TCONS_00023221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023221
Unique NameTCONS_00023221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023221 ID=TCONS_00023221|Name=TCONS_00023221|organism=Clytia hemisphaerica|type=transcript|length=1107bp
AGGTCGCCAAAGATGATTATGTTCATATCCAATGGACTGGGTCGGATCGA
AACCCCGGTAATAATGACGGTGAAGGCCAAGCAGGAACTGATAGAAGCAA
CATAGTTATCTTACGTCCACAAACATTCCCTGAAGGAACACCAGgcgCAG
CAGTGAAAGCTGACTTGAAGAATGGTCAATGGGGAATGAGCATCCCTGAT
TGTCTTTGCAATTCTACTTTCTTGGACATGACATATCTGGAGCGAAATTA
TTTGACTGTGGCTGGAAATACAGCAAACCCGGACAAATTGTTGAATACTA
ACTCACCCTATTTCAATATGGCTCCCAAAAAAGTGATAGGAAAACCCGGT
ACTAATTATCACTACATGAGCACCAGAAATAATAATTTCTCAAACCGCTC
ACAAAAAGGACGTGTTGTTATTAAAGGAGCGGCTGCCGGAGATGCTAAGA
GTTCCAACTAAGCTGATGCCATGATGGAAGAAACCAAAAAGTTCATCCAC
AATTTATTGCACCTATATTGTAGCACATCTTTATTTTGGAATGGTTTGTA
AATGCACAGAGGTTTGTTTAAATCTCTCACTCACAAATTtccaataatat
ttttttttcaattcacctTGCACACAACGTCATAATAACATCCATCTTCC
GTTTGATAAGCGTTGGAGAAACGTTGTCTACAGATAATTATCCATAGGTC
ATTTTCATAATTTGGGATCTCAGACTCCTGAAGTACTTTATCATGAGACT
GCACACGATAcacaaaaatttatatgaaTCAGCAAATATACCAATACAAT
TACCTATAGTATCATCTTTTATGTTTCCCTTTGGATCTTCATTTCATCAT
ACGCATCTTTGCAATATTTTCAATTGACCCAACAGCTggttggttgtaag
tgacgtaaaatcagtcaatacgtcacttgcaaccaatcagctgctgGCGT
GTCCGTGAtttaatgtcagaagacattcaAGTGTTGCATTGCATAAGGAG
GTTATGGGACATTAAAGCTTCTCGACGAAAGTTTGAAGAATCGTTAGAAA
cctttaaaaaccttttttaaaagtatggaattttcttgttttgccATGTT
CTTTTAC
Run BLAST on NCBI

transcript from alignment at sc0000447:19151..24410-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023221 ID=TCONS_00023221|Name=TCONS_00023221|organism=Clytia hemisphaerica|type=transcript|length=5260bp|location=Sequence derived from alignment at sc0000447:19151..24410- (Clytia hemisphaerica)
AGGTCGCCAAAGATGATTATGTTCATATCCAGTAAGTATAAAGTGCTATA
AAAGGTCGCCAAAGATGATTATGTTCATATCCAGTAAGTATAAAGTGCTA
TAAAAGGTCGCAAAAGATGATTATGTTCATATCTAGTAAGTATAAAGTGC
TATTTATGATATGCACCATTGCAATGTCTTCCGTTCCACCCAATAGCTGA
CTGGTTGAAAGTGACGAATTGACTGATTTTACGTCACTTCCAACCAATGA
GCTATTGGTTCCGTGACGTAATGTCAGAAGACATTGCAGTGGTGCATATC
ATGAATAAAAAGAGAATTAAATGGTCCTCACAAACCCCCGGGAGGGAGGG
AATACTAGCCTATGTCCGAGCCAAACTGAAAATCGATGCTGTAAGGGACT
GAGTGAATATAGAAAATTTTGCTTCTTTTTGACGTTTTACGACCCTGTGA
GAGACTATTTTTTGCAATCTTCAGCCAAAAATTTCCAACTTGATTCAAAT
TACGAGAGCTTATGACTTTGTGAGGGAGTCGATTTTTTATATTTCGTACT
TTTGGGACCTTCTTCAGAAACTCTATTGTTATGAGAGACTTTTGAGGGTG
