCACCTGTGCCGATAGACGTTGTCGT
TTATATGAATGCAGGTGCTGGAAACCGACTTAAAGATCTACATCGACCAC
GAGTTATCGCTGGACATTGTAAGAtctcgaaaaaaaaagaagtcgaTGTA
GCTCTCAATGTTGGTAATTGTCAAGGCTACGGGAATGCAGACGCACACAC
TGGGTGGAAGTCATCAACACGAATTTACATTGAAGAAGTTGACCAGCCAC
AATCTTAAAACAAGTTTTTTCTTGTGAAAAATATAAACTAAAGATAAACA
CACATTCTTAGGGGTATATTATTAAAAACTCTTTCCTACTTTAAAAGATA
TACCTTTTGAAAGCTTCAGGGTAGCGTAGAAAGTGAATGAGTCCTAGAAA
CAAGAGTTTCTATCAAAATAGCTGAAAACCTATAATCTTTAAACACAGTT
TATTGAATTTATAACTGCATGCGAACAAAGGGGATTTTGTTTAATCATAC
CtggtaaataaaagttttaattttttttatctaatatCGTCATTAATATA
CTTATTTTATTCTTATATGACACGGATAACGTATTCCAAACGTATTTTGA
AACTTAGTAGAAAATGATATCCATGTCATCAATCTTACATTAGTCGTTAA
TCTTGGAAGAAATATCAAATAATGCTACCAGAAATTTCTCGTCCTTGTTG
ATCATTGTTATcgttaaccctattcgtactaggggggacTGTTTCGGTTT
GGTGGAGAAACTCCTGAgaaataatagaccttttgaCACGAAAGTTTTTG
TAAATTCCTTACATTATTAAGcttcaagaaaaaataatttttgacacatg
aatattttcacaccttgagcttGAGAATATTtgtgacagtaaggtgtcat
aaaaattgatacaTTGCCAgtacaaattaatttttcatgtcAAATATATC
GATTGAACCGTAATTTATTATATTTAGGATAAAACGAGCATTTTGAACTA
AAGGAACTGATAAAACTTTCGTTTTTtagctcactttgggcatgataagt
gacttcatcaaaaaaatcttttgtcaaaaGTCATCTTacatgacaaggat
cttgtgcgccaaatttaatccaaaaagaccaactagatcaaaagttaggG
GGTGGTACATGAAAAGCTCCATAGTTTTGAACCGCCTCtaaaaagcctag
tatgaatagggttaaggtttGAAATTGCTAAAAATCATCCCACtctaatt
cttttcaatattc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013076XLOC_013076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023251-exon-sc0000449-1491911889:102648..102679TCONS_00023251-exon-sc0000449-1491911889:102648..102679Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1510915933:102648..102679TCONS_00023251-exon-sc0000449-1510915933:102648..102679Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1575043694:102648..102679TCONS_00023251-exon-sc0000449-1575043694:102648..102679Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1491911889:102943..103108TCONS_00023251-exon-sc0000449-1491911889:102943..103108Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1510915933:102943..103108TCONS_00023251-exon-sc0000449-1510915933:102943..103108Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1575043694:102943..103108TCONS_00023251-exon-sc0000449-1575043694:102943..103108Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1491911889:121212..122410TCONS_00023251-exon-sc0000449-1491911889:121212..122410Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1510915933:121212..122410TCONS_00023251-exon-sc0000449-1510915933:121212..122410Clytia hemisphaericaexon
TCONS_00023251-exon-sc0000449-1575043694:121212..122410TCONS_00023251-exon-sc0000449-1575043694:121212..122410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000449supercontigsc0000449:102648..122410 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0308654	0	0	0.241635	0	0.0383941	0	0	0.0311713	0	0	4.80783	5.12146	0	0	0.156928	0.0558713	9.89752	9.36988	0.442872	0.489514	5.08087	7.01884	21.516	11.2682	1.83462	1.06921	0	0.0675412
Blast
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BLAST of TCONS_00023251 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.397e-24
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 3 
Query:    3 NDGKDNGVIKHCSFKKKSPSTYLKVFVSSNMRINNCNGCCKRWFVTFDGHECA-PVPIDGVVYMRAGAG--NRLKDLHRPRVIAGHCKISKKKEVDVALNVGNCQGYGNADAHTGWKSSTRIYIEEVDQ 380
            N G D G I  C+F K   ++ L+V  S ++R+   N CC+RW+ TF+G EC+ P+PI+ ++Y+  G+   N   ++HR   + G C+      VDVA+ VG C  Y   DA TGW S +RI IEE+ +
Sbjct:  115 NYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00023251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR12.397e-2439.53Collagen triple helix repeat-containing protein 1 ... [more]
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