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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023248 ID=TCONS_00023248|Name=TCONS_00023248|organism=Clytia hemisphaerica|type=transcript|length=1040bp
ttttcaggtCAAGAAATTCAATATTAGGGATGATGTAGATTTCAACATTA
CTAAAGACAAAAACGATACATCGACTTACGGAATTGAAGCTGCTTTTGTT
GAGATGGCTGGTCAACTGACAAATAATGGTGGGAATATCACTCTTCAAGT
TTTCATGTTCAAAGATGCTGGTAATGTCACTGGTGAAGATGGCAACGAAT
ATGAGCTTGTTGATGGTGGTGTTAAATTCAACCTTAAAATcgacCTCCCA
GAGACAGTAAAGGCCTTGGATGTTGTGCTTGCCACAAAGTGCGGCTTCAA
AGGGGAAGGCTCCAAGAAAGGAAAACCccaaaaacaatcgaaagaggCAA
CTCGTGGTAAAAAAGGACCTGTCAAAAATTCTGGAAGACGAGATTTGGAA
ACTTTTGAAATGTGTAGTAATGCTCAGATGACCTTCTCAGCAGCCTACCA
GGCTGGTGGTAATGATATTGACATGCCCTCTGGATACCCTGAATCAAACG
CCGTCGATGAACAGAACGAAAAGCTAGGCTCTGAAATCGTACTACGTTTC
GAAAACGCCAAAAACATCTTTTACGATCCCACCGCTGAAACAGGGGACGA
CATTGGAGATCCGGTCGATTATGATACTGGAAGCTCCGGAACTATGATGA
CATCaagtgttttgattttgtcTTGTTTGATGATGCTTGTTAAAATGTTG
ATGtaaatttcctttgaaaatcgaatggGGTCTAAGATAAGTTAGCAGAG
TTGATAACAGCTCCCCATCGAAGACAATGGAAGACTAAACGTCAACGGGg
aaaaacaaatcaataacAATTGACCATATAgaatcattttttatttttct
tgatttttctttattttcactttagTAGAAGAATATGTAACGAGTTAATT
GGACATGGAGTTCTTTTAGGTTTAATAACGATTATTAACAAATTTTTTGC
ACTTCCGAATTTTTATTTACCGTACTTAATAAtaccttttttggtaatca
tTATTTTGTAAGTTATTTATCAATAAAATACACATAACCA Run BLAST on NCBI protein sequence of TCONS_00023248-protein >TCONS_00023248-protein ID=TCONS_00023248-protein|Name=TCONS_00023248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
FQVKKFNIRDDVDFNITKDKNDTSTYGIEAAFVEMAGQLTNNGGNITLQV
FMFKDAGNVTGEDGNEYELVDGGVKFNLKIDLPETVKALDVVLATKCGFK
GEGSKKGKPQKQSKEATRGKKGPVKNSGRRDLETFEMCSNAQMTFSAAYQ
AGGNDIDMPSGYPESNAVDEQNEKLGSEIVLRFENAKNIFYDPTAETGDD
IGDPVDYDTGSSGTMMTSSVLILSCLMMLVKMLM Run BLAST on NCBI transcript from alignment at sc0000449:12900..14666+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023248 ID=TCONS_00023248|Name=TCONS_00023248|organism=Clytia hemisphaerica|type=transcript|length=1767bp|location=Sequence derived from alignment at sc0000449:12900..14666+ (Clytia hemisphaerica)
ttttcaggtCAAGAAATTCAATATTAGGGATGATGTAGATTTCAACATTA
CTAAAGACAAAAACGATACATCGACTTACGGAATTGAAGCTGCTTTTGTT
GAGATGGCTGGTCAACTGACAAATAATGGTGGGAATATCACTCTTCAAGT
TTTCATGTTCAAAGATGCTGGTAATGTCACTGGTGAAGATGGCAACGAAT
ATGAGCTTGTTGATGGTGGTGTTAAATTCAACCTTAAAATGTAAGATCTT
ctgaaaagtctttttttagTTAAATATCTATCAATTAAGAACTAAGTACC
TAacacttaaaggttttattttacataagtattcccgtttcatatcaaac
aCATATCTCGTATCAGGACATTGTcttccctattgttatattgtgctgat
ataagcaaaaaaaatttatcttttccttctttctgaccaatcttgctcca
catatgtgtcaattcaatgtgaaaaagcttgtaaattaaaattgatgggt
aagcaaacgatatcactcttatttaagaacaaaacctttaatttcttgta
