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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023201 ID=TCONS_00023201|Name=TCONS_00023201|organism=Clytia hemisphaerica|type=transcript|length=865bp
AACTTCAAGAGCTTAGAAGGATTTCTTGGGCACCATGTCTCGACTCCAAG
GAACGAACATTTTTTCAACGGAAAGACATCTTTAACACGGACCTGAACGT
TAAAATCATCTTGCAAATACATTGTATCATAATGGTTAACGTACGCAAAA
ACATCTACATAGGCCATGTGACCGTCACTTTTCAATACTCCCGGTGACAC
AAAACGTCCAATCGGCTCCATAAAAGAACAAGAATCTTCCATTCTCGAAA
CCTGAACTGACTCGCAGTTTATTCGGCGTCGAACATTTTCAGGCATTCTC
CAATCTTTCTGTATTATGAAATAagtcatgtttttatttttgcgtGAAAA
ATATCGTCGTTGATCCCCGAGCTTCCTTTCTAATTTTTCCAGATCCTCAA
AACTTATGAGAACATCAGCATCAGAATCGTAAGGGATCAAATGACCATCC
CGATAAGCAGCCAACAATGAGCCATCATGTAAAGCATAGACGATACCATG
TTCCTTGGTAAAAGCATCCCAACTCCGAAATAATTTTTGTACTATTGGTG
CGTATGGATTCTCTTTACACGTTCCGTCGCCGTAATCAGAAATATTTTTC
GGACTGAGTTCCAACCTTTCGTTCGAATATATTTTACGCCTTATAAACTT
ATCATTCGAAACAAAATAAAGTTCAGTTTTACTGTAAACATCCAGTTGGT
CTTTAAGTGATAAATTTGTCATCATTCTCCAGATGACCAAAAAACTGAAT
ATTAAAGAAGTCCCAAAAAAGAATTTCACATTCAGCATAATAGTTTTGTT
GTTGTGAAAACGACACGTTCATGAAAATGTATAAAATTCGAATTTAACTA
ATTTGACTGCTACCA Run BLAST on NCBI protein sequence of TCONS_00023201-protein >TCONS_00023201-protein ID=TCONS_00023201-protein|Name=TCONS_00023201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MLNVKFFFGTSLIFSFLVIWRMMTNLSLKDQLDVYSKTELYFVSNDKFIR
RKIYSNERLELSPKNISDYGDGTCKENPYAPIVQKLFRSWDAFTKEHGIV
YALHDGSLLAAYRDGHLIPYDSDADVLISFEDLEKLERKLGDQRRYFSRK
NKNMTYFIIQKDWRMPENVRRRINCESVQVSRMEDSCSFMEPIGRFVSPG
VLKSDGHMAYVDVFAYVNHYDTMYLQDDFNVQVRVKDVFPLKKCSFLGVE
TWCPRNPSKLLK Run BLAST on NCBI transcript from alignment at sc0000446:142738..143602 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023201 ID=TCONS_00023201|Name=TCONS_00023201|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0000446:142738..143602 (Clytia hemisphaerica)
TGGTAGCAGTCAAATTAGTTAAATTCGAATTTTATACATTTTCATGAACG
TGTCGTTTTCACAACAACAAAACTATTATGCTGAATGTGAAATTCTTTTT
TGGGACTTCTTTAATATTCAGTTTTTTGGTCATCTGGAGAATGATGACAA
ATTTATCACTTAAAGACCAACTGGATGTTTACAGTAAAACTGAACTTTAT
TTTGTTTCGAATGATAAGTTTATAAGGCGTAAAATATATTCGAACGAAAG
GTTGGAACTCAGTCCGAAAAATATTTCTGATTACGGCGACGGAACGTGTA
AAGAGAATCCATACGCACCAATAGTACAAAAATTATTTCGGAGTTGGGAT
GCTTTTACCAAGGAACATGGTATCGTCTATGCTTTACATGATGGCTCATT
GTTGGCTGCTTATCGGGATGGTCATTTGATCCCTTACGATTCTGATGCTG
ATGTTCTCATAAGTTTTGAGGATCTGGAAAAATTAGAAAGGAAGCTCGGG
GATCAACGACGATATTTTTCacgcaaaaataaaaacatgactTATTTCAT
AATACAGAAAGATTGGAGAATGCCTGAAAATGTTCGACGCCGAATAAACT
GCGAGTCAGTTCAGGTTTCGAGAATGGAAGATTCTTGTTCTTTTATGGAG
CCGATTGGACGTTTTGTGTCACCGGGAGTATTGAAAAGTGACGGTCACAT
GGCCTATGTAGATGTTTTTGCGTACGTTAACCATTATGATACAATGTATT
TGCAAGATGATTTTAACGTTCAGGTCCGTGTTAAAGATGTCTTTCCGTTG
AAAAAATGTTCGTTCCTTGGAGTCGAGACATGGTGCCCAAGAAATCCTTC
TAAGCTCTTGAAGTT Coding sequence (CDS) from alignment at sc0000446:142738..143602 >TCONS_00023201 ID=TCONS_00023201|Name=TCONS_00023201|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000446:142738..143602 (Clytia hemisphaerica)
ATGCTGAATGTGAAATTCTTTTTTGGGACTTCTTTAATATTCAGTTTTTT
GGTCATCTGGAGAATGATGACAAATTTATCACTTAAAGACCAACTGGATG
TTTACAGTAAAACTGAACTTTATTTTGTTTCGAATGATAAGTTTATAAGG
CGTAAAATATATTCGAACGAAAGGTTGGAACTCAGTCCGAAAAATATTTC
TGATTACGGCGACGGAACGTGTAAAGAGAATCCATACGCACCAATAGTAC
AAAAATTATTTCGGAGTTGGGATGCTTTTACCAAGGAACATGGTATCGTC
TATGCTTTACATGATGGCTCATTGTTGGCTGCTTATCGGGATGGTCATTT
GATCCCTTACGATTCTGATGCTGATGTTCTCATAAGTTTTGAGGATCTGG
AAAAATTAGAAAGGAAGCTCGGGGATCAACGACGATATTTTTCacgcaaa
aataaaaacatgactTATTTCATAATACAGAAAGATTGGAGAATGCCTGA
AAATGTTCGACGCCGAATAAACTGCGAGTCAGTTCAGGTTTCGAGAATGG
AAGATTCTTGTTCTTTTATGGAGCCGATTGGACGTTTTGTGTCACCGGGA
GTATTGAAAAGTGACGGTCACATGGCCTATGTAGATGTTTTTGCGTACGT
TAACCATTATGATACAATGTATTTGCAAGATGATTTTAACGTTCAGGTCC
GTGTTAAAGATGTCTTTCCGTTGAAAAAATGTTCGTTCCTTGGAGTCGAG
ACATGGTGCCCAAGAAATCCTTCTAAGCTCTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023201-exon-sc0000446-1491911889:142738..143602 | TCONS_00023201-exon-sc0000446-1491911889:142738..143602 | Clytia hemisphaerica | exon |
| TCONS_00023201-exon-sc0000446-1510915933:142738..143602 | TCONS_00023201-exon-sc0000446-1510915933:142738..143602 | Clytia hemisphaerica | exon |
| TCONS_00023201-exon-sc0000446-1575043694:142738..143602 | TCONS_00023201-exon-sc0000446-1575043694:142738..143602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000446 | supercontig | sc0000446:142738..143602 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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