TACAAAAAAGACCAAATGGCTCGCACAAACTGGAAACAAATTTTTGCAAA
GTACAATCATGGTCGAAATCTATTGAGATTTCCTATTTCCTCGTTTTTTG
AAATTTGGAGTTCGAGCGAGAAAGTTGATTTTAGGCCATCTCTTAAATTT
AATCGGGTATTTCAATTTGGCTCGGGTTTATAGACTTCCAGGCTATATTA
TGAGCCTAATTGGACCATTTTTGAATTTTTGGATCCTCAGATCCTAAGGT
CCTAAGTCTCATATTAAAACTCAGAGTTAAAACCCTACCCTTTCAACCAA
CAAAGTTAAAACGCTTCCAAATCGATTGTGGCTTAAGATTTCGTGGGAAT
TTCCCTTTTTTCTCAAATATTACGACCATGATTGTACTTCCCAAAGTACT
AAAAACACCGCTTTAATATATTCTTTTCAGATGGACTGGGTCGGATCGAA
ACCCCGGTAATAATGACGGTGAAGGCCAAGCAGGAACTGATAGAAGCAAC
ATAGTTATCTTACGTCCACAAACATTCCCTGAAGGAACACCAGGTATTAT
ATCATTACAATGTAGCCTCTGTAACTCGAACACTCACAGGGAACATAGAT
TTGCTCGAGTTATGGAAAATTCGAGTTATGAAGACTCTACTGTAATATCA
TATCGTTAGAATCGTTATCGTTAGACTGGTAGACCAAGCTGTAAGTTGGA
TATCCAGGCTATATGGTGGTGATTGCTTCATCAATAGTATAACCATAGTC
ATTATAATAAACCCCGGTCTGGCAATGTATTGTTTTAGCTTTTTGTTCAA
ATTTTTAAGTTGCGGTTTGCATACTTTTTGATCAGGTTACCAAAATCTCC
TCTTATGATTGGTCTATTTTCTAATCACATGATCAAAAAGTTTGCAAAAT
CGATCGATTTTGGTACGTAAGGCTCTATCTTTTAACAATAAAAAGAGACA
AAAGGCTTCCAGACCAGTGTTTCTATAATGACTATGGTATAACCTATCAG
AAAAGTGTCAGAATTAGAATCTTTTGATAGCATACTCATCAACTTGAAAT
AGGCCTCACGCACCCCCTCTGATGTGTTTCGGTAAAGTGGATGCGAGAGT
TACCCTCGCAGGGTAATTTCCAAGCACTTTTTTACCACTGTTATTCGGTG
GCAAAAACTCAATTTCAAATTGAGTTTTCAAACTCAATTTTGTAAAGAAA
AAAATGTGAAAGGTAAGTAATGCAAGATAGAGAAATGACGGTACAAAAAC
TGGGTATTTTATATTGACCTTTGCATATTTCTGTTTATATTTTAGCTGTG
TAAATACATTTTGTAGATACATTTCATCGTTTACTGAAAACTACCGAGAC
TCTTATCGTTTTCGATGTTATGATTTATTGCTAATTTAGCAAATTATTTG
ACACACCAAAAAAAGGTTTGTGGTGATAGAAAGTATAGTTTGGTTGCAAT
GAAACTTCTTTCAAGTCCTTATTTCAAATTTACCTTCTTCAACGATATGG
AAATGAGATTAGTTTATTTAGTTCAAAATAAAAATATTGCTTTTATCAAA
AGATAACGATTGACATCAACATTCACATTAAACTCCTCCAAAACATTTCA
AATTTAAGGTTGTTTTTTCATAATCAAGTTAGGATTTTTAGACTACTAAG
ATGTAAGAAATCACCTATTTAGGACGTTTAGAGGCCAAAAATTCTTCGTC
GCCCAACCATGGTGGGTGATATTTTATACCACTGCATTGAAACTCAATTT
TTAAGACCAAAACTTAAATTTCATTCAATTTGAATTAAAAACTTGAATGG
CTAGGGGTTAATATGATATTATTGGATTACTAAATATTTTTAAGTATTTC
TCGGTTGGGAATATTATTCACCATTAGTATCCCCTACATCAAAACATACG
AGAGGAGATGTGTGCAGCCTAGTTCTACCCTCAAAGAACTTACACTTTTG
GGCTTTTTTAGAAAAATTTTACCCCCACTGTTGAGGATATTGATTTTTCG
AAGTATCGAACCCCCTGGATATCCTACTTTATTAGTAAAGACCTCCTGGA
TACCCCCTTAGGAATATGCTAAACCCCTGGATATCATCCTCACTATTTCT
GGAAAAGCCCATTTACGTCCATATGCATACTTTTTTTTATTTTCAGGCGC
AGCAGTGAAAGCTGACTTGAAGAATGGTCAATGGGGAATGAGCATCCCTG
ATTGTCTTTGCAATTCTACTTTCTTGGACATGACATATCTGGAGCGAAAT
TATTTGACTGTGGCTGGAAATACAGGTAAGTTTCTTCTATGTTTATTAAA