tatttttttagtaaaaagaCTATTACttgattcttcttcttcttcttgat
TCTCTGATTCttgattcttatttttttagcgacCTCCCAGAGACAGTAAA
GGCCTTGGATGTTGTGCTTGCCACAAAGTGCGGCTTCAAAGGGGAAGGCT
CCAAGAAAGGAAAACCccaaaaacaatcgaaagaggCAACTCGTGGTAAA
AAAGGACCTGTCAAAAATTCTGGAAGACGAGATTTGGAAACTTTTGAAAT
GTGTAGTAATGCTCAGATGACCTTCTCAGCAGCCGTAAGTCATGTTTTCC
TTTATTTCTAGCTTtaaatattgaatgaaaatatcaacttaaaggttttg
tttttacataattgttcccgtttcatatcaaacacatatttcatattctA
TTGTTATCATTATGCTAATATAAgcaacaatttttttatttttccttttt
gctgaccaatcttgctccacatccgtgtcaatcgaatgtgaaaaagcttg
taaattaacattaatgagtaagcaaacgatcttatttaaaaacataacCT
TTAAACACCTTTCTCTGTGTCTAATCTCTGAAATAAATAGTAataaaaaa
tccatttttttcaTCTCAAAAGTACCAGGCTGGTGGTAATGATATTGACA
TGCCCTCTGGATACCCTGAATCAAACGCCGTCGATGAACAGAACGAAAAG
CTAGGCTCTGAAATCGTACTACGTTTCGAAAACGCCAAAAACATCTTTTA
CGATCCCACCGCTGAAACAGGGGACGACATTGGAGATCCGGTCGATTATG
ATACTGGAAGCTCCGGAACTATGATGACATCaagtgttttgattttgtcT
TGTTTGATGATGCTTGTTAAAATGTTGATGtaaatttcctttgaaaatcg
aatggGGTCTAAGATAAGTTAGCAGAGTTGATAACAGCTCCCCATCGAAG
ACAATGGAAGACTAAACGTCAACGGGgaaaaacaaatcaataacAATTGA
CCATATAgaatcattttttatttttcttgatttttctttattttcacttt
agTAGAAGAATATGTAACGAGTTAATTGGACATGGAGTTCTTTTAGGTTT
AATAACGATTATTAACAAATTTTTTGCACTTCCGAATTTTTATTTACCGT
ACTTAATAAtaccttttttggtaatcatTATTTTGTAAGTTATTTATCAA
TAAAATACACATAACCA Coding sequence (CDS) from alignment at sc0000449:12900..14666+ >TCONS_00023248 ID=TCONS_00023248|Name=TCONS_00023248|organism=Clytia hemisphaerica|type=CDS|length=2115bp|location=Sequence derived from alignment at sc0000449:12900..14666+ (Clytia hemisphaerica)
tttcaggtCAAGAAATTCAATATTAGGGATGATGTAGATTTCAACATTAC
TAAAGACAAAAACGATACATCGACTTACGGAATTGAAGCTGCTTTTGTTG
AGATGGCTGGTCAACTGACAAATAATGGTGGGAATATCACTCTTCAAGTT
TTCATGTTCAAAGATGCTGGTAATGTCACTGGTGAAGATGGCAACGAATA
TGAGCTTGTTGATGGTGGTGTTAAATTCAACCTTAAAATcgacCTCCCAG
AGACAGTAAAGGCCTTGGATGTTGTGCTTGCCACAAAGTGCGGCTTCAAA
GGGGAAGGCTCCAAGAAAGGAAAACCccaaaaacaatcgaaagaggCAAC
TCGTGGTAAAAAAGGACCTGTCAAAAATTCTGGAAGACGAGATTTGGAAA
CTTTTGAAATGTGTAGTAATGCTCAGATGACCTTCTCAGCAGCCTACCAG
GCTGGTGGTAATGATATTGACATGCCCTCTGGATACCCTGAATCAAACGC
CGTCGATGAACAGAACGAAAAGCTAGGCTCTGAAATCGTACTACGTTTCG
AAAACGCCAAAAACATCTTTTACGATCCCACCGCTGAAACAGGGGACGAC
ATTGGAGATCCGGTCGATTATGATACTGGAAGCTCCGGAACTATGATGAC
ATCaagtgttttgattttgtcTTGTTTGATGATGCTTGTTAAAATGTTGA
TGtaatttcaggtCAAGAAATTCAATATTAGGGATGATGTAGATTTCAAC
ATTACTAAAGACAAAAACGATACATCGACTTACGGAATTGAAGCTGCTTT
TGTTGAGATGGCTGGTCAACTGACAAATAATGGTGGGAATATCACTCTTC
AAGTTTTCATGTTCAAAGATGCTGGTAATGTCACTGGTGAAGATGGCAAC
GAATATGAGCTTGTTGATGGTGGTGTTAAATTCAACCTTAAAATcgacCT
CCCAGAGACAGTAAAGGCCTTGGATGTTGTGCTTGCCACAAAGTGCGGCT
