TCONS_00023202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023202
Unique NameTCONS_00023202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023202 ID=TCONS_00023202|Name=TCONS_00023202|organism=Clytia hemisphaerica|type=transcript|length=576bp
CTTTTGAAATTTACTACCGGTGATGCCAATGATCTGATTCAGTGCTGTCT
GTATATGACGAATGGCTATGAACGTGCTAAGGCTCTTTTGAAGAAGAAAT
ATGGAGACCCCCATCGAATcatgattgcttataaaaaacagttgGATAAT
TGGGAGAATGTCAAACTTGGTGATTCCTCTTCATTTGGAAAATTTCATTC
CTTTCTGCTTAAGTGTGGCTCAGTTATTGAGGGTAACTTGTGGAATAGTT
TTGATACTGCTGACAATCTCTGCATCATTGCCAGCAAGCTTCCAAATGTA
TGTCAAGATAAGTGGAATAGGAAAGTTGTTGATATTCGAAATCGTTTTAA
AAGAGAAccactttttaaagatttatttttGTTCGTTGAAATGGAAATGA
CAGTTGCAAGTGATCCTTTGTTTTCTAAAGAAGCACTTAAAGAGCGTTTT
CCAAGTGATTCTAAAAGCTCTGGTTTTTCTGGCAGTTTTAAGCCAAGAAA
GTATTTTGATAATAAATCACCAAAAAGTTTTCTATGTGTCACTTGCAATG
TTAACCATGATATTGAGGCTTGTCCA
Run BLAST on NCBI

protein sequence of TCONS_00023202-protein

>TCONS_00023202-protein ID=TCONS_00023202-protein|Name=TCONS_00023202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
LLKFTTGDANDLIQCCLYMTNGYERAKALLKKKYGDPHRIMIAYKKQLDN
WENVKLGDSSSFGKFHSFLLKCGSVIEGNLWNSFDTADNLCIIASKLPNV
CQDKWNRKVVDIRNRFKREPLFKDLFLFVEMEMTVASDPLFSKEALKERF
PSDSKSSGFSGSFKPRKYFDNKSPKSFLCVTCNVNHDIEACP
Run BLAST on NCBI

transcript from alignment at sc0000446:156267..156842

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023202 ID=TCONS_00023202|Name=TCONS_00023202|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at sc0000446:156267..156842 (Clytia hemisphaerica)
TGGACAAGCCTCAATATCATGGTTAACATTGCAAGTGACACATAGAAAAC
TTTTTGGTGATTTATTATCAAAATACTTTCTTGGCTTAAAACTGCCAGAA
AAACCAGAGCTTTTAGAATCACTTGGAAAACGCTCTTTAAGTGCTTCTTT
AGAAAACAAAGGATCACTTGCAACTGTCATTTCCATTTCAACGAACaaaa
ataaatctttaaaaagtggTTCTCTTTTAAAACGATTTCGAATATCAACA
ACTTTCCTATTCCACTTATCTTGACATACATTTGGAAGCTTGCTGGCAAT
GATGCAGAGATTGTCAGCAGTATCAAAACTATTCCACAAGTTACCCTCAA
TAACTGAGCCACACTTAAGCAGAAAGGAATGAAATTTTCCAAATGAAGAG
GAATCACCAAGTTTGACATTCTCCCAATTATCcaactgttttttataagc
aatcatgATTCGATGGGGGTCTCCATATTTCTTCTTCAAAAGAGCCTTAG
CACGTTCATAGCCATTCGTCATATACAGACAGCACTGAATCAGATCATTG
GCATCACCGGTAGTAAATTTCAAAAG

Coding sequence (CDS) from alignment at sc0000446:156267..156842

>TCONS_00023202 ID=TCONS_00023202|Name=TCONS_00023202|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000446:156267..156842 (Clytia hemisphaerica)
TGGACAAGCCTCAATATCATGGTTAACATTGCAAGTGACACATAGAAAAC
TTTTTGGTGATTTATTATCAAAATACTTTCTTGGCTTAAAACTGCCAGAA
AAACCAGAGCTTTTAGAATCACTTGGAAAACGCTCTTTAAGTGCTTCTTT
AGAAAACAAAGGATCACTTGCAACTGTCATTTCCATTTCAACGAACaaaa
ataaatctttaaaaagtggTTCTCTTTTAAAACGATTTCGAATATCAACA
ACTTTCCTATTCCACTTATCTTGACATACATTTGGAAGCTTGCTGGCAAT
GATGCAGAGATTGTCAGCAGTATCAAAACTATTCCACAAGTTACCCTCAA
TAACTGAGCCACACTTAAGCAGAAAGGAATGAAATTTTCCAAATGAAGAG
GAATCACCAAGTTTGACATTCTCCCAATTATCcaactgttttttataagc
aatcatgATTCGATGGGGGTCTCCATATTTCTTCTTCAAAAGAGCCTTAG
CACGTTCATAGCCATTCGTCATATACAGACAGCACTGAATCAGATCATTG
GCATCACCGGTAGTAAATTTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013051XLOC_013051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023202-exon-sc0000446-1491911889:156267..156842TCONS_00023202-exon-sc0000446-1491911889:156267..156842Clytia hemisphaericaexon
TCONS_00023202-exon-sc0000446-1510915933:156267..156842TCONS_00023202-exon-sc0000446-1510915933:156267..156842Clytia hemisphaericaexon
TCONS_00023202-exon-sc0000446-1575043694:156267..156842TCONS_00023202-exon-sc0000446-1575043694:156267..156842Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023202-proteinTCONS_00023202-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446supercontigsc0000446:156267..156842 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.1901	2.92231	1.42291	1.39209	0	0.206031	0.248568	0.232706	0.325846	0.100903	0.489696	0.257526	0.578627	0.133536	0.0548922	0.117815	0.0725695	0.148763	0.102762	0.645198	0.280397	0.136768	0.997555	0.906922	0.415159	0.09263	0	0.141464	1.50214	0.874539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top