ATCAATCAAATACGCGCTTTTTTAATAAGAATATACTTTAAAAGAATATT
CACAATGAAATTTGCCAAAAAATTAAGAATATATCATGGAATTTTGCCAC
TGAAGCTAAGAATGCCATTTTTAGAGAATTTTCAATTATAAATTGCCAAT
TGCCCTCACTCCTTTCACAAAAATGCCATTTTATGCTTGAAACGTATGTA
CTTAATGTTAAATCTAGTTTGAAATAGGATCCTAACCTAAGAAAGCTGTA
AGAATATTTTAGAATGATTTTCCCAAAAAAAGTTGAGAATATCCTTCATG
AAATAAAAAAACACCATTCTTATAAAAAAAAGCGTGATATAGTTCCTCGC
ACTGACCTTTATATACCCTGGACCAGGTTTCTCAACCCTTGGCCAAGCAA
AATCTTTGATCGGAGTTTTTTGAAAAGTGGTACCCTAATGGCGGCACTAC
TCAATAGCGGTGTAAATACATCGAAAGTGCTAGGTCTACTTTCCTTTCAA
TACTGTTGATGATGTAGCGCCGTTAGACATAAGTTTTTAACATTGCAATG
GCTTCTTCTCGGGTACCAATTCTAAAAAAATTCCGATCAAAGATGGCGGA
TATAGCTTTGTCCATCCTTAAAGGGACATAAAAGTACTGACGAAATTTGT
AAACGAACCGTATGCTGCAGCGGGGTACAAAATCAAAATAAATGTCACAT
GTCAAAATAAATTGTTTTTACAAGTTTGTTTTGGACACGTGATTTTAATT
GTTCTCATTAATGACACGTGGTTCGTGCAATGTTTACATTTTACTAACTT
TTATGTCCCTTTAATCCTTAGTATTTTATCTTCTATTTTACAGCAAACCC
GGACAAATTGTTGAATACTAACTCACCCTATTTCAATATGGCTCCCAAAA
AAGTGATAGGAAAACCCGGTACTAATTATCACTACATGAGCACCAGAAAT
AATAATTTCTCAAACCGCTCACAAAAAGGACGTGTTGTTATTAAAGGAGC
GGCTGCCGGAGATGCTAAGAGGTATATTTTAAAAACACAACCAGTTCTCT
CTAACTTGAACTTCTGTAATTCGAATCTTAAATCTTTCATGAGATGGAAA
GTGGTAAAGATTACTCTCCGTAATTCGAATAGAGTTTGTTACAACGGCTT
TTAAAGGTTTCATTTTTACATAAATGTTCCCGTTTCATATCAGACACATG
CTTCATATCAGGGCAGTGCCTACACATTGTTATATTGTGCTGATATAAGC
AAAAAATGTTATTTTCATCTTTCTGACCAATCTTGCTTCACATCCGTGTA
AATTCAATATCAAAAAGCTTGTGAATTAAAATTGATGAGCAAGCAAACAA
TATCACTCTTGTTTAAAAACAAAACCTTTAATATAGCAAAAGGGAAAACT
TGTATGCCCTTAAACCTGTGGATGTCCAGGAACATAGTTCCATTTACTCC
CTCTTTAACCAAAAGCTAGACTCCATAAGCGTTCTTTGGTTTTTTTGTCT
TATTTCCAAGCAAAAGCGATCGAAGCGAAATGTGCTTGTCCATATAGAGA
CCCCCTTCTTGACTTTGCCAAGTATGAATTTGATATTCAGCGTTTATTTC
CTAATGAATATAAATTTGCTGATTTTTAAGTCCAAAAAGTGTAACTCCCT
GAGAAATTTCTTTTTCTGTTTCACCTTTTATAACTTTTCATGTTTCCTTT
TTAGTTCCAACTAAGCTGATGCCATGATGGAAGAAACCAAAAAGTTCATC
CACAATTTATTGCACCTATATTGTAGCACATCTTTATTTTGGAATGGTTT
GTAAATGCACAGAGGTTTGTTTAAATCTCTCACTCACAAATTTCCAATAA
TATTTTTTTTTCAATTCACCTTGCACACAACGTCATAATAACATCCATCT
TCCGTTTGATAAGCGTTGGAGAAACGTTGTCTACAGATAATTATCCATAG
GTCATTTTCATAATTTGGGATCTCAGACTCCTGAAGTACTTTATCATGAG
ACTGCACACGATACACAAAAATTTATATGAATCAGCAAATATACCAATAC
AATTACCTATAGTATCATCTTTTATGTTTCCCTTTGGATCTTCATTTCAT
CATACGCATCTTTGCAATATTTTCAATTGACCCAACAGCTGGTTGGTTGT
AAGTGACGTAAAATCAGTCAATACGTCACTTGCAACCAATCAGCTGCTGG
CGTGTCCGTGATTTAATGTCAGAAGACATTCAAGTGTTGCATTGCATAAG
GAGGTTATGGGACATTAAAGCTTCTCGACGAAAGTTTGAAGAATCGTTAG