TCAAAGGGGAAGGCTCCAAGAAAGGAAAACCccaaaaacaatcgaaagag
gCAACTCGTGGTAAAAAAGGACCTGTCAAAAATTCTGGAAGACGAGATTT
GGAAACTTTTGAAATGTGTAGTAATGCTCAGATGACCTTCTCAGCAGCCT
ACCAGGCTGGTGGTAATGATATTGACATGCCCTCTGGATACCCTGAATCA
AACGCCGTCGATGAACAGAACGAAAAGCTAGGCTCTGAAATCGTACTACG
TTTCGAAAACGCCAAAAACATCTTTTACGATCCCACCGCTGAAACAGGGG
ACGACATTGGAGATCCGGTCGATTATGATACTGGAAGCTCCGGAACTATG
ATGACATCaagtgttttgattttgtcTTGTTTGATGATGCTTGTTAAAAT
GTTGATGtaatttcaggtCAAGAAATTCAATATTAGGGATGATGTAGATT
TCAACATTACTAAAGACAAAAACGATACATCGACTTACGGAATTGAAGCT
GCTTTTGTTGAGATGGCTGGTCAACTGACAAATAATGGTGGGAATATCAC
TCTTCAAGTTTTCATGTTCAAAGATGCTGGTAATGTCACTGGTGAAGATG
GCAACGAATATGAGCTTGTTGATGGTGGTGTTAAATTCAACCTTAAAATc
gacCTCCCAGAGACAGTAAAGGCCTTGGATGTTGTGCTTGCCACAAAGTG
CGGCTTCAAAGGGGAAGGCTCCAAGAAAGGAAAACCccaaaaacaatcga
aagaggCAACTCGTGGTAAAAAAGGACCTGTCAAAAATTCTGGAAGACGA
GATTTGGAAACTTTTGAAATGTGTAGTAATGCTCAGATGACCTTCTCAGC
AGCCTACCAGGCTGGTGGTAATGATATTGACATGCCCTCTGGATACCCTG
AATCAAACGCCGTCGATGAACAGAACGAAAAGCTAGGCTCTGAAATCGTA
CTACGTTTCGAAAACGCCAAAAACATCTTTTACGATCCCACCGCTGAAAC
AGGGGACGACATTGGAGATCCGGTCGATTATGATACTGGAAGCTCCGGAA
CTATGATGACATCaagtgttttgattttgtcTTGTTTGATGATGCTTGTT
AAAATGTTGATGtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023248-exon-sc0000449-1491911889:12900..13139 | TCONS_00023248-exon-sc0000449-1491911889:12900..13139 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1510915933:12900..13139 | TCONS_00023248-exon-sc0000449-1510915933:12900..13139 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1575043694:12900..13139 | TCONS_00023248-exon-sc0000449-1575043694:12900..13139 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1491911889:13529..13733 | TCONS_00023248-exon-sc0000449-1491911889:13529..13733 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1510915933:13529..13733 | TCONS_00023248-exon-sc0000449-1510915933:13529..13733 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1575043694:13529..13733 | TCONS_00023248-exon-sc0000449-1575043694:13529..13733 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1491911889:14072..14666 | TCONS_00023248-exon-sc0000449-1491911889:14072..14666 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1510915933:14072..14666 | TCONS_00023248-exon-sc0000449-1510915933:14072..14666 | Clytia hemisphaerica | exon |
| TCONS_00023248-exon-sc0000449-1575043694:14072..14666 | TCONS_00023248-exon-sc0000449-1575043694:14072..14666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000449 | supercontig | sc0000449:12900..14666 + |
Blast
The following BLAST results are available for this feature:
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