TCONS_00023200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023200
Unique NameTCONS_00023200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023200 ID=TCONS_00023200|Name=TCONS_00023200|organism=Clytia hemisphaerica|type=transcript|length=481bp
GTGTATTTCCTctcttcttaacatttttccttTCATGCTCGCATGCTgca
tattaagaaaaaattcgactctttatttacacatatatacatcaaaacaa
aggctctTCATGTTGCCCATTGTTTGATGACAATAATTTTGTCtgcaaaa
agaagtaaatttttTAAGACAAAATTCAACCCACCAGCCAAACAATGAAC
AATAGAGTGGAAAAGCACTGTGACGGACAAAAAATCTCTCATTTATGGTA
CCATAGAACACTGGAGTAAAGGATATCATTTAATACTCTCCTACacattt
gtaaaaaatgtttgGGGTTTAAGCACTAAGTTGTTTTGGCCTTGATGGGC
CGTGAACTGTAAACAATCCAATAAGTAACCATAGTAACTTCAATCTTTTA
AGCCTGTAGGGGTCTGGAGACAAAGCTGTCTTTGGCACTGATGGGCTACG
TGAGAaaagtgattttaaaaataaaaaaaca
Run BLAST on NCBI

transcript from alignment at sc0000446:133499..133979

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023200 ID=TCONS_00023200|Name=TCONS_00023200|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0000446:133499..133979 (Clytia hemisphaerica)
tgtttttttatttttaaaatcactttTCTCACGTAGCCCATCAGTGCCAA
AGACAGCTTTGTCTCCAGACCCCTACAGGCTTAAAAGATTGAAGTTACTA
TGGTTACTTATTGGATTGTTTACAGTTCACGGCCCATCAAGGCCAAAACA
ACTTAGTGCTTAAACCCcaaacattttttacaaatgtGTAGGAGAGTATT
AAATGATATCCTTTACTCCAGTGTTCTATGGTACCATAAATGAGAGATTT
TTTGTCCGTCACAGTGCTTTTCCACTCTATTGTTCATTGTTTGGCTGGTG
GGTTGAATTTTGTCTTAaaaaatttacttctttttgcaGACAAAATTATT
GTCATCAAACAATGGGCAACATGAagagcctttgttttgatgtatatatg
tgtaaataaagagtcgaattttttcttaatatgcAGCATGCGAGCATGAa
aggaaaaatgttaagaagagAGGAAATACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013049XLOC_013049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023200-exon-sc0000446-1491911889:133499..133979TCONS_00023200-exon-sc0000446-1491911889:133499..133979Clytia hemisphaericaexon
TCONS_00023200-exon-sc0000446-1510915933:133499..133979TCONS_00023200-exon-sc0000446-1510915933:133499..133979Clytia hemisphaericaexon
TCONS_00023200-exon-sc0000446-1575043694:133499..133979TCONS_00023200-exon-sc0000446-1575043694:133499..133979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446supercontigsc0000446:133499..133979 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777941	1.18128	0	2.42915	4.58749	0.844754	7.84793	4.59291	2.15692	2.70405	1.33991	2.60058	2.18123	2.12237	0.262471	0.596832	0.342609	0.363861	0.17802	0.436435	0.585774	0	0.215072	1.01984	2.8815	4.81962	0.703789	1.12854	0.868853	0.68538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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