AAACCTTTAAAAACCTTTTTTAAAAGTATGGAATTTTCTTGTTTTGCCAT
GTTCTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013064XLOC_013064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023221-exon-sc0000447-1575043694:24380..24410TCONS_00023221-exon-sc0000447-1575043694:24380..24410Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1575043694:23268..23380TCONS_00023221-exon-sc0000447-1575043694:23268..23380Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1575043694:21536..21664TCONS_00023221-exon-sc0000447-1575043694:21536..21664Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1575043694:20490..20667TCONS_00023221-exon-sc0000447-1575043694:20490..20667Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1575043694:19151..19806TCONS_00023221-exon-sc0000447-1575043694:19151..19806Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1510915933:24380..24410TCONS_00023221-exon-sc0000447-1510915933:24380..24410Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1510915933:23268..23380TCONS_00023221-exon-sc0000447-1510915933:23268..23380Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1510915933:21536..21664TCONS_00023221-exon-sc0000447-1510915933:21536..21664Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1510915933:20490..20667TCONS_00023221-exon-sc0000447-1510915933:20490..20667Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1510915933:19151..19806TCONS_00023221-exon-sc0000447-1510915933:19151..19806Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1491911889:24380..24410TCONS_00023221-exon-sc0000447-1491911889:24380..24410Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1491911889:23268..23380TCONS_00023221-exon-sc0000447-1491911889:23268..23380Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1491911889:21536..21664TCONS_00023221-exon-sc0000447-1491911889:21536..21664Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1491911889:20490..20667TCONS_00023221-exon-sc0000447-1491911889:20490..20667Clytia hemisphaericaexon
TCONS_00023221-exon-sc0000447-1491911889:19151..19806TCONS_00023221-exon-sc0000447-1491911889:19151..19806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000447supercontigsc0000447:19151..24410 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.00658941	0	0	12.56	22.4121	0	0	57.962	57.8279	50.7258	45.428	7.1769	9.09762